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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 13735.ENSPSIP00000006800 |
| ProteomeId | EsuBft1055_5 |
| Protein domains | PTHR19303 |
| Protein domains | IPR009057 |
| Protein domains | IPR004875 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | pogo transposable element with krab domain os:mus musculus gn:pogk pe:2 sv:2 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 33208|Metazoa |
| Length | 2863 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.23e-42 |
| EggNOG OGs | KOG3105@1|root,KOG3105@2759|Eukaryota,38I47@33154|Opisthokonta,3BMCH@33208|Metazoa,3CYY1@33213|Bilateria,48700@7711|Chordata,4949I@7742|Vertebrata |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | pogo transposable element with KRAB domain |
| COG category | BD |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0003677 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1055_5a-0001 ID=EsuBft1055_5a-0001|Name=EsuBft1055_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2863bp|location=Sequence derived from alignment at Scaffold_61:33248..37051+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AACAGCAGTAGCAGCTGGCACAGCAACAGGCGCCAACATGGCAGCCGCCG GCTCGCCCCACCAGCAGCCAGTTGCTGACTCGCTCTCAGCAGCACGCACG AGTACCGCAGCAGGCGGGTCAACACGGACCAGCCAAGCCTCTCAGCTGGT GGTGGTGGACCAGGAGCCAAGCACTTCCGTCGTCACGGAACGATCAGAGG CGGCATCTACCGGTATGTCTGGAGCGCCGCCATCCGGAGCACCGGCACCA GCTCCAGCGCCGGCACCGGCTCCAGCGCCGGCACCAGCTCCAGCGCCAGG AAGTGTAGGATCGGCAGCAGCAACACCCACACCAGCACCAGCGCCAGGAG CACCGGTGACCAACGATGGCTCACCCCGCGACACGATGTTTCCCGGAGAG ACCGAGTGGGGAGATGGGTTCGGCGGCGCTCTCTTCGGTACGCCGGCGCA GAACAAGGGCAAGCGGAAGAAAGGGCAGCTGGAGTTGGAGCCGCCGGACT TCGAGATTCCCAACTTTGGTGGTGGATCCCAAAGGAAGCGCTACCCTCTG CAGTTCAAGGTGAATGCTGTGCGGTACTCGCAGAAAAGGGTCAAGGGGGC GCAAGGGCCGGGCGGGACTGTTGGGATCTCTTACGCCACCAGGGTCCTGA ACATTCCCGACAAGGCCACGTTGGCGGAGTGGGTTAGGAAGGTCCCCGAG TACGAAGCCGCGCTTGCGGCAGAGGGCGGCAAGTTCAAGGGATTGAAGAG CAAGAAGAACGCCAAGAACCGCATGTCGCTGAACACAGGACGGGTCAGGA CGAACCGGGAAGCCGAGCAAGCGATCGTGGACTGGATCAATGATCTGCGT TCTGAGAGCATCTCGGCCCGCGTTTCGACGAAGATGCTCAAGCACAAGGC CATCGAGCTCAACCCGACCTTCTTCGGGGAGAGGCCGCTGGTATCCGACC TCGCGGGCAACCACAAGTACAAGAAAAAGCTGAGCCAGTGGTGCAGAAGG TTTCTCAAGGTGTACCGCTTTTCTGTGCGAGCCGTCACCCGGCAAGGCCA GAAACTTCCTTCCGGCTGGCCCGTGATCGCCATGCAGGCGATCAAGGAGT GGAGGAGCCTAAAGTACGACGTGCCTTCTGCGCTCGAACTTGCGGACGGA GTCGAATGCCTGGGGGTTGCGACGGTGGCGGGAGGCAGCGCGAGCGGCGG CGGGGGTGGGAGTGGCGCTGGAGTTCTTTCGGGGCCGAAGCTGAAGTTCG CCTTGGCGCAGATCGGCAACATGGATGAGACTCCTACGTGGATGGAGAGC CCGGGGAGTGACACTGTGAACGCCGTGGGTGAGAAGGAGATTGCTGTCAA AACCGGCGGCAAGGAGAAGGTGCGCATCACTTCGGTCCTGACGTGCTTCG CCGACGGCAGCAAGCTGCAGCCCCTCATCATCTTCAAGGGCCAACCCACT CCGAAGGGGAAGTCCCCCGCCACCAACAGCATCGAACGCGAGTTCAAGAC CTACAAGGACAAGAAGGGCTACGCCTACCCCCGAGGTCTCATCTACGCCG TCGACCCGAAGGCATGGCACTCCCAGCGGGTGTTCAACGACGTGTGGGTC CCGCAGGTGTGGAACCAGCGCCCGGGGCGGCAGGGCCGCCTGGGCGGCTA CCGCCAGCCTGACACGCTGCTGGCGTGGGACGACTACACCGTCCACAAGA CGGACGCGTCTAAGGAGGCGATGGCGAAGTCCAACACGACGCTGTTCCTC ATCCCGGGAGGCCTGACCCCCAAGCTCCAGCCGTGCGATGGCCTCGTCAA CAAGATTTTCAAGGAACACATGTCCAGGTTCTACGACGACCACATGGCTT CCAAGGACGTCAAGCGCGACGAGCGCGGCTACCCGGAGGCCCCTTCGCGG GGGTTGGTGGCACAGTGGGTGAAGAAGGCGTGGGATGCCTTGACCCCGGA GGAGATCCGCTCGAGCTGGAGGAAGGCTGGCCTGCTGCTTCCCTTCGACG GGTCGGGAGACGAGGCCTGGGCCAACAAGGAGCTCGGCTCCAACGCCCAG GGAGAGCCCCTCGACGCGCCGTCGGCCGGTGCGGACAAGGCGGACCCGTC GTCGGGAGGCGAGAACTTGCTGGAGGTGCTGGAAATCGACGACGACGACG ACACGGGCGTGCCGGTGGTGGACATCAGCGACGACGAGGAGGGCGTGGAG CTTTGAGGCATCGGTAGCGATACTTGTGTTGAGAAAAGCTCGTGTTGTCC TTCTCATTTTCTCTTGGCGTGCATTTCTCTCCTTCGTCGTCTTGGAGCGT GATTGCAATGTCGGCTGATTTCTTAGCCGTGTGGAGTGCAACGTTTGCTT GTTTCGTAGTGTAGGTTTGTGGTTCGGGGTCTCCGATGTGTACTGGCTTT GCTCAACTCTCTGTTGGCCGTACCTACCAGCAAGGTACGCAGCAGCCTGT TTTTTTTTGTGAGGGGGCAGAACGGATGGCGCACTTTGTGGCCATCCCCC GACATCATATCGGGCGAGGTACCTTCGATTTAAAATACCGTTTTCCGATG CTCCATCACGCCGTCACGATTGCTGACATACGGTACAGTGTGTGAACTTT CTTCGGCGTTGAGGGGGTTGAGTCATCGCCGAGGTCATGTGCCCAAGAGT TTCGTCAACCCCCTTGAGCCCCTTTTTGTGGTAGTGCAAAGCAGCGGCAA GTGTCGTACAGGCATTGCCATCACCCCCCCGCAATACCACACCCCTTCAG GGTGCGGCAGCAGCGGTTCAACTCCACAAGCAGTGTATCACACCCCCTTT TCATCACACCCCCGAACACATCTTTGAGTGTTTCGACGAGTTATCACACC CCCTGTTTATCAC back to topprotein sequence of EsuBft1055_5a-0001 >EsuBft1055_5 ID=EsuBft1055_5|Name=EsuBft1055_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=722bp
MAAAGSPHQQPVADSLSAARTSTAAGGSTRTSQASQLVVVDQEPSTSVVT ERSEAASTGMSGAPPSGAPAPAPAPAPAPAPAPAPAPGSVGSAAATPTPA PAPGAPVTNDGSPRDTMFPGETEWGDGFGGALFGTPAQNKGKRKKGQLEL EPPDFEIPNFGGGSQRKRYPLQFKVNAVRYSQKRVKGAQGPGGTVGISYA TRVLNIPDKATLAEWVRKVPEYEAALAAEGGKFKGLKSKKNAKNRMSLNT GRVRTNREAEQAIVDWINDLRSESISARVSTKMLKHKAIELNPTFFGERP LVSDLAGNHKYKKKLSQWCRRFLKVYRFSVRAVTRQGQKLPSGWPVIAMQ AIKEWRSLKYDVPSALELADGVECLGVATVAGGSASGGGGGSGAGVLSGP KLKFALAQIGNMDETPTWMESPGSDTVNAVGEKEIAVKTGGKEKVRITSV LTCFADGSKLQPLIIFKGQPTPKGKSPATNSIEREFKTYKDKKGYAYPRG LIYAVDPKAWHSQRVFNDVWVPQVWNQRPGRQGRLGGYRQPDTLLAWDDY TVHKTDASKEAMAKSNTTLFLIPGGLTPKLQPCDGLVNKIFKEHMSRFYD DHMASKDVKRDERGYPEAPSRGLVAQWVKKAWDALTPEEIRSSWRKAGLL LPFDGSGDEAWANKELGSNAQGEPLDAPSAGADKADPSSGGENLLEVLEI DDDDDTGVPVVDISDDEEGVEL back to topmRNA from alignment at Scaffold_61:33248..37051+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1055_5a-0001 ID=EsuBft1055_5a-0001|Name=EsuBft1055_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3804bp|location=Sequence derived from alignment at Scaffold_61:33248..37051+ (Ectocarpus subulatus male Bft15b) AACAGCAGTAGCAGCTGGCACAGCAACAGGCGCCAACATGGCAGCCGCCG
GCTCGCCCCACCAGCAGCCAGTTGCTGACTCGCTCTCAGCAGCACGCACG
AGTACCGCAGCAGGCGGGTCAACACGGACCAGCCAAGCCTCTCAGCTGGT
GGTGGTGGACCAGGAGCCAAGCACTTCCGTCGTCACGGAACGATCAGGTG
AGACATACATGTGTACGCGCTCGTACAGTAGTAAGTAGTATTTTGTTCCA
CTGTCTCGAAACGTGCAGTTTGCGGACTTTTGCGCCACCCGCACACTCCA
GGCTAGTGTTTTTTCCCTTTTTTTTTGAGCCACACGTTCCCGGTACACAT
GTTTAAGTTGTCATGCGCCACCCGCACACCTGACTTCGTATATTTTGTTC
ACATTTGTTTTTGAGCCACATACGTTCCCGGTACACATTTATTTTTTTAG
TTATATTGCGCCACCGGCACACTCCAGACTTCCTTGTATTTTTTCATTTT
TTTTTTAAGCCACACGTTCCCGGTACATATTTTATAATATGGTGTTTGCG
CCGCCCTCACAACTTCGCACATTTTTGTTTCTTTGTTTCGAGCCCTACAC
GTTCACGGTACACTTTAAAAACAATTATATTGCGCAACACTCCGGGTTTC
CTGTGATTTGTTCTCACCTTTGTGTTTGATCCACGTTTCCGGTACATCTT
TTCAAGTTGTATTATGGCGTGGGTGTGTACGGTAATTTTTTGTTCCTGCG
TGGCGCAGATGCGCGTTGTTTCCTGTCCACACAACACATGTTTTTCGCGT
TCCGACATCGACCGCTTCGTGCCATTCCGCACATGGTTGTCTGCGTTTAT
TTTTTCTAGAGGCGGCATCTACCGGTATGTCTGGAGCGCCGCCATCCGGA
GCACCGGCACCAGCTCCAGCGCCGGCACCGGCTCCAGCGCCGGCACCAGC
TCCAGCGCCAGGAAGTGTAGGATCGGCAGCAGCAACACCCACACCAGCAC
CAGCGCCAGGAGCACCGGTGACCAACGATGGCTCACCCCGCGACACGATG
TTTCCCGGAGAGACCGAGTGGGGAGATGGGTTCGGCGGCGCTCTCTTCGG
TACGCCGGCGCAGAACAAGGGCAAGCGGAAGAAAGGGCAGCTGGAGTTGG
AGCCGCCGGACTTCGAGATTCCCAACTTTGGTGGTGGATCCCAAAGGAAG
CGCTACCCTCTGCAGTTCAAGGTGAATGCTGTGCGGTACTCGCAGAAAAG
GGTCAAGGGGGCGCAAGGGCCGGGCGGGACTGTTGGGATCTCTTACGCCA
CCAGGGTCCTGAACATTCCCGACAAGGCCACGTTGGCGGAGTGGGTTAGG
AAGGTCCCCGAGTACGAAGCCGCGCTTGCGGCAGAGGGCGGCAAGTTCAA
GGGATTGAAGAGCAAGAAGAACGCCAAGAACCGCATGTCGCTGAACACAG
GACGGGTCAGGACGAACCGGGAAGCCGAGCAAGCGATCGTGGACTGGATC
AATGATCTGCGTTCTGAGAGCATCTCGGCCCGCGTTTCGACGAAGATGCT
CAAGCACAAGGCCATCGAGCTCAACCCGACCTTCTTCGGGGAGAGGCCGC
TGGTATCCGACCTCGCGGGCAACCACAAGTACAAGAAAAAGCTGAGCCAG
TGGTGCAGAAGGTTTCTCAAGGTGTACCGCTTTTCTGTGCGAGCCGTCAC
CCGGCAAGGCCAGAAACTTCCTTCCGGCTGGCCCGTGATCGCCATGCAGG
CGATCAAGGAGTGGAGGAGCCTAAAGTACGACGTGCCTTCTGCGCTCGAA
CTTGCGGACGGAGTCGAATGCCTGGGGGTTGCGACGGTGGCGGGAGGCAG
CGCGAGCGGCGGCGGGGGTGGGAGTGGCGCTGGAGTTCTTTCGGGGCCGA
AGCTGAAGTTCGCCTTGGCGCAGATCGGCAACATGGATGAGACTCCTACG
TGGATGGAGAGCCCGGGGAGTGACACTGTGAACGTGAGTATTTCTTTTGC
CGTACTTTTCGCTCGTACTGCGTTAGATGTAGCAGTTCCCGTCCTTTCCT
CCGTCAACGATATTCCTCGGCCGTTTTGTTTTTTGGTGGGATTCCACGTG
TAGGTACGTAGTTTTTGTCGTTTCCTTCGGTTACTGTTCTCCGCTGTTTT
TTGTGATGTTTAATTGCAACCACTGTTGTCACTTTCCGAATCTTGACCAC
AACAATCGTCGCTAATTTCCACACGTTGACGTCGGTGATCGCTGCTCTTT
GGAAACCCGCAGGCCGTGGGTGAGAAGGAGATTGCTGTCAAAACCGGCGG
CAAGGAGAAGGTGCGCATCACTTCGGTCCTGACGTGCTTCGCCGACGGCA
GCAAGCTGCAGCCCCTCATCATCTTCAAGGGCCAACCCACTCCGAAGGGG
AAGTCCCCCGCCACCAACAGCATCGAACGCGAGTTCAAGACCTACAAGGA
CAAGAAGGGCTACGCCTACCCCCGAGGTCTCATCTACGCCGTCGACCCGA
AGGCATGGCACTCCCAGCGGGTGTTCAACGACGTGTGGGTCCCGCAGGTG
TGGAACCAGCGCCCGGGGCGGCAGGGCCGCCTGGGCGGCTACCGCCAGCC
TGACACGCTGCTGGCGTGGGACGACTACACCGTCCACAAGACGGACGCGT
CTAAGGAGGCGATGGCGAAGTCCAACACGACGCTGTTCCTCATCCCGGGA
GGCCTGACCCCCAAGCTCCAGCCGTGCGATGGCCTCGTCAACAAGATTTT
CAAGGAACACATGTCCAGGTTCTACGACGACCACATGGCTTCCAAGGACG
TCAAGCGCGACGAGCGCGGCTACCCGGAGGCCCCTTCGCGGGGGTTGGTG
GCACAGTGGGTGAAGAAGGCGTGGGATGCCTTGACCCCGGAGGAGATCCG
CTCGAGCTGGAGGAAGGCTGGCCTGCTGCTTCCCTTCGACGGGTCGGGAG
ACGAGGCCTGGGCCAACAAGGAGCTCGGCTCCAACGCCCAGGGAGAGCCC
CTCGACGCGCCGTCGGCCGGTGCGGACAAGGCGGACCCGTCGTCGGGAGG
CGAGAACTTGCTGGAGGTGCTGGAAATCGACGACGACGACGACACGGGCG
TGCCGGTGGTGGACATCAGCGACGACGAGGAGGGCGTGGAGCTTTGAGGC
ATCGGTAGCGATACTTGTGTTGAGAAAAGCTCGTGTTGTCCTTCTCATTT
TCTCTTGGCGTGCATTTCTCTCCTTCGTCGTCTTGGAGCGTGATTGCAAT
GTCGGCTGATTTCTTAGCCGTGTGGAGTGCAACGTTTGCTTGTTTCGTAG
TGTAGGTTTGTGGTTCGGGGTCTCCGATGTGTACTGGCTTTGCTCAACTC
TCTGTTGGCCGTACCTACCAGCAAGGTACGCAGCAGCCTGTTTTTTTTTG
TGAGGGGGCAGAACGGATGGCGCACTTTGTGGCCATCCCCCGACATCATA
TCGGGCGAGGTACCTTCGATTTAAAATACCGTTTTCCGATGCTCCATCAC
GCCGTCACGATTGCTGACATACGGTACAGTGTGTGAACTTTCTTCGGCGT
TGAGGGGGTTGAGTCATCGCCGAGGTCATGTGCCCAAGAGTTTCGTCAAC
CCCCTTGAGCCCCTTTTTGTGGTAGTGCAAAGCAGCGGCAAGTGTCGTAC
AGGCATTGCCATCACCCCCCCGCAATACCACACCCCTTCAGGGTGCGGCA
GCAGCGGTTCAACTCCACAAGCAGTGTATCACACCCCCTTTTCATCACAC
CCCCGAACACATCTTTGAGTGTTTCGACGAGTTATCACACCCCCTGTTTA
TCAC back to topCoding sequence (CDS) from alignment at Scaffold_61:33248..37051+ >EsuBft1055_5a-0001 ID=EsuBft1055_5a-0001|Name=EsuBft1055_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2169bp|location=Sequence derived from alignment at Scaffold_61:33248..37051+ (Ectocarpus subulatus male Bft15b) ATGGCAGCCGCCGGCTCGCCCCACCAGCAGCCAGTTGCTGACTCGCTCTC AGCAGCACGCACGAGTACCGCAGCAGGCGGGTCAACACGGACCAGCCAAG CCTCTCAGCTGGTGGTGGTGGACCAGGAGCCAAGCACTTCCGTCGTCACG GAACGATCAGAGGCGGCATCTACCGGTATGTCTGGAGCGCCGCCATCCGG AGCACCGGCACCAGCTCCAGCGCCGGCACCGGCTCCAGCGCCGGCACCAG CTCCAGCGCCAGGAAGTGTAGGATCGGCAGCAGCAACACCCACACCAGCA CCAGCGCCAGGAGCACCGGTGACCAACGATGGCTCACCCCGCGACACGAT GTTTCCCGGAGAGACCGAGTGGGGAGATGGGTTCGGCGGCGCTCTCTTCG GTACGCCGGCGCAGAACAAGGGCAAGCGGAAGAAAGGGCAGCTGGAGTTG GAGCCGCCGGACTTCGAGATTCCCAACTTTGGTGGTGGATCCCAAAGGAA GCGCTACCCTCTGCAGTTCAAGGTGAATGCTGTGCGGTACTCGCAGAAAA GGGTCAAGGGGGCGCAAGGGCCGGGCGGGACTGTTGGGATCTCTTACGCC ACCAGGGTCCTGAACATTCCCGACAAGGCCACGTTGGCGGAGTGGGTTAG GAAGGTCCCCGAGTACGAAGCCGCGCTTGCGGCAGAGGGCGGCAAGTTCA AGGGATTGAAGAGCAAGAAGAACGCCAAGAACCGCATGTCGCTGAACACA GGACGGGTCAGGACGAACCGGGAAGCCGAGCAAGCGATCGTGGACTGGAT CAATGATCTGCGTTCTGAGAGCATCTCGGCCCGCGTTTCGACGAAGATGC TCAAGCACAAGGCCATCGAGCTCAACCCGACCTTCTTCGGGGAGAGGCCG CTGGTATCCGACCTCGCGGGCAACCACAAGTACAAGAAAAAGCTGAGCCA GTGGTGCAGAAGGTTTCTCAAGGTGTACCGCTTTTCTGTGCGAGCCGTCA CCCGGCAAGGCCAGAAACTTCCTTCCGGCTGGCCCGTGATCGCCATGCAG GCGATCAAGGAGTGGAGGAGCCTAAAGTACGACGTGCCTTCTGCGCTCGA ACTTGCGGACGGAGTCGAATGCCTGGGGGTTGCGACGGTGGCGGGAGGCA GCGCGAGCGGCGGCGGGGGTGGGAGTGGCGCTGGAGTTCTTTCGGGGCCG AAGCTGAAGTTCGCCTTGGCGCAGATCGGCAACATGGATGAGACTCCTAC GTGGATGGAGAGCCCGGGGAGTGACACTGTGAACGCCGTGGGTGAGAAGG AGATTGCTGTCAAAACCGGCGGCAAGGAGAAGGTGCGCATCACTTCGGTC CTGACGTGCTTCGCCGACGGCAGCAAGCTGCAGCCCCTCATCATCTTCAA GGGCCAACCCACTCCGAAGGGGAAGTCCCCCGCCACCAACAGCATCGAAC GCGAGTTCAAGACCTACAAGGACAAGAAGGGCTACGCCTACCCCCGAGGT CTCATCTACGCCGTCGACCCGAAGGCATGGCACTCCCAGCGGGTGTTCAA CGACGTGTGGGTCCCGCAGGTGTGGAACCAGCGCCCGGGGCGGCAGGGCC GCCTGGGCGGCTACCGCCAGCCTGACACGCTGCTGGCGTGGGACGACTAC ACCGTCCACAAGACGGACGCGTCTAAGGAGGCGATGGCGAAGTCCAACAC GACGCTGTTCCTCATCCCGGGAGGCCTGACCCCCAAGCTCCAGCCGTGCG ATGGCCTCGTCAACAAGATTTTCAAGGAACACATGTCCAGGTTCTACGAC GACCACATGGCTTCCAAGGACGTCAAGCGCGACGAGCGCGGCTACCCGGA GGCCCCTTCGCGGGGGTTGGTGGCACAGTGGGTGAAGAAGGCGTGGGATG CCTTGACCCCGGAGGAGATCCGCTCGAGCTGGAGGAAGGCTGGCCTGCTG CTTCCCTTCGACGGGTCGGGAGACGAGGCCTGGGCCAACAAGGAGCTCGG CTCCAACGCCCAGGGAGAGCCCCTCGACGCGCCGTCGGCCGGTGCGGACA AGGCGGACCCGTCGTCGGGAGGCGAGAACTTGCTGGAGGTGCTGGAAATC GACGACGACGACGACACGGGCGTGCCGGTGGTGGACATCAGCGACGACGA GGAGGGCGTGGAGCTTTGA back to top
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