EsuBft329_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft329_6a-0001
Unique NameEsuBft329_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_604contigScaffold_604:207091..209345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft329_6
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length176
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft329_6aEsuBft329_6aEctocarpus subulatus male Bft15bgeneScaffold_604 207091..209345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_6a-0001EsuBft329_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_604 209142..209345 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_6a-0001-exonagat-exon-87635Ectocarpus subulatus male Bft15bexonScaffold_604 207091..207653 -
EsuBft329_6a-0001-exonagat-exon-87637Ectocarpus subulatus male Bft15bexonScaffold_604 207696..207717 -
EsuBft329_6a-0001-exonagat-exon-87638Ectocarpus subulatus male Bft15bexonScaffold_604 207796..208018 -
EsuBft329_6a-0001-exonEsuBft329_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_604 208256..208433 -
EsuBft329_6a-0001-exonagat-exon-87636Ectocarpus subulatus male Bft15bexonScaffold_604 208566..209345 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_6a-0001-exonagat-three_prime_utr-12914Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_604 207091..207653 -
EsuBft329_6a-0001-exonagat-three_prime_utr-12915Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_604 207696..207717 -
EsuBft329_6a-0001-exonagat-three_prime_utr-12916Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_604 207796..208018 -
EsuBft329_6a-0001-exonagat-three_prime_utr-12917Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_604 208256..208433 -
EsuBft329_6a-0001-exonagat-three_prime_utr-12918Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_604 208566..209141 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_6a-0001-cdsEsuBft329_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_604 209142..209345 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft329_6a-0001 ID=EsuBft329_6a-0001|Name=EsuBft329_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1766bp|location=Sequence derived from alignment at Scaffold_604:207091..209345- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCAAGGCAAAACCACTGATTTTTCTCTCACCGTACATTCCCGAGC
CGCCTTGCTGCTGGTCGGGTCTAGCACGCTTCATCTCCGCGCCGCCGCCC
CCGCCGCCACCGCCGCCACCCCCGCCCGGGTAGCCTCCCGCGCCCTGGTA
TGGAGCGTTGTCGTACGGCCTCTTGTGCATACCCCCGCCGCCGCTGTGGT
ATGACATGGTTATTTAGTTCCCGAGAGAAGAGAGGCACGAAAGAGTCTCG
TGCTGAAATGAAGGACGGGGTCGTCTGGTCTTCGCGCGAAAAACTTTTTC
CGGATCCGCCAAAGAGAAGGGTTGGATCTGATCGGAAATCTGCTGCTCTG
TCGCTCGTTCTCGCAGCCCTTGTCGAGCCAACGCTCCTAGATCTCTCTCG
CGCGCCTGCGTTGTTGTAGAGAACAGCACCTGGCGTTGCGGGGCGATCGA
ATGTTTTTGTCTATCAGTCTCCGGCGCCTCCAGCTGCCGCCAATTTGAGG
GGCACCCGCGAAATGTTTTTACAGGGGTGTACTTCTCCACTCATGCATTG
ACGGACTCCCTGAGCAGCGCTCGAAGCAGCAGCAGGCACAGTGTTATTTG
GTTTATAATTTTTTTTTTTTTTATTGGTCCTTGCTCCGTCAGTACGAGAC
GCCCACCGCGCGGTTGGTGTCGCAGAAGAGACGATCCGCTAGAAGGTGCA
CTGCTGAAGGGTAGAGGAGAAGAAACGACGCGAATCGGTCCACAAGGCCC
GACGTAACACTGGTCAAGGCGGCTAAACAGGCATAATCGAACCTCGGTAT
ACTGTTGTCACACTCACACTTGAGGTGCTGGTGCAAGTTTTGGGCGTTCG
GTAGCTATCTGTGCTTCAAACCGAAGCTACCTCGCAAGAGGGCCTCAGCA
GGGCTTCAACACGCGGAGCATCTCGGTGCAGTCGGTGCAGCAGCGGCACC
AGGCCCAGGGGAGCTTCGGCGATGCTTCGCATGTGACCGCCCCGGTAGCC
GCGACGGGTGCTCGACCAATTGGCAGCACGTGGTGGACTCCGAATACTGG
GCGGAGCTGGGCGAGTGGTCTGCAACGGTAGGGGAAGGGTGGACTCATGA
GCGCGACCTTGTAGGAGACCCTCTCAAGGCGGGAGAGTGCATCTGTCGCC
GCGCCGACTGTGTGGTTAATTTGTACCAAAGGTACCCGTCGACGGGCTCC
CAGGTGACTCATGCGTCCTGTCATATGCATCGATCTGGGCGAACTCTAGA
ACGTTGAAATTGTAGGAAGACGCGACAACGTTGACCCCCGTGAAAACTTT
CACCCCGTTCTATTTTTTCTGGTCAAGTTATCCTTTCTACGTTCCCACGT
GACTACGTAGATATGTATGTGAGTTTCTGGGATCGCGACCGTCACCATGT
GCTGTTGATGGTGTAGTATTCTACCGAGTGGTGGACGTCCCATCTCTCAA
CCTTGCATCGGTAGCCCTCGCCTTACTCCTTATTTCTCGAGTGGCATTGT
TCCCTTTTCCTTTGTTTTGGTTCTCACATAAGAAAATGGTAAGTAAGAGG
ATGCTGTGGTCGTGCATCGTTGTCTGTCCTGCCCGTGTTGGTCGAAGAGT
CTCGTGGCAGGAGAGAGGGAGTCGACCCCACCCCCACAAGTCAACGGCAA
AAGATATGTAGAGCGCCCGCGAGGAGGGTGGAAACAAACATATTTATGCT
GCCAGCATGCCAGCATACTCCCTCTGCCAGGTAACACCTAACAAAATGAA
GAAATATTAAGTACGA
back to top

protein sequence of EsuBft329_6a-0001

>EsuBft329_6 ID=EsuBft329_6|Name=EsuBft329_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=67bp
MNQGKTTDFSLTVHSRAALLLVGSSTLHLRAAAPAATAATPARVASRALV
WSVVVRPLVHTPAAAVV
back to top

mRNA from alignment at Scaffold_604:207091..209345-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft329_6a-0001 ID=EsuBft329_6a-0001|Name=EsuBft329_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2255bp|location=Sequence derived from alignment at Scaffold_604:207091..209345- (Ectocarpus subulatus male Bft15b)
ATGAATCAAGGCAAAACCACTGATTTTTCTCTCACCGTACATTCCCGAGC
CGCCTTGCTGCTGGTCGGGTCTAGCACGCTTCATCTCCGCGCCGCCGCCC
CCGCCGCCACCGCCGCCACCCCCGCCCGGGTAGCCTCCCGCGCCCTGGTA
TGGAGCGTTGTCGTACGGCCTCTTGTGCATACCCCCGCCGCCGCTGTGGT
ATGACATGGTTATTTAGTTCCCGAGAGAAGAGAGGCACGAAAGAGTCTCG
TGCTGAAATGAAGGACGGGGTCGTCTGGTCTTCGCGCGAAAAACTTTTTC
CGGATCCGCCAAAGAGAAGGGTTGGATCTGATCGGAAATCTGCTGCTCTG
TCGCTCGTTCTCGCAGCCCTTGTCGAGCCAACGCTCCTAGATCTCTCTCG
CGCGCCTGCGTTGTTGTAGAGAACAGCACCTGGCGTTGCGGGGCGATCGA
ATGTTTTTGTCTATCAGTCTCCGGCGCCTCCAGCTGCCGCCAATTTGAGG
GGCACCCGCGAAATGTTTTTACAGGGGTGTACTTCTCCACTCATGCATTG
ACGGACTCCCTGAGCAGCGCTCGAAGCAGCAGCAGGCACAGTGTTATTTG
GTTTATAATTTTTTTTTTTTTTATTGGTCCTTGCTCCGTCAGTACGAGAC
GCCCACCGCGCGGTTGGTGTCGCAGAAGAGACGATCCGCTAGAAGGTGCA
CTGCTGAAGGGTAGAGGAGAAGAAACGACGCGAATCGGTCCACAAGGCCC
GACGTAACACTGGTCAAGGCGGCTAAACAGGTACGCCGGGCACTCGCAGA
TGGTATCCTGTTTTCTTTTTGACCCCCCCTCAAAAGCCCCCTGGGCAGCA
GGCTGCATGCCACAGCAGGCTGCGTGTTCACAGAGCCGTAGGAGCCTCGT
CGTCGCCAACAGGCATAATCGAACCTCGGTATACTGTTGTCACACTCACA
CTTGAGGTGCTGGTGCAAGTTTTGGGCGTTCGGTAGCTATCTGTGCTTCA
AACCGAAGCTACCTCGCAAGAGGGCCTCAGCAGGGCTTCAACACGCGGAG
CATCTCGGTGCAGTCGGTGCAGCAGCGGCACCAGGCCCAGGTTTGCCTTA
CGAGGAGAATCTTGCGGTCTCAGCGGGTGCGTCGTATAGGTCAGGGTCTG
TACTTGCTCAGGCTGAAACAGCATCGAGGATTACCAATTGTAGACGCCAA
TACCGGCGATTCGGCCAGCAGCTATATACCGCCATTTTCAACGGTTTTTT
CGGTTTTTCCAGGATGGTCCGGCAGCGCCGCGCCTCGTGTGGCAAAGTGG
TGCACGGCAAAGAACCGGCAGCGGCAGGGGAGCTTCGGCGATGCTTCGCA
TGTGACCGCCCCGGTAGCCGCGACGGGTGCTCGACCAATTGGCAGCACGT
GGTGGACTCCGAATACTGGGCGGAGCTGGGCGAGTGGTCTGCAACGGTAG
GGGAAGGGTGGACTCATGAGCGCGACCTTGTAGGAGACCCTCTCAAGGCG
GGAGAGTGCATCTGTCGCCGCGCCGACTGTGTGGTTAATTTGTACCAAAG
GTACAAGGGGAGGCGCCAGAGGGAAGAGAAAGGAGCTTTGCACACCATGG
TGATTGGGCAGCGGTCGCCGATGGGCAGGTACCCGTCGACGGGCTCCCAG
GTATGACACCGCAGAAACACCACCTTTAGTGCGGCGGTGTAGGTGACTCA
TGCGTCCTGTCATATGCATCGATCTGGGCGAACTCTAGAACGTTGAAATT
GTAGGAAGACGCGACAACGTTGACCCCCGTGAAAACTTTCACCCCGTTCT
ATTTTTTCTGGTCAAGTTATCCTTTCTACGTTCCCACGTGACTACGTAGA
TATGTATGTGAGTTTCTGGGATCGCGACCGTCACCATGTGCTGTTGATGG
TGTAGTATTCTACCGAGTGGTGGACGTCCCATCTCTCAACCTTGCATCGG
TAGCCCTCGCCTTACTCCTTATTTCTCGAGTGGCATTGTTCCCTTTTCCT
TTGTTTTGGTTCTCACATAAGAAAATGGTAAGTAAGAGGATGCTGTGGTC
GTGCATCGTTGTCTGTCCTGCCCGTGTTGGTCGAAGAGTCTCGTGGCAGG
AGAGAGGGAGTCGACCCCACCCCCACAAGTCAACGGCAAAAGATATGTAG
AGCGCCCGCGAGGAGGGTGGAAACAAACATATTTATGCTGCCAGCATGCC
AGCATACTCCCTCTGCCAGGTAACACCTAACAAAATGAAGAAATATTAAG
TACGA
back to top

Coding sequence (CDS) from alignment at Scaffold_604:207091..209345-

>EsuBft329_6a-0001 ID=EsuBft329_6a-0001|Name=EsuBft329_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=204bp|location=Sequence derived from alignment at Scaffold_604:207091..209345- (Ectocarpus subulatus male Bft15b)
ATGAATCAAGGCAAAACCACTGATTTTTCTCTCACCGTACATTCCCGAGC
CGCCTTGCTGCTGGTCGGGTCTAGCACGCTTCATCTCCGCGCCGCCGCCC
CCGCCGCCACCGCCGCCACCCCCGCCCGGGTAGCCTCCCGCGCCCTGGTA
TGGAGCGTTGTCGTACGGCCTCTTGTGCATACCCCCGCCGCCGCTGTGGT
ATGA
back to top