EsuBft964_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft964_8a-0001
Unique NameEsuBft964_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_604contigScaffold_604:322480..328210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LP04
ProteomeIdEsuBft964_8
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon7
Max annot lvl2759|Eukaryota
Length146
Hectar predicted targeting categorysignal peptide
Evalue1.05e-168
EggNOG OGs28MTK@1|root,2QUBV@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_007090.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft964_8aEsuBft964_8aEctocarpus subulatus male Bft15bgeneScaffold_604 322480..328210 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft964_8a-0001EsuBft964_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_604 322562..327569 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft964_8a-0001-exonEsuBft964_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_604 322480..322658 +
EsuBft964_8a-0001-exonagat-exon-110616Ectocarpus subulatus male Bft15bexonScaffold_604 323562..323659 +
EsuBft964_8a-0001-exonagat-exon-110613Ectocarpus subulatus male Bft15bexonScaffold_604 324075..324167 +
EsuBft964_8a-0001-exonagat-exon-110615Ectocarpus subulatus male Bft15bexonScaffold_604 324804..324878 +
EsuBft964_8a-0001-exonagat-exon-110618Ectocarpus subulatus male Bft15bexonScaffold_604 325494..325574 +
EsuBft964_8a-0001-exonagat-exon-110614Ectocarpus subulatus male Bft15bexonScaffold_604 326417..326582 +
EsuBft964_8a-0001-exonagat-exon-110617Ectocarpus subulatus male Bft15bexonScaffold_604 327439..328210 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft964_8a-0001-exonagat-five_prime_utr-15330Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_604 322480..322561 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft964_8a-0001-cdsEsuBft964_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_604 322562..322658 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft964_8a-0001-exonagat-three_prime_utr-23563Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_604 327570..328210 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft964_8a-0001 ID=EsuBft964_8a-0001|Name=EsuBft964_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1464bp|location=Sequence derived from alignment at Scaffold_604:322480..328210+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGTCAAAACACCTCCACGAATGCCACGGCTCTGCTGCTACTGCTCAATCT
CTCTTGGCCACTATCCTTTCGTGTGTTATACTATGAGGGCGCTGGCAGTG
TTGACTTTTGCGGCCGCGGCCATCCCACTCAATGCCCAGTTCGGCATGGC
GCCCAATCCAAAGAGCGAACCAGTCAAAGGCGATCTGGCCGCAATTAAGT
GCGGGGTCTGCCAAGGCCTGGCGGAGCACCTTTACGAGAAGGTGGCGGAG
ATGCGGGAGGCGGCGCCTTTCGGAAAGGTCCATGAAGACGATATCTCGAC
GGTGATAGAGGGAGCCTGCGACCCCGCAACTAAGGAGGGTCGATGGATCA
CGGAGTACGACATCGTGGAGGAGGGGGGATATCTCGAGTTGAAGAAGCAG
GACAGCTTTTCCCACTGCAAGGAAGAGTGCGAGACCATTGCCAAGAGCTG
CACGGTGCTGGTGGATGACGAGTTGGACGTTGAGGAGGTGGTTGTGGCAC
TATGGAAGAACAAGCTGGGATTGTCGGAGCTTCAAAAGGCAGCTTGCGGG
GAGTGGAGCGATCGGTGCTCGGGGAAGAAGCGCGTGAAGGCTCCGAAGAA
CCGCCAGGATTACGAGTTCGAACCGAAGACGGCGAAGGACTTCGAGGTGG
CGGAGGCGATGGCGAGGTTGCAGAACTCAATGGGCGGGATGGGTGGACCG
GGAATCTACGGCCCGGATGATCTCGCTGCGATGGACGCGATGATGTCGCA
GATGGGCGACATGGGTCAAGACCCATTCGCGGACGACTTTGACATGGGCG
GAATGGGCGGCATGGAGTTCTGAAGGAGTTTAGCATGACGTTTTACTAGT
GTACGCCCGATCTGGTGGAGGAACGATACATTTCTGTTTTGTAGACTACG
GGCGTTTCGGCCGATGAAGGGGATTCACATGGGGTCCAAAGTAGGTTTTG
TGTGTACAAGTGGCACTGGTTCCTGTTGTTGTTGAAGGGGTGTGGCAAGG
TTGATGTTCGGCCTTGGCCAGGTGTGTGGGAGGGACAGAGGGTGCTCAAT
GGAGGGTAGGTAACATCGTGTTGCGTTTGTGGTGTGGTATGCATATGGTG
ATCGTGTTGTTGGTGGTTGAAGGGAAGGTGTTGTTTTAGTGAACGGATCC
TCCGCGGTTTGTTGCACAATTCAGGGAGGACGATAGGTGTTCTCCTTCCC
TCGGCAATGTGAGATGACAGTTTTTTTTGTGTCTCATGACAGCAAGGGTG
TGACTCCTTTCTCTCGTCCGTGGTTACGACCGTCTCCGCGCCCTAACCCC
ATTAGACTACGTCCGGACATGCCATGTTCCGAAACCCGCATGACAGCAGT
GTTTCGGGGTCACAGAGGGGCGACCCCACTTGAGAACCTGGGAAATTCCG
GCTCACGAAAATACTACTTTAATGTTGGCCTATCGTAACATGTGCTCACA
TCCGTAAGGGTCCT
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protein sequence of EsuBft964_8a-0001

>EsuBft964_8 ID=EsuBft964_8|Name=EsuBft964_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=246bp
MRALAVLTFAAAAIPLNAQFGMAPNPKSEPVKGDLAAIKCGVCQGLAEHL
YEKVAEMREAAPFGKVHEDDISTVIEGACDPATKEGRWITEYDIVEEGGY
LELKKQDSFSHCKEECETIAKSCTVLVDDELDVEEVVVALWKNKLGLSEL
QKAACGEWSDRCSGKKRVKAPKNRQDYEFEPKTAKDFEVAEAMARLQNSM
GGMGGPGIYGPDDLAAMDAMMSQMGDMGQDPFADDFDMGGMGGMEF
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mRNA from alignment at Scaffold_604:322480..328210+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft964_8a-0001 ID=EsuBft964_8a-0001|Name=EsuBft964_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5731bp|location=Sequence derived from alignment at Scaffold_604:322480..328210+ (Ectocarpus subulatus male Bft15b)
GGTCAAAACACCTCCACGAATGCCACGGCTCTGCTGCTACTGCTCAATCT
CTCTTGGCCACTATCCTTTCGTGTGTTATACTATGAGGGCGCTGGCAGTG
TTGACTTTTGCGGCCGCGGCCATCCCACTCAATGCCCAGTTCGGCATGGC
GCCCAATCCAAAGAGCGAACCAGTCAAAGGTGAGTCGCCTGTGACTGCTG
CTGTCGCATCCGCTCGCTCGATCTGCGATCCTTCTTTCCCCCCTGTTTTG
GCCGGTAGATTTGCGATAATGTCTTGGGGGGAGGCTGGTGCCACTGAGCA
CGGTCGTAGCAGAACAGGCGGAAAACTCAGGTAGTCGCACGTGTTGTTGT
ATGGGACGGGACGTCAACGAGGTACAGCAAAAGTTCGGGTCTTTTTTGAC
AGGGGGTACGTCCGCTCGTCGGTCATTCCTCATGGCATGCCATGTGTCGT
GGGCCCCCTCAGCTGGCGGATGAATTCCCGTGGTTAGATGTCTCTAGCGG
GGGGGTGCTGAGAGAGATGGGCTAAGGAATTCTCGCTGACATCTTTCGGT
TGTTGTTTCCGTCAGCGTGTGGGCCAAAGTGGGTGAGACAACGGCGGACT
AAACTACGAATAGCAGTCCACCCACGTACATTAGACTCCAAGTATCGTCA
AACGTTCTCGAAAGCATCGACAACATCGTCTCTGCGGACATGACCTCCTT
GATCGCGTAACATTTCCAAGTTGATATACAGCGGTGTGTGAGATGTACAG
CATATCCACTACGCTACAAGTCAGCCGCTGACTTGTACCATAGTGGATAT
GCTGTTCTTCTTAACAAGACGGTGTGCTGCACTCATTCACTGATTGCTGC
ACTGATTGCTCCGTTGTACTGGGCCAAGCAATCGTGTCCCTTACTCGGGC
GTGATGGGGTAGGGATGTTCGCCGCTGGTTGCACGTCTCTCTCTTGCCGC
CGCCGCTCGCATCGCCGTACATACACACCCAGGCTCCCCTTGCGGTCGTG
GAAGCATGTTTCTGAGTATATCCCTACCCCGCACCTGACTGAGTTCCTCT
ACGTTCTCCTCGGTCTCCTCCCTCCATTGCAGGCGATCTGGCCGCAATTA
AGTGCGGGGTCTGCCAAGGCCTGGCGGAGCACCTTTACGAGAAGGTGGCG
GAGATGCGGGAGGCGGCGCCTTTCGGAAAGGTGTGCGTGTACTTGACAAC
GTTGTTGCTGTTGTTGTTATTTAGTGCCGTCCACACTCTCGCTGCCCCGG
CGCCGGGAAACCCACAGCGCTGCAAATATATTGTTGGATTGGACGACCGC
CGCAGGGGTCATGAGCCCTCGTCTTTGTCCGTGGGACTCCTCTCTCGCTG
TGTTCGGTTTCCCCGCATTCTGCCTACATCTGGCGTGCGTGCATACCAAC
TCGTCGTTTCGGAGCTCCGTCTCCAAAGAAAAGGGAGTGCTGCTGATACC
ATTATACTGCTGTCTGTGGTGTGGGCTTCGTGATACTGCTGTGCGTGAGT
AAGTAGAAGTACAGCAGTAGTAGGACTGCTAAAGCGGCTTGATACTGCTT
TTTTTGACCCCCTCACGCCGCCGCTGAATACCACAACGCCCAAAGGTCCA
TGAAGACGATATCTCGACGGTGATAGAGGGAGCCTGCGACCCCGCAACTA
AGGAGGGTCGATGGATCACGGAGTACGACATCGTGGAGGTGACGAAGGAA
TGCCATGATCATTCGTACCCCGCGCGCTCGGTAGGCCTGGCCCCCCTTGC
CATTTAGTCATCCGGACCTTGACCCACACAACCCGCGGTGTTGCTTTGGT
CACCAATCACCAAGGGATCACGAGCCCATCGAAATTCTCGTCGTTGCCGT
GCGTTGATATGTTGGCTTGTGAGGAGGCCCTTTCGCTGTCGCGTTTTTTT
CCTACCCGCAGAGAAGTGTGTCGTGACGATTTGGACGTTTCGATAGATAT
ATACATGTCGACGTTTCCACGTGTCGTGTTTTCCCAAAATATGTTGCATA
CATTCGGCGTATTCGTGTCCCCTCGTTTGCTCTGGTGTGAGTAGAACTGT
CCGCAACCTCGGTTTTGGTATGGGGTGGTACAGGTATGACTTGCAGACTG
CCAAAAGCGTGCAGTTAGAGACGAATATGAGGTACCAACGATCGGTTGGC
CATTGCTCGAAGCACTGGGTATTGGTCTGTGCGTCATTGCCGAGCTTGTC
TCGTCTGTTTTCTCCCACGTGCCTTGAGTCAAATCAATATGGCTGCAATG
GCTTCGGACGATGACGACTGTTGTATATATGCTTGTGCTGTGTGTTCATG
TTGGTCTCTCTCTTGGCTTTGCAGGAGGGGGGATATCTCGAGTTGAAGAA
GCAGGACAGCTTTTCCCACTGCAAGGAAGAGTGCGAGACCATTGCCAAGG
TACGAATTGCTTGGGAGAGGGCTTGAGGGTTTTGTGTTTCGGAATCGGGG
AGAGTCTTCTGAAGCTGCCACTGCTGTGTCACTTCTCCGTTTGGGCCCCA
TGGCAAGCACCTTGAAGCAGCAGTATTTAAGGAAACACTGTTACAACAGC
TATCACTCCGAAAACATCCACCACTCCCCAACGCGTTTGTTTCATATCTA
CGGGCGTAGCGTAGCGTACCACAGAAGTTACACGGCGGTTAGGAGGTACT
TAAGGACTCGCTGTTATTCTTCATGCCGAAAGTACTTGGCCGCCCATTCA
TCGCTTGCTGTTTCTACTGCTCCTGCACACAACTGGTTCTGCGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCCGGCGCCTTATGTGGAACTTGCGGAACAATCGAACCT
TTCTTCTACACCAGAGCTGCACGGTGCTGGTGGATGACGAGTTGGACGTT
GAGGAGGTGGTTGTGGCACTATGGAAGAACAAGCTGGGATTGTCGGTGAG
CACACCCACAGGCGTTCGGCTCTCAATGCTCGGTAGCTTTCCACAGCGGT
GTGTCATTTGTGGCATTTGCGCTGCTCCTGGACTGCTGTGCCGCCAATAC
TCTTTTGTCCTTGTGACGCCGTCTTGTCGACCACAAGCGTATTGTTTGTG
TTTAACAGAACAGACGCCGGCGTGCAGGAAGGGCTCAGGACCCCTCTATG
TGATATAACAGCGTGCCCAGAGAGATGAATCGGCAATGGGTAACGGTGAA
CGATTATGGTTGTGGAACGAGTGCAGTAGACGACAGGAGAGCACGCTTGC
CTGTTTTTCTGGGGGTTGGCATGCTTGCGTTGGCAGTGTATCTACTATAA
TTTGCTCTGGTTGGGACGAGCTGCTGTCCAAAGGGTTTATCTTCATAGGT
TGTCGGTGCAAGCCTAGAGGAACGTGGCAGCACACCCCCGCAGCACAAGA
CCTCGGTAGAAACTCGAAACGTGTTCGTCCCGCTGCTTGAACGGATCAAG
GCTTGCATTGCCAGGCCAACCGACCGCCGGCACGATGTAGTATAGACTGC
AGGTCACGCTACCCGCCACACACACAATCGTGAAAGGTTCTCGGCCGAGC
GGCAGTGGCAAGGGTCGCGTCGCTCTACCTTAGCAAAGTGTTCGTGATTC
CTCTGGGTCTGGCCTAGGGAGCTGCACCCCTTCACCACCTCTATCCCTCC
AAGTCGCGTGCCAACCCCACCCTCTCTTAACCAGTTCTAGCCCAAACCCA
CGCCGTGTTTCTCGTGTGTCGGGGGACACGTTCGGGTTTCGAAAAACCTG
ACCGGACGCGCGTGTCCCGTGAACGCCATTTGCGCAGGAGCTTCAAAAGG
CAGCTTGCGGGGAGTGGAGCGATCGGTGCTCGGGGAAGAAGCGCGTGAAG
GCTCCGAAGAACCGCCAGGATTACGAGTTCGAACCGAAGACGGCGAAGGA
CTTCGAGGTGGCGGAGGCGATGGCGAGGTTGCAGAACTCAATGGGCGGGA
TGGGTGAGGAAAAAAAGCATATCTTGCGTTGATGTTGCCTTGTGTGTCGT
TTGGTCGGTGGCTTGACTTCGTTCATGTATGTACCATCGGTTTTCAACAC
GAACCGAGCGGGTCTGGCAATATTGTTAGTGAACACCACAAGCCCCATGT
TTGTGTATTTGTTTTCTCAGGGGCAAACATACCCGCCGTGACACTGGTGC
TAGTGCGAATTCCCGCGCTACAGCAGGAACACGTAGGCTGCAAGTCTGTG
TGCAGTGCAACATCCGAGCGCTCGCTTGAAGATCATCGTGGATTCAAACT
CTTATTTAGTTTGTCGTATCATGCCTCATCTCCTTTTGCTTGATACCGGG
CTGAAATGCGTGTCTAGGGAATGATGGGCACGAGGGATGGGCAGGTCGTG
CAATAGCGGGGCAGGGAGTACTCACAGAATTCAATGTCTAGCTGGGTGTG
TCAGCTCTGACATGTGGCGGGTAGCACTACTGTCGGACCAATTGGGATGC
GAAGCCCCTTTCGCACGAGCAAAACGAACGGCAGTGTTACGTCGCGGGAA
GATCACAGGCGTGATACGCGGCTGCCTGGCTGGCTGGTAACTGAACCATG
GCAACAAGAAACGACGAGATCGACCCCCATCCTCGTCGCCGCCGTCCCCC
AAACGGTGCTAAGGCCACACGAAGCTTCAGCCACAGAACGGAAGTGACAG
TCTTTCCGCCCTTTACCACTGAAACAGGTGAAACAAACCGCGTCATGATC
ACTCTTTACTTCAGCCACAGAACGGAAAATGATAGCCACGCCAGTTGGAA
TCGCTGAAGCCCACCGACCAACGCCAAACACTGTAATCCACAACCAAACC
CCCCCACAGGTGGACCGGGAATCTACGGCCCGGATGATCTCGCTGCGATG
GACGCGATGATGTCGCAGATGGGCGACATGGGTCAAGACCCATTCGCGGA
CGACTTTGACATGGGCGGAATGGGCGGCATGGAGTTCTGAAGGAGTTTAG
CATGACGTTTTACTAGTGTACGCCCGATCTGGTGGAGGAACGATACATTT
CTGTTTTGTAGACTACGGGCGTTTCGGCCGATGAAGGGGATTCACATGGG
GTCCAAAGTAGGTTTTGTGTGTACAAGTGGCACTGGTTCCTGTTGTTGTT
GAAGGGGTGTGGCAAGGTTGATGTTCGGCCTTGGCCAGGTGTGTGGGAGG
GACAGAGGGTGCTCAATGGAGGGTAGGTAACATCGTGTTGCGTTTGTGGT
GTGGTATGCATATGGTGATCGTGTTGTTGGTGGTTGAAGGGAAGGTGTTG
TTTTAGTGAACGGATCCTCCGCGGTTTGTTGCACAATTCAGGGAGGACGA
TAGGTGTTCTCCTTCCCTCGGCAATGTGAGATGACAGTTTTTTTTGTGTC
TCATGACAGCAAGGGTGTGACTCCTTTCTCTCGTCCGTGGTTACGACCGT
CTCCGCGCCCTAACCCCATTAGACTACGTCCGGACATGCCATGTTCCGAA
ACCCGCATGACAGCAGTGTTTCGGGGTCACAGAGGGGCGACCCCACTTGA
GAACCTGGGAAATTCCGGCTCACGAAAATACTACTTTAATGTTGGCCTAT
CGTAACATGTGCTCACATCCGTAAGGGTCCT
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Coding sequence (CDS) from alignment at Scaffold_604:322480..328210+

>EsuBft964_8a-0001 ID=EsuBft964_8a-0001|Name=EsuBft964_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=741bp|location=Sequence derived from alignment at Scaffold_604:322480..328210+ (Ectocarpus subulatus male Bft15b)
ATGAGGGCGCTGGCAGTGTTGACTTTTGCGGCCGCGGCCATCCCACTCAA
TGCCCAGTTCGGCATGGCGCCCAATCCAAAGAGCGAACCAGTCAAAGGCG
ATCTGGCCGCAATTAAGTGCGGGGTCTGCCAAGGCCTGGCGGAGCACCTT
TACGAGAAGGTGGCGGAGATGCGGGAGGCGGCGCCTTTCGGAAAGGTCCA
TGAAGACGATATCTCGACGGTGATAGAGGGAGCCTGCGACCCCGCAACTA
AGGAGGGTCGATGGATCACGGAGTACGACATCGTGGAGGAGGGGGGATAT
CTCGAGTTGAAGAAGCAGGACAGCTTTTCCCACTGCAAGGAAGAGTGCGA
GACCATTGCCAAGAGCTGCACGGTGCTGGTGGATGACGAGTTGGACGTTG
AGGAGGTGGTTGTGGCACTATGGAAGAACAAGCTGGGATTGTCGGAGCTT
CAAAAGGCAGCTTGCGGGGAGTGGAGCGATCGGTGCTCGGGGAAGAAGCG
CGTGAAGGCTCCGAAGAACCGCCAGGATTACGAGTTCGAACCGAAGACGG
CGAAGGACTTCGAGGTGGCGGAGGCGATGGCGAGGTTGCAGAACTCAATG
GGCGGGATGGGTGGACCGGGAATCTACGGCCCGGATGATCTCGCTGCGAT
GGACGCGATGATGTCGCAGATGGGCGACATGGGTCAAGACCCATTCGCGG
ACGACTTTGACATGGGCGGAATGGGCGGCATGGAGTTCTGA
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