EsuBft329_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft329_9a-0001
Unique NameEsuBft329_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_604contigScaffold_604:177668..178016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft329_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length27
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft329_9aEsuBft329_9aEctocarpus subulatus male Bft15bgeneScaffold_604 177668..178016 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_9a-0001-exonEsuBft329_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_604 177668..177932 +
EsuBft329_9a-0001-exonagat-exon-87647Ectocarpus subulatus male Bft15bexonScaffold_604 178003..178016 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_9a-0001-exonagat-five_prime_utr-8186Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_604 177668..177856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_9a-0001-cdsEsuBft329_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_604 177857..177932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_9a-0001EsuBft329_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_604 177857..178016 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft329_9a-0001 ID=EsuBft329_9a-0001|Name=EsuBft329_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=279bp|location=Sequence derived from alignment at Scaffold_604:177668..178016+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACACACGAGAGAGTCCCGAGTGGGCCACACGAGGGACACAAATACACATG
CAGCAGTGAGTTTATTTCACTCTCACGGCGGTGGCATCAAGTGCCTGTTG
GGGGCTTGCCTGTTGTGTGCTCTTACGCCGCGATTGGAGATGTGCGAACG
ACACGTCCCACGGACAGAACTACGAGAGAGAGAGCGGATATGGGCCTTCT
GGACGAAGACGACGGCGTGGACGCGGATGATGAGATGCACATGACATGGA
GGTGCGGATGCACATTCGTGGAGTTCTGA
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protein sequence of EsuBft329_9a-0001

>EsuBft329_9 ID=EsuBft329_9|Name=EsuBft329_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=29bp
MGLLDEDDGVDADDEMHMTWRCGCTFVEF
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mRNA from alignment at Scaffold_604:177668..178016+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft329_9a-0001 ID=EsuBft329_9a-0001|Name=EsuBft329_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=349bp|location=Sequence derived from alignment at Scaffold_604:177668..178016+ (Ectocarpus subulatus male Bft15b)
ACACACGAGAGAGTCCCGAGTGGGCCACACGAGGGACACAAATACACATG
CAGCAGTGAGTTTATTTCACTCTCACGGCGGTGGCATCAAGTGCCTGTTG
GGGGCTTGCCTGTTGTGTGCTCTTACGCCGCGATTGGAGATGTGCGAACG
ACACGTCCCACGGACAGAACTACGAGAGAGAGAGCGGATATGGGCCTTCT
GGACGAAGACGACGGCGTGGACGCGGATGATGAGATGCACATGACATGGA
GGTGCGGATGCACATGTAAGCGTCTGGGTATTCGCTACTACGCTACTGCT
GTGCAGCAGTCAGTTACCAGTCAGTTGGCAGTCAGTCGTGGAGTTCTGA
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Coding sequence (CDS) from alignment at Scaffold_604:177668..178016+

>EsuBft329_9a-0001 ID=EsuBft329_9a-0001|Name=EsuBft329_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=90bp|location=Sequence derived from alignment at Scaffold_604:177668..178016+ (Ectocarpus subulatus male Bft15b)
ATGGGCCTTCTGGACGAAGACGACGGCGTGGACGCGGATGATGAGATGCA
CATGACATGGAGGTGCGGATGCACATTCGTGGAGTTCTGA
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