EsuBft329_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft329_14a-0001
Unique Name	EsuBft329_14a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_604	contig	Scaffold_604:138616..141546 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft329_14
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	TMhelix
Protein domains	TRANSMEMBRANE
Protein domains	CYTOPLASMIC_DOMAIN
Owner	apollo_admin@sb-roscoff.fr
Nb exon	6
Length	172
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft329_14a	EsuBft329_14a	Ectocarpus subulatus male Bft15b	gene	Scaffold_604 138616..141546 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft329_14a-0001	EsuBft329_14	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_604 138616..141546 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft329_14a-0001-exon	agat-exon-87661	Ectocarpus subulatus male Bft15b	exon	Scaffold_604 138616..138620 +
EsuBft329_14a-0001-exon	agat-exon-87659	Ectocarpus subulatus male Bft15b	exon	Scaffold_604 138802..139184 +
EsuBft329_14a-0001-exon	agat-exon-87657	Ectocarpus subulatus male Bft15b	exon	Scaffold_604 139290..139794 +
EsuBft329_14a-0001-exon	EsuBft329_14a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_604 140093..140345 +
EsuBft329_14a-0001-exon	agat-exon-87660	Ectocarpus subulatus male Bft15b	exon	Scaffold_604 140928..141497 +
EsuBft329_14a-0001-exon	agat-exon-87658	Ectocarpus subulatus male Bft15b	exon	Scaffold_604 141541..141546 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft329_14a-0001-cds	EsuBft329_14a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_604 138616..138620 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_604:138616..141546+
coding sequence from alignment at Scaffold_604:138616..141546+

spliced messenger RNA

>EsuBft329_14a-0001 ID=EsuBft329_14a-0001|Name=EsuBft329_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1722bp|location=Sequence derived from alignment at Scaffold_604:138616..141546+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGTGACCTCCCAGTTCTCTCCGGGGAGGACACGGCGAAGTGCAC
GGTGCTGGAGGCCGCAGGTGACGGTAATTGCTCACTTCACAGTATCTACA
GGCTGCTGCACCCCGAGCGAGATAGCGTCGGGGGTGCAACACCAGAGGAG
ATAAGAGAGACTCGCCAAGAAATGGTGGATGAAATGCCAGCAGTTGCTTT
CTCTGAGGACTACGGTCAGTTACTGGTCAACACGGTGTCCGAGGAAGAAA
TGCTAAGATTGTCCAGTCTCAACTTCGACAAGGGTTTCTACCGAAAGTGC
ACCTCCTCATCCGGTCGAGCTACAAGACGCAAACCAATGATGACTGTGCG
AGAGGTGGTAGAGGACATCCACAAAAAACTGGGGTACGGTGAGACCACGG
GCTGTTTCGTTGGCAATCTTTTCGGGAAGGATTTTCTGCACCTGGTGTAC
AATGACTGCGGGGGCTACGGTGCAGATAGTTTTGCTGAGGGTGCGGTTAC
AGTGCGCAACCCGAGCAGCAGCAACGTGGCGGAAACAAAGCTGAACCACT
TCAGCGCTATCGTGATCCCACAAGAACTCGTGCCGTGGGCATTGCCGTAC
ATGCTCGCACGGGGTTCCTCCGGCGAGTCTGGTATTGGGCATAGGAAGGC
TGCAGACGATTATTGCCCGTGTGCAACCACATCGGACAAGCGATCGACGA
AACACAGGGGCTCTCCCATTGCTCTCGACACTGATGATGATGACGAAACC
GAAACAAACAGTAGCGTGCGATCTCCCCGTTCTGCTGGAGGTGCCCCGTC
AGTCACAACCGCACCCACCGGCGTATCAAAGCCGGAGACGCCGCCGGGGA
AAGCGGCGATCAAGCCCGCCACACTTCCTTCTGCCAGCAGCATGGGTGAA
AACGGCGGTGATAACGAAACGGAATACGTACAGGACCCTGAGGGGGACGA
GGACATGAGTGACGGGGGTAGCGACGGCGAGTTTCCGGGGGGCTTGGCAA
ACTATGACGAGCCGTCCGTGACTATCAAAAGCCCTCAGCAGATCAACGCT
ATGGTGGACAAGATACCGGAGGGCTGGGGAAAGCCGGCCCTGAGGTTCGT
CTTCGAGTTGGTGCAACACACACATGACTTCCGAAACGGCCGCAAGAAAA
AGAACATGACCAAGTCGAAGGTTCACAAGGATGCTCCTGAGGGGTGTGGT
GAGGACGAGAAGGGCGAGGAGGAGCTAGATACCGCAGACGAGCACGTCTG
GACAACACGCGGCATGCAAGATGCAGATCGTACGGCTGGATACGACGGCG
GCCGATGCAGCGGTATAAGGATGCCCGTGGTGGAGATGGCGGTGGAGACT
GCGACAGCAGTAGGAGCAGCACCGTCCGGAATAGGGGTGAGGCAGAGGGT
GCCGCAGATAACGACAGCAGTCGTACCGTACGTAGAGGGGGGCGGTGCTG
CGGGCTCATATGGGGGTGATGGGTTTGATTTTGACGGTGAAGGCTCCTAC
CGAGGAGACGGGCACGGGTACTACGATTGCCACCGCAATAAAGCGGGAGA
GGGACACGATTTGAAGTTGAAACCGTCGAAGACAACATTGGATGCGTTGC
CGATGTTTGACCCCGAGAAGTTGGGCAGGTTCTCGGCGGATGGGCTAGAC
GAGCTGGCGTTCACGTTCTTCTGCATCATGTTCCCGGCGGCGTTGATCTC
ACACCTGGTCCTGAAGGGGTAG

protein sequence of EsuBft329_14a-0001

>EsuBft329_14 ID=EsuBft329_14|Name=EsuBft329_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=573bp
MSGDLPVLSGEDTAKCTVLEAAGDGNCSLHSIYRLLHPERDSVGGATPEE
IRETRQEMVDEMPAVAFSEDYGQLLVNTVSEEEMLRLSSLNFDKGFYRKC
TSSSGRATRRKPMMTVREVVEDIHKKLGYGETTGCFVGNLFGKDFLHLVY
NDCGGYGADSFAEGAVTVRNPSSSNVAETKLNHFSAIVIPQELVPWALPY
MLARGSSGESGIGHRKAADDYCPCATTSDKRSTKHRGSPIALDTDDDDET
ETNSSVRSPRSAGGAPSVTTAPTGVSKPETPPGKAAIKPATLPSASSMGE
NGGDNETEYVQDPEGDEDMSDGGSDGEFPGGLANYDEPSVTIKSPQQINA
MVDKIPEGWGKPALRFVFELVQHTHDFRNGRKKKNMTKSKVHKDAPEGCG
EDEKGEEELDTADEHVWTTRGMQDADRTAGYDGGRCSGIRMPVVEMAVET
ATAVGAAPSGIGVRQRVPQITTAVVPYVEGGGAAGSYGGDGFDFDGEGSY
RGDGHGYYDCHRNKAGEGHDLKLKPSKTTLDALPMFDPEKLGRFSADGLD
ELAFTFFCIMFPAALISHLVLKG

mRNA from alignment at Scaffold_604:138616..141546+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft329_14a-0001 ID=EsuBft329_14a-0001|Name=EsuBft329_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2931bp|location=Sequence derived from alignment at Scaffold_604:138616..141546+ (Ectocarpus subulatus male Bft15b)
ATGAGGTTCATGGCGCGATTTCGTGCTATGCGAGACTGTGAGGTCAGCCA
TGAGCATCCCACTTTCATCGCTGTGCCGCGTACCGCACGCGGCGCAATAC
AGCACAAGCACACACACCCTTCGCCACTCGTAGTCTCGATGCGCAAAAGG
CCGACAACTTCTGCATGCAGCCTCGAAGCGTTATAGCGGTGACCTCCCAG
TTCTCTCCGGGGAGGACACGGCGAAGTGCACGGTGCTGGAGGCCGCAGGT
GACGGTAATTGCTCACTTCACAGTATCTACAGGCTGCTGCACCCCGAGCG
AGATAGCGTCGGGGGTGCAACACCAGAGGAGATAAGAGAGACTCGCCAAG
AAATGGTGGATGAAATGCCAGCAGTTGCTTTCTCTGAGGACTACGGTCAG
TTACTGGTCAACACGGTGTCCGAGGAAGAAATGCTAAGATTGTCCAGTCT
CAACTTCGACAAGGGTTTCTACCGAAAGTGCACCTCCTCATCCGGTCGAG
CTACAAGACGCAAACCAATGATGACTGTGCGAGAGGTGGTAGAGGACATC
CACAAAAAACTGGGGTACGGTTAATTGGCGGTATGTCAGCTGGCGTTGGT
AGCTGAGGTGAAGGAGTGGAATATCGTGGTCTAGGAATCAAAAGCTGGAG
ATGGGCTTCGAATCGTGGAAATAGGTGAGACCACGGGCTGTTTCGTTGGC
AATCTTTTCGGGAAGGATTTTCTGCACCTGGTGTACAATGACTGCGGGGG
CTACGGTGCAGATAGTTTTGCTGAGGGTGCGGTTACAGTGCGCAACCCGA
GCAGCAGCAACGTGGCGGAAACAAAGCTGAACCACTTCAGCGCTATCGTG
ATCCCACAAGAACTCGTGCCGTGGGCATTGCCGTACATGCTCGCACGGGG
TTCCTCCGGCGAGTCTGGTATTGGGCATAGGAAGGCTGCAGACGATTATT
GCCCGTGTGCAACCACATCGGACAAGCGATCGACGAAACACAGGGGCTCT
CCCATTGCTCTCGACACTGATGATGATGACGAAACCGAAACAAACAGTAG
CGTGCGATCTCCCCGTTCTGCTGGAGGTGCCCCGTCAGTCACAACCGCAC
CCACCGGCGTATCAAAGCCGGAGACGCCGCCGGGGAAAGCGGCGATCAAG
CCCGCCACACTTCCTTCTGCCAGCAGCATGTATGTCGGCGACGACCGGGG
CGAATGAGACGCCGACGCCGGCGGAAACGCCAACCAAGCTCGCCAGCAGC
AAAGCGCAAAAGCTGTCTTTGGATGCGGCGAAGTCGGAGACGCTAGAGGG
AGGTGCTGCCGCGTAGATCCGTCGAAAAAGAAGCATTTAAGCGCCGCGAG
ACTTGCCATGCTTTATTCGCCAGCGAAAAAAGCCAAGGGCAGCGCTGTGG
GGCCGAGGCGAGATCTCCCTGTGATATACTCTGTAGCACGCACAGTAAGA
AGGGTGGCCAAAACGTACTTGCGGTAGGGGTGAAAACGGCGGTGATAACG
AAACGGAATACGTACAGGACCCTGAGGGGGACGAGGACATGAGTGACGGG
GGTAGCGACGGCGAGTTTCCGGGGGGCTTGGCAAACTATGACGAGCCGTC
CGTGACTATCAAAAGCCCTCAGCAGATCAACGCTATGGTGGACAAGATAC
CGGAGGGCTGGGGAAAGCCGGCCCTGAGGTTCGTCTTCGAGTTGGTGCAA
CACACACATGACTTCCGAAACGGCCGCAAGGTAAGGATGTGTGCATTGAT
ATTTCTAGGAGTTTGTTTTTCGGTAAACGCTCGCCGCTTTCCGGTGTGTA
TGTGTTGTCGTTTGGGACCACTACAGCAGCACGAAAGCTACCGAGGTACG
ACTTCGTTCGGCGATATCTAAAGTTTGATGTACACGAAATATTGACATCA
ACTACGCACACCACCGCGCGTCGGGGGTATTATTTTTTGTGTCCCTCGCA
CGAGATTCGATTTTGATCGTGCATCACTTTGTGTATGCTTGTTGTTGCTT
CTCCCACTCTGCGAACGTGTATTGCTGAAAATCATCTTGTTTCGTAGCTG
TTAGCAGCGTGTGTGATGCTGCTGTGGTTGTGCGAAATGCTTCCTCCGTC
TCTCCGTCTCCCCCGGCCCCCCCGCGCCCATCTTCCTCGTGGTGTGTCCA
CCTCGTCCTTGCACTCCCTTACCATCGTAAGCTAAACGCCAGTCCACAAT
CTTTCTATCACGTGATGCGATGGCAACAATGGCCCCTGACCGCTTTAGCC
ACCCCCTCCCCTCCCCTGTTCCCTGCATTAACCGGCCGTTTCCATGCCAT
CGTCCACAACAGAAAAAGAACATGACCAAGTCGAAGGTTCACAAGGATGC
TCCTGAGGGGTGTGGTGAGGACGAGAAGGGCGAGGAGGAGCTAGATACCG
CAGACGAGCACGTCTGGACAACACGCGGCATGCAAGATGCAGATCGTACG
GCTGGATACGACGGCGGCCGATGCAGCGGTATAAGGATGCCCGTGGTGGA
GATGGCGGTGGAGACTGCGACAGCAGTAGGAGCAGCACCGTCCGGAATAG
GGGTGAGGCAGAGGGTGCCGCAGATAACGACAGCAGTCGTACCGTACGTA
GAGGGGGGCGGTGCTGCGGGCTCATATGGGGGTGATGGGTTTGATTTTGA
CGGTGAAGGCTCCTACCGAGGAGACGGGCACGGGTACTACGATTGCCACC
GCAATAAAGCGGGAGAGGGACACGATTTGAAGTTGAAACCGTCGAAGACA
ACATTGGATGCGTTGCCGATGTTTGACCCCGAGAAGTTGGGCAGGTTCTC
GGCGGATGGGCTAGACGAGCTGGCGTTCACGTTCTTCTGCATCATGTTCC
CGGCGGCGTTGATCTCACACCTGGTCCTGAAGGTTAGTGCAAGCGCTCGT
TCCTGTTGGGTCGCTGATCATACAGGGGTAG

Coding sequence (CDS) from alignment at Scaffold_604:138616..141546+

>EsuBft329_14a-0001 ID=EsuBft329_14a-0001|Name=EsuBft329_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1722bp|location=Sequence derived from alignment at Scaffold_604:138616..141546+ (Ectocarpus subulatus male Bft15b)
ATGAGCGGTGACCTCCCAGTTCTCTCCGGGGAGGACACGGCGAAGTGCAC
GGTGCTGGAGGCCGCAGGTGACGGTAATTGCTCACTTCACAGTATCTACA
GGCTGCTGCACCCCGAGCGAGATAGCGTCGGGGGTGCAACACCAGAGGAG
ATAAGAGAGACTCGCCAAGAAATGGTGGATGAAATGCCAGCAGTTGCTTT
CTCTGAGGACTACGGTCAGTTACTGGTCAACACGGTGTCCGAGGAAGAAA
TGCTAAGATTGTCCAGTCTCAACTTCGACAAGGGTTTCTACCGAAAGTGC
ACCTCCTCATCCGGTCGAGCTACAAGACGCAAACCAATGATGACTGTGCG
AGAGGTGGTAGAGGACATCCACAAAAAACTGGGGTACGGTGAGACCACGG
GCTGTTTCGTTGGCAATCTTTTCGGGAAGGATTTTCTGCACCTGGTGTAC
AATGACTGCGGGGGCTACGGTGCAGATAGTTTTGCTGAGGGTGCGGTTAC
AGTGCGCAACCCGAGCAGCAGCAACGTGGCGGAAACAAAGCTGAACCACT
TCAGCGCTATCGTGATCCCACAAGAACTCGTGCCGTGGGCATTGCCGTAC
ATGCTCGCACGGGGTTCCTCCGGCGAGTCTGGTATTGGGCATAGGAAGGC
TGCAGACGATTATTGCCCGTGTGCAACCACATCGGACAAGCGATCGACGA
AACACAGGGGCTCTCCCATTGCTCTCGACACTGATGATGATGACGAAACC
GAAACAAACAGTAGCGTGCGATCTCCCCGTTCTGCTGGAGGTGCCCCGTC
AGTCACAACCGCACCCACCGGCGTATCAAAGCCGGAGACGCCGCCGGGGA
AAGCGGCGATCAAGCCCGCCACACTTCCTTCTGCCAGCAGCATGGGTGAA
AACGGCGGTGATAACGAAACGGAATACGTACAGGACCCTGAGGGGGACGA
GGACATGAGTGACGGGGGTAGCGACGGCGAGTTTCCGGGGGGCTTGGCAA
ACTATGACGAGCCGTCCGTGACTATCAAAAGCCCTCAGCAGATCAACGCT
ATGGTGGACAAGATACCGGAGGGCTGGGGAAAGCCGGCCCTGAGGTTCGT
CTTCGAGTTGGTGCAACACACACATGACTTCCGAAACGGCCGCAAGAAAA
AGAACATGACCAAGTCGAAGGTTCACAAGGATGCTCCTGAGGGGTGTGGT
GAGGACGAGAAGGGCGAGGAGGAGCTAGATACCGCAGACGAGCACGTCTG
GACAACACGCGGCATGCAAGATGCAGATCGTACGGCTGGATACGACGGCG
GCCGATGCAGCGGTATAAGGATGCCCGTGGTGGAGATGGCGGTGGAGACT
GCGACAGCAGTAGGAGCAGCACCGTCCGGAATAGGGGTGAGGCAGAGGGT
GCCGCAGATAACGACAGCAGTCGTACCGTACGTAGAGGGGGGCGGTGCTG
CGGGCTCATATGGGGGTGATGGGTTTGATTTTGACGGTGAAGGCTCCTAC
CGAGGAGACGGGCACGGGTACTACGATTGCCACCGCAATAAAGCGGGAGA
GGGACACGATTTGAAGTTGAAACCGTCGAAGACAACATTGGATGCGTTGC
CGATGTTTGACCCCGAGAAGTTGGGCAGGTTCTCGGCGGATGGGCTAGAC
GAGCTGGCGTTCACGTTCTTCTGCATCATGTTCCCGGCGGCGTTGATCTC
ACACCTGGTCCTGAAGGGGTAG