EsuBft329_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft329_11a-0001
Unique NameEsuBft329_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_604contigScaffold_604:167084..171801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft329_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length177
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft329_11aEsuBft329_11aEctocarpus subulatus male Bft15bgeneScaffold_604 167084..171801 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_11a-0001-exonagat-exon-87652Ectocarpus subulatus male Bft15bexonScaffold_604 167084..167285 +
EsuBft329_11a-0001-exonagat-exon-87649Ectocarpus subulatus male Bft15bexonScaffold_604 169484..169683 +
EsuBft329_11a-0001-exonagat-exon-87654Ectocarpus subulatus male Bft15bexonScaffold_604 169858..170425 +
EsuBft329_11a-0001-exonagat-exon-87651Ectocarpus subulatus male Bft15bexonScaffold_604 170576..170760 +
EsuBft329_11a-0001-exonagat-exon-87650Ectocarpus subulatus male Bft15bexonScaffold_604 170918..171023 +
EsuBft329_11a-0001-exonEsuBft329_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_604 171139..171641 +
EsuBft329_11a-0001-exonagat-exon-87653Ectocarpus subulatus male Bft15bexonScaffold_604 171791..171801 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_11a-0001-exonagat-five_prime_utr-8176Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_604 167084..167285 +
EsuBft329_11a-0001-exonagat-five_prime_utr-8177Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_604 169484..169527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_11a-0001-cdsEsuBft329_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_604 169528..169683 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_11a-0001-exonagat-three_prime_utr-12893Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_604 170335..170425 +
EsuBft329_11a-0001-exonagat-three_prime_utr-12894Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_604 170576..170760 +
EsuBft329_11a-0001-exonagat-three_prime_utr-12895Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_604 170918..171023 +
EsuBft329_11a-0001-exonagat-three_prime_utr-12896Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_604 171139..171641 +
EsuBft329_11a-0001-exonagat-three_prime_utr-12897Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_604 171791..171801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_11a-0001EsuBft329_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_604 169528..170334 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft329_11a-0001 ID=EsuBft329_11a-0001|Name=EsuBft329_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1775bp|location=Sequence derived from alignment at Scaffold_604:167084..171801+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTCTCACACAGTCACATCTCACGCACACACGTCCTCGTCCCCTTCCCTG
ACAAACACCTCGCGACCACTGCTGCTGCAAGACACCTTCTCCTCCAAGAC
TCCGCGACACCAACTACCCACCACCTGCCTTCGCGAGCTTCCGATCGAGA
CGAACGAACACCACCACCACACACAGCGACGAGTTCGTACAAACAACCAG
AGGCTTCGTCCCAATCACAACGATCAACAACGACAACAACAGAGCCATGA
CTTCCGTCCACAAGCCCGACCTCTCCGGCCTGCCCGCCTTCAACGTCGCT
GGCGGTCGCCCCGACGAGCGCTTCGGTACCAGGGGCTCCTTCACCCGCGG
CGTGCACATCATGTCCGGTGGCCATGCTCGCGATGTACCGCTCGAGGCCG
AGGTCGACCACGGCAAGGTGCTCTTCGTGTCCGCCGTCCACAAGCCGGAT
CTCTCCGCCGAGGCCCGCACCAACGCCGTCCGCCCGACGGAGCGCCTCGG
CTCCCGGGGCCGCTTCACCGCGGGCGTCCGTCGCTGGGCCGGTGGCGAGC
CTCGTGACGTGCCGCTCCCGCGCGTGTGCGACCCGGGTACCGTCCTGTTC
GAGTCCGCCTCGGAACGTAGCAGGCCCTCCTTGTCCTTTTCGCGCGAGAC
CAACGTGTCCGGAGGCAGGCAGGACGAGCGCCACGGGCGGCTGGGATCGT
TCGAGCACGGGGTCGTCGAGGCTCGGGGAGGGCCGCTGCAGGTTCAGGCG
GCCTTCGCGCGCGATGTGGAGCAGCTGTGGCACGAGGGCGGGCAGAAGGA
GAACAAGTACCGCCGCTGCGGGCCCAGCCACTTCGTCGCCGGCGTGTCTA
TTCTGTCGGGCGGCATGCCGGTCTACTGAGAGTAGAGAATGACTGCTGTT
GCTACTGTAAGGAGAGTATGAGGCGCTTGTCATGCTGTCCGCCTCATGCG
TGGTTGGTCATTCACCAAAGGTTGCTCATTGTTGGCAGCGTGTTAGCGTG
TTTGGTCTTCCACCGGCACCAGCGCGAACTTACCGTTGATTTCTTTTTTG
AGAGAGGGGGCAATGTTGAGAAGGTTGCTATCCTTTCGGGTCGTTTTACA
TCGATGGGTGCCTGTGGTGTGCTACATGTTGAGAGCACCACGCAGCGGCG
GCGGGGACCAAGATGGTCGGCTTGAATAAACGTTGTTCATGACTTGTTCG
TGACGAGTGTTGGAGGAGTCGAACAAGTTAAGAAGTTCGTGGTGTTGTAG
TTGATAGAATAGGATGATTAGAAGTGATGACCTGTGTTGGACATGATGCT
ATGTGAAGTGGTTGTTGTCTCAAGGGGGGCGAAAGCGGTAGTTGTTCGTC
CGTGTACACCCTCCCCGCCCCATCGACCCCCGGCAAGGGATCCAGTACTG
AATTGGGGTACAAGAGATTCTCGGCTAGTGTCATTGTCGCCGCTAAGGTT
TCGTGTGGTATTCGTCTCGGTGTCTGTTTTTTCAATAATGGATGGGGGTA
CGGTGGTGGGTGTTGACGTGACGTGCATGGCGTTACTTGAAGGATATTTT
TTCATTCCGATCGACATATTAGTCCGAGAACGATGAATATAGAAAGGTGT
GTACTAGTAGACTCTACTGCTGCTGTAGTTTAGTTGTGCCTCTTTGCTGT
TGTTTTGCGAGGGGGTGCTCTAGCGGGGGGGACGCCATGACGCGCACATG
ATTAAAGGAGAGCGGGAGATACGTAGAAATATCCAGGAATTGAATGGGTT
TGGCGTGAGCGGGTAGAAAATCGAA
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protein sequence of EsuBft329_11a-0001

>EsuBft329_11 ID=EsuBft329_11|Name=EsuBft329_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=210bp
MTSVHKPDLSGLPAFNVAGGRPDERFGTRGSFTRGVHIMSGGHARDVPLE
AEVDHGKVLFVSAVHKPDLSAEARTNAVRPTERLGSRGRFTAGVRRWAGG
EPRDVPLPRVCDPGTVLFESASERSRPSLSFSRETNVSGGRQDERHGRLG
SFEHGVVEARGGPLQVQAAFARDVEQLWHEGGQKENKYRRCGPSHFVAGV
SILSGGMPVY
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mRNA from alignment at Scaffold_604:167084..171801+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft329_11a-0001 ID=EsuBft329_11a-0001|Name=EsuBft329_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4718bp|location=Sequence derived from alignment at Scaffold_604:167084..171801+ (Ectocarpus subulatus male Bft15b)
TCTCTCACACAGTCACATCTCACGCACACACGTCCTCGTCCCCTTCCCTG
ACAAACACCTCGCGACCACTGCTGCTGCAAGACACCTTCTCCTCCAAGAC
TCCGCGACACCAACTACCCACCACCTGCCTTCGCGAGCTTCCGATCGAGA
CGAACGAACACCACCACCACACACAGCGACGAGTTCGTACAAACAACCAG
AGGTGAGAGCGGTTGTTGTGAAGGACCTTCTCGTAGCCTCTCTCCGTTTG
CCGCCGTGGCACAGTAATTGCGGCGACGAGCGTGGCGAACCAGGGGCCGA
CATCACGGCAGTATACTTATCAATACCGCAATGTACGGTAGCACGGCCTG
CCCGCTCCGATTGTTTCAAGCGGGCTAAAGATATGATGGGGGGTGACATC
CGACGGCGGTTGTTCGACTCTCCGCTCCGCGGTAGAGAACATCGTGTGTC
ACATCTATCACCCATTTTCTTGTGGTCGAGGAGAAACAGGCGAGCTGCCG
TGCTCTATCTCCCACACAGGACCCGCCCGATCCAGTGTTCGTGGGCGCTC
TTAAGATCGAGTATGTGTAATGTACAGAATGATCAGACCACGAGAGCTCG
GTGCAATTTACAGCGTCGATCAGGTAGTAGGTGACTCAGTGGTCTGTCTT
GAACATTCAACCATTAAACCTCCAATCCGGCTCTTTTTTGTTCTCGAAGA
GTCCCAGGCGGAGAAACACAGATACATCTGTGATGTTCCCGACTCATGCT
TGGCCCACCACACTGCTATACCGTATAGAGGCGCCGCGCTCCCAGATTTG
CCATGAACAAAAGAGTAAAGGGCATAACGCGGCGGCCGTGCTTGTTGTGT
GCTCCCTATTTGCTCCTCGTCGTGTAGTCTAGCTAAATACATCACGACAT
TATTTTCTGTTGTACTTTCGTTTCCGGCCGTGTGGCGATGGTATAGACTT
ACTTCGTAATATTTAGGTAGTCCGGCCCTGTCTCTCATGTTTTTCCCTCA
CCTAGTTAGCCGTCGATATGGGATACGGTGAAAAGCGAAAAGATGTCACC
GGGTGCGGTCGTTTTCTTATACCACGGTACATACTTCTAGTACATCCGTT
TTTTCCTCTTTATGTTTGGACGCCGATGGTGTCATCTCTCCGACACCGGT
CGGTGCGGGAATGCAATTCGAAAACACTTAGATTCGCTTTTCCAAGGCAC
ACCGGTGCGATTTCTCCGACCGGTGCGATGCGCAACGAAATACACACAGC
GGGCCTGCTGGTGCTCGGCGGGTGTTGTATGCACGCACCATCTTCCCGAC
CCGTGCCATCTCTCCGTCTCCTCTCAGTACCAGTACTACGGCGTATCTAT
CTACAAGCAGATGTGCGCGGAGTAGGCACCGTTGTTGCTGGCCGTGAGCA
CACCGGCAAACGGCAACGTAGGCTGGAACCTACGACGTAGCGTTTTACCA
CGCAGTGAGTGGTCATGGCTTGAATGCGAGTTCGACAACGGCGTGCCAAG
GGCAACAAACGAATGGTTGTGGTTTTATCTGGAGTACACAGTACTGGTAC
ATACGGCAGCCGGTTCTCTCCCGCATCCGTTTCGGTGTTCCTCTACGCGC
AGCAGCTCATTTGAAATTAATGTGTTGCTGTGGGTGAAGGGAGCGGCTTG
TATGTGGTGTGCGTGGCTAACTGAGTGTACGGTTGGCAACTTCCATACGA
AGCAACAACAACAAATGACAATCTGCGTGAACCGCGACCGATTGTACATA
CATACATGTAGAAGTGGCGCTCCGATGACACCGTCCGCACACTTGCAAAA
GGTGATCCCACATGTACCTCGTTTCAGCAGCTCAAGAAGAGCTCAATCTT
GGGTTTGGGGGTCGGCAAAATCGCACACGGTGCGATCGGTGCGGAATCGA
AATATATCATGCCGTTCTTGATTTTCTCTGCGAACTCTGGTGCCATCTCC
ACGGTTTGAGCCATCTCTCCGCCTTCTACGGTAGTTCCACCACACCATAC
CATGCATGCTCAGCTCCGCACTCCTTGAGGAAGAAGTCACACTGCCTACT
ACTGTAGTGTTGTTGCACCAGCTTTGAATTGTGATCTTCCTCTAGCCCCC
TTGTGCTTACATTGTGTCAAGTATTTCCAACGTTTGCACGGCAATTGTTC
TGAATATGGACACAATAGTGCGCACGCTCACTTACCCTCCCGTCTGGCGT
TCGTCGTTCCGTCATCACAACTGAAAATTGCGTGAACGTTTTACAGCGGG
AACAAAATACAGTGTAGACTATGCGATTCTCGACGTCACGTCGCACTATG
CCCATCAACCCCAAACAATCTATGCGAGCCGGTATCTCATCATTTTGTTG
TCATTCCCCCTGCCCACGATGTCTCCGCCCGCTGCCCCGCCAATATTCAG
GCTTCGTCCCAATCACAACGATCAACAACGACAACAACAGAGCCATGACT
TCCGTCCACAAGCCCGACCTCTCCGGCCTGCCCGCCTTCAACGTCGCTGG
CGGTCGCCCCGACGAGCGCTTCGGTACCAGGGGCTCCTTCACCCGCGGCG
TGCACATCATGTCCGGTGGCCATGCTCGCGATGTACCGCTCGAGGCCGAG
GTCGACCACGGGAAGGTGCTCTTCGTGTCCGCCATCCACAAGCCGGACCT
CTCCGCCGAGGCCCGCACCAACGCCGTCCGACCCATGGAGCGCCTTGGAG
CCCGCGGCCGCTTCACGCCGGGGGGGCGTCGCTGGGCCGGTGGCAAGCCT
CGCGACGTACCGCTCGAGGCCGAGGTCGACCACGGCAAGGTGCTCTTCGT
GTCCGCCGTCCACAAGCCGGATCTCTCCGCCGAGGCCCGCACCAACGCCG
TCCGCCCGACGGAGCGCCTCGGCTCCCGGGGCCGCTTCACCGCGGGCGTC
CGTCGCTGGGCCGGTGGCGAGCCTCGTGACGTGCCGCTCCCGCGCGTGTG
CGACCCGGGTACCGTCCTGTTCGAGTCCGCCTCGGAACGTAGCAGGCCCT
CCTTGTCCTTTTCGCGCGAGACCAACGTGTCCGGAGGCAGGCAGGACGAG
CGCCACGGGCGGCTGGGATCGTTCGAGCACGGGGTCGTCGAGGCTCGGGG
AGGGCCGCTGCAGGTTCAGGCGGCCTTCGCGCGCGATGTGGAGCAGCTGT
GGCACGAGGGCGGGCAGAAGGAGAACAAGTACCGCCGCTGCGGGCCCAGC
CACTTCGTCGCCGGCGTGTCTATTCTGTCGGGCGGCATGCCGGTCTACTG
AGAGTAGAGAATGACTGCTGTTGCTACTGTAAGGAGAGTATGAGGCGCTT
GTCATGCTGTCCGCCTCATGCGTGGTTGGTCATTCACCAAAGGTTGCTCA
TTGTTGGCAGCGTGTTAGNCTATTCTGTCGGGCGGCATGCCGGTCTACTG
AGAGTAGAGAATGACTGCTGTAGCTACTGTAAGGAGAGTATGAGGCGCTT
GTCATGCTGTCGACCTCATGCGTGGTTGGTCATTCACCAAAGGTTGCTCA
TTGTTGGCAGCGTGTTAGCGTGTTTGGTCTTCCACCGGCACCAGCGCGAA
CTTACCGTTGATTTCTTTTTTGAGAGAGGGGGCAATGTTGAGAAGGTTGC
TATCCTTTCGGGTCGTTTTACATCGATGGGTGCCTGTGGTGTGCTACATG
TTGAGAGCACCACGCAGCGGCGGCGGGGTTGTGGTTCCGTTCGGCTTGCC
TCGTACCGCCGGGTAGGTGCAGAGGTGCAGAGTAGATGATTTGTGTATCA
ATGCATATGCTCGTGCAGCAAATTGGTATTTTCAAAGCACGGCAGCACTG
ACTGTTCGTCGTCGCTCGGGGTCATACGTTCCAGGACCAAGATGGTCGGC
TTGAATAAACGTTGTTCATGACTTGTTCGTGACGAGTGTTGGAGGAGTCG
AACAAGTTAAGAAGTTCGTGGTGTTGTAGTTGATAGAATAGTTGATAGAA
ATAGTACCAGTAGGGGATACGAGAGCACTGTTGTGGATGCAGTGCTTCAC
ATCCATCATCCATACGATGAACAAACTGCTTTGGACTAGTGTGTTGTGTG
GGAAGGGATGATTAGAAGTGATGACCTGTGTTGGACATGATGCTATGTGA
AGTGGTTGTTGTCTCAAGGGGGGCGAAAGCGGTAGTTGTTCGTCCGTGTA
CACCCTCCCCGCCCCATCGACCCCCGGCAAGGGATCCAGTACTGAATTGG
GGTACAAGAGATTCTCGGCTAGTGTCATTGTCGCCGCTAAGGTTTCGTGT
GGTATTCGTCTCGGTGTCTGTTTTTTCAATAATGGATGGGGGTACGGTGG
TGGGTGTTGACGTGACGTGCATGGCGTTACTTGAAGGATATTTTTTCATT
CCGATCGACATATTAGTCCGAGAACGATGAATATAGAAAGGTGTGTACTA
GTAGACTCTACTGCTGCTGTAGTTTAGTTGTGCCTCTTTGCTGTTGTTTT
GCGAGGGGGTGCTCTAGCGGGGGGGACGCCATGACGCGCACATGATTAAA
GGAGAGCGGGAGATACGTAGAAATATCCAGGAATTGAATGGGTTTGGCGT
GAGCGGGTGTTTGGGCGTGCATACGGCGGAGGACGTCGAGTTCAACTTCG
CCGGGTAAGTTCTTCTTTGCGAAACGCAAGAATATGAACTTTCTCGCCTT
CTTTGAGGCACGCACACAACAAATATTCCAGCGGGAACTTTCTCCTAGTA
CTTCCAGAGAAAATCGAA
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Coding sequence (CDS) from alignment at Scaffold_604:167084..171801+

>EsuBft329_11a-0001 ID=EsuBft329_11a-0001|Name=EsuBft329_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=633bp|location=Sequence derived from alignment at Scaffold_604:167084..171801+ (Ectocarpus subulatus male Bft15b)
ATGACTTCCGTCCACAAGCCCGACCTCTCCGGCCTGCCCGCCTTCAACGT
CGCTGGCGGTCGCCCCGACGAGCGCTTCGGTACCAGGGGCTCCTTCACCC
GCGGCGTGCACATCATGTCCGGTGGCCATGCTCGCGATGTACCGCTCGAG
GCCGAGGTCGACCACGGCAAGGTGCTCTTCGTGTCCGCCGTCCACAAGCC
GGATCTCTCCGCCGAGGCCCGCACCAACGCCGTCCGCCCGACGGAGCGCC
TCGGCTCCCGGGGCCGCTTCACCGCGGGCGTCCGTCGCTGGGCCGGTGGC
GAGCCTCGTGACGTGCCGCTCCCGCGCGTGTGCGACCCGGGTACCGTCCT
GTTCGAGTCCGCCTCGGAACGTAGCAGGCCCTCCTTGTCCTTTTCGCGCG
AGACCAACGTGTCCGGAGGCAGGCAGGACGAGCGCCACGGGCGGCTGGGA
TCGTTCGAGCACGGGGTCGTCGAGGCTCGGGGAGGGCCGCTGCAGGTTCA
GGCGGCCTTCGCGCGCGATGTGGAGCAGCTGTGGCACGAGGGCGGGCAGA
AGGAGAACAAGTACCGCCGCTGCGGGCCCAGCCACTTCGTCGCCGGCGTG
TCTATTCTGTCGGGCGGCATGCCGGTCTACTGA
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