Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 6500.XP_005092035.1 |
| ProteomeId | EsuBft964_2 |
| Protein domains | SSF56672 |
| Protein domains | PTHR19446 |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | line-1 retrotransposable element orf2 protein os:homo sapiens pe:1 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 33208|Metazoa |
| Length | 1045 |
| Hectar predicted targeting category | other localisation |
| Evalue | 6.89e-22 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Ribonuclease H protein |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft964_2a-0001 ID=EsuBft964_2a-0001|Name=EsuBft964_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1045bp|location=Sequence derived from alignment at Scaffold_604:270747..271791- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGCTGTACAAGAAGGGTGACCGGTCCAAGTGTAACAACTACAGGGGGATT
TCGCTAGTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCAACCG
TCTAAGCCCCTTCTGCGAAGCCAATATCATCCTCCCGGAGGAACAGTGCG
GATTTCGACCCGGGGGATCCACCGTCGACATGCTGCTCGTCGTGCGCCGC
CTCCAGGAGCTGGGGCGGACAAAGAAAATACCGCTCTACATGTGCTTTGT
CGACTTGAACAAGGCGTGTGATTCGGTGGACCGAGAGATGCTATGGAAGG
TGCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAC
TTCCCCGATGGAATGCGGGCCCGTGTGCGCATGGACGACGGAGAACTATC
GGACTGGTTCTTCGTGACACAGGTCGTGCGACAAGGATGTGTGCTATCCC
CACTGCTGTTCAACATCTTCTTCGCCGAGGTCCTCGAGGGCGTTGTCATC
CGATTCAGCGAGGATGACGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGA
GGGGAAGACGGTAGCGGGGGGGGGGAAGGAGTACGGAGGGCAGTATGGGG
GATGCTGTATGCCGATGATGCCGGCGTCGTTTCGAGGTCTGCAGAAGGAC
TGGCGAGAATGATGACCATCATCGTTGAGGTGTTCGGGGAGTTCGGGCTA
ACGGTGTCGGAGAAGACAGAGACGCTCCTGATGCGCGCGAAGGACAAGTC
GATTACAACATCACAGCCCGCCCCGCCTCCACCGCTGACCATCGAAGCCG
CGGGACAGAAATACGCCCAGACGACCTAGTTACGGTACCTCGGTGGCCTC
GTCAACGAACATGACGACCTCACCAGGGAGATCAACTACAGGAGGAGCAG
AGGAGCGTGGGCGTGCCTCAGCCGATATGGCCGGGAGCTCTTTGTTCGAC
AGACCGCAAGCGCCATTCCGACTTAAGATCCGCCTGCTCAAGGCGGAGGC
GATGGAGGCACCACTGCTGTACGGCTGCATGACATGGTCACCGCT back to topprotein sequence of EsuBft964_2a-0001 >EsuBft964_2 ID=EsuBft964_2|Name=EsuBft964_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=160bp
MLLVVRRLQELGRTKKIPLYMCFVDLNKACDSVDREMLWKVLARAGIPAK
LIEVIRHFPDGMRARVRMDDGELSDWFFVTQVVRQGCVLSPLLFNIFFAE
VLEGVVIRFSEDDVVLRSLVCLEEGKTVAGGGKEYGGQYGGCCMPMMPAS
FRGLQKDWRE back to topmRNA from alignment at Scaffold_604:270747..271791- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft964_2a-0001 ID=EsuBft964_2a-0001|Name=EsuBft964_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1045bp|location=Sequence derived from alignment at Scaffold_604:270747..271791- (Ectocarpus subulatus male Bft15b)
TGCTGTACAAGAAGGGTGACCGGTCCAAGTGTAACAACTACAGGGGGATT
TCGCTAGTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCAACCG
TCTAAGCCCCTTCTGCGAAGCCAATATCATCCTCCCGGAGGAACAGTGCG
GATTTCGACCCGGGGGATCCACCGTCGACATGCTGCTCGTCGTGCGCCGC
CTCCAGGAGCTGGGGCGGACAAAGAAAATACCGCTCTACATGTGCTTTGT
CGACTTGAACAAGGCGTGTGATTCGGTGGACCGAGAGATGCTATGGAAGG
TGCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAC
TTCCCCGATGGAATGCGGGCCCGTGTGCGCATGGACGACGGAGAACTATC
GGACTGGTTCTTCGTGACACAGGTCGTGCGACAAGGATGTGTGCTATCCC
CACTGCTGTTCAACATCTTCTTCGCCGAGGTCCTCGAGGGCGTTGTCATC
CGATTCAGCGAGGATGACGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGA
GGGGAAGACGGTAGCGGGGGGGGGGAAGGAGTACGGAGGGCAGTATGGGG
GATGCTGTATGCCGATGATGCCGGCGTCGTTTCGAGGTCTGCAGAAGGAC
TGGCGAGAATGATGACCATCATCGTTGAGGTGTTCGGGGAGTTCGGGCTA
ACGGTGTCGGAGAAGACAGAGACGCTCCTGATGCGCGCGAAGGACAAGTC
GATTACAACATCACAGCCCGCCCCGCCTCCACCGCTGACCATCGAAGCCG
CGGGACAGAAATACGCCCAGACGACCTAGTTACGGTACCTCGGTGGCCTC
GTCAACGAACATGACGACCTCACCAGGGAGATCAACTACAGGAGGAGCAG
AGGAGCGTGGGCGTGCCTCAGCCGATATGGCCGGGAGCTCTTTGTTCGAC
AGACCGCAAGCGCCATTCCGACTTAAGATCCGCCTGCTCAAGGCGGAGGC
GATGGAGGCACCACTGCTGTACGGCTGCATGACATGGTCACCGCT back to topCoding sequence (CDS) from alignment at Scaffold_604:270747..271791- >EsuBft964_2a-0001 ID=EsuBft964_2a-0001|Name=EsuBft964_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=483bp|location=Sequence derived from alignment at Scaffold_604:270747..271791- (Ectocarpus subulatus male Bft15b)
ATGCTGCTCGTCGTGCGCCGCCTCCAGGAGCTGGGGCGGACAAAGAAAAT
ACCGCTCTACATGTGCTTTGTCGACTTGAACAAGGCGTGTGATTCGGTGG
ACCGAGAGATGCTATGGAAGGTGCTGGCCAGGGCCGGGATTCCCGCGAAG
CTGATCGAAGTCATCCGCCACTTCCCCGATGGAATGCGGGCCCGTGTGCG
CATGGACGACGGAGAACTATCGGACTGGTTCTTCGTGACACAGGTCGTGC
GACAAGGATGTGTGCTATCCCCACTGCTGTTCAACATCTTCTTCGCCGAG
GTCCTCGAGGGCGTTGTCATCCGATTCAGCGAGGATGACGTTGTTCTGCG
GAGCCTGGTGTGCTTGGAGGAGGGGAAGACGGTAGCGGGGGGGGGGAAGG
AGTACGGAGGGCAGTATGGGGGATGCTGTATGCCGATGATGCCGGCGTCG
TTTCGAGGTCTGCAGAAGGACTGGCGAGAATGA back to top
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