EsuBft329_21a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft329_21a-0001
Unique NameEsuBft329_21a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_604contigScaffold_604:28076..30778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FZI9
ProteomeIdEsuBft329_21
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length29
Hectar predicted targeting categoryother localisation
Evalue9.45e-40
EggNOG OGsKOG1166@1|root,KOG1166@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K02178
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04914,map04110,map04111,map04113,map04114,map04914
EC2.7.11.1
Descriptionmeiotic sister chromatid cohesion, centromeric
COG categoryS
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft329_21aEsuBft329_21aEctocarpus subulatus male Bft15bgeneScaffold_604 28076..30778 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_21a-0001EsuBft329_21Ectocarpus subulatus male Bft15bpolypeptideScaffold_604 28076..30733 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_21a-0001-exonagat-exon-87695Ectocarpus subulatus male Bft15bexonScaffold_604 28076..28084 -
EsuBft329_21a-0001-exonagat-exon-87697Ectocarpus subulatus male Bft15bexonScaffold_604 28266..28376 -
EsuBft329_21a-0001-exonEsuBft329_21a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_604 29497..29611 -
EsuBft329_21a-0001-exonagat-exon-87696Ectocarpus subulatus male Bft15bexonScaffold_604 30723..30778 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_21a-0001-cdsEsuBft329_21a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_604 28076..28084 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_21a-0001-exonagat-five_prime_utr-8181Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_604 30734..30778 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft329_21a-0001 ID=EsuBft329_21a-0001|Name=EsuBft329_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=291bp|location=Sequence derived from alignment at Scaffold_604:28076..30778- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGGGTGGGCTGGGCACTGTACGCAGAAAATGCGGGGAACTACCCCATGGC
TGAGAAGCTGTACGTTAAGGGCATCGAGCACCGTAGGGCAGAGCCGTTGG
ACGTGCTCAAGAAGAGACAGGCTCACTTCATGCGCCGCATGCGTCGGCAC
TGGATTAACAGTCAGATCGAGGAGGGCACAGCGGAGGACCAAGCGAGGGA
GCTTCCGGGGGACGAGGAGGCTCGCAGGGGTATCCTACGTTCCCTCTCGG
TTACGGCTATAGAGCGCAACCGGCGCGAACAGGGCGGTTGA
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protein sequence of EsuBft329_21a-0001

>EsuBft329_21 ID=EsuBft329_21|Name=EsuBft329_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=81bp
MAEKLYVKGIEHRRAEPLDVLKKRQAHFMRRMRRHWINSQIEEGTAEDQA
RELPGDEEARRGILRSLSVTAIERNRREQGG
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mRNA from alignment at Scaffold_604:28076..30778-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft329_21a-0001 ID=EsuBft329_21a-0001|Name=EsuBft329_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2703bp|location=Sequence derived from alignment at Scaffold_604:28076..30778- (Ectocarpus subulatus male Bft15b)
TGGGTGGGCTGGGCACTGTACGCAGAAAATGCGGGGAACTACCCCATGGC
TGAGAAGTGAGTTTGGAACGCGTCTTGTCCCGCAGAGCCCCGACGAACGC
TAAAAGTGCTCGTTTGTACTGTATCCTCCTCGACTCAGAGAGAAAACAAG
TTTGTGGGGATTTCAGTGGTGATCCTGATTCATTACGAAATTTACCGCGA
AGTGAAGTATTTTCCTGGGTGACTTTGGCCCTGTGCGCGGAAAACGCGGG
GAATTATCCCATGGCTGAGAAGTGAGTTTGGGATGCGTCGTGTCCCGCAG
AGACCCGACGAAAGCTACAAATGCTCGTTGGTATCCTGCTCAGCCGACTA
AATAAGCTTGTGGGGATTTCAGGAGTCGTTCTGGTTCCTAACGAAATTTT
CCGTGAAGTAAAGTTTTGTTCCGGGTGGGCTGGACCCGTACGCGGAAAAT
GGGGGAAAACATCCCATGGCCGAGAAGGGAGTGTTGCGGAAGCCCGCCTC
GTACTTCTTTACATGCGGAAAAGACACTACGGTGGTGGTGGTCCAGGAAT
GCTGCCGGTAGAGCCGCGTGGTGCAGGAGGAATATTCAAGTTGTTTCATA
CTCTGAACAATGCCGGTTGTCCCCCGCTTCAGTGCCGGTGATATCGGCCG
GATCGCACCGGCATGTATGTCGGGACCACTCCTGTCCTCTGCATCCCAAC
AAAAATATCAGGATGGAAATAACAAACCCATGGTCCCGGCGCCCCAGCTT
TAGCAACTACTAGAGTGATATAAGTAGGTTTTACCGTAGAATTCCTACGC
GGAGCACCTCCTGTTCTTGTGGTGGCATTATATGTCGGGACCACTCCTGT
CCTCTGCATCCCAACAAAAATATCAGGATGGAAATAACAAACCCATGGTC
CCGGCGCCCCAGCTTTAGCAACTACTAGAGTGATAAAAGTAGGTTTTACT
GTAGAATTCCTACGCGGAGCCCCTCCTGTTCTTGTGGTTAAGTTCCAAAG
CTTTTCCGCCCGATGATAGTGAAATGTCAACTCTCAGGTTCTTACCCTCA
AATTGTTGTAAGTGGTGGACATTACCATGCCCCCTCCCCCGCCCCCCTCG
ACACCTATGTCCCGGTGTCCCCACTCAATATTCTCCTTCGCGCTTCCCTT
GTGGTGCTGGTCCGCAGGCTGTACGTTAAGGGCATCGAGCACCGTAGGGC
AGAGCCGTTGGACGTGCTCAAGAAGAGACAGGCTCACTTCATGCGCCGCA
TGCGTCGGCACTGGATTAACAGTCAGATCGAGGTTCGTACGGCTGTCTCT
CATCTTTTCGTGCTCTTTTTGAATCATCGTTGCCGTTGTTGTTGTTTTTG
TTGTTGTTGCTGCTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGACGTG
ATTGCTGTTGGCGAAATAATCTCATTGTCTTGTGGGTGCGGTTGCCATTA
AGGTTGGATTCACCTTGTTAAGGTCTGCGGCATGTATTCTTACGTCGTCA
TCATTGTTGTGCTTACTGCTGCTGTTGTTTTTGTTGTATTAACATGATTG
AGGTCTGTAGATATGTACATGTCTCGCGTTTTTTCTTTCATCCACACTTT
GGTCCTCGACGCGAGCTCTCGGTTTTTCCTTTTTTTTCTTGGGGATGGCA
TGCGTACACGAGTACAGGAAGCAATTGAAACGGCTCGCCTGACGTTTCTG
CGTTTCTTTGAAGCCCTCCATCCACTCTTGTTTTTCTCTCCCCTCCCCTT
TGTCTTGTTCCTTCGTTGACTGGGGGTGGAAATACCAAATTTGATGAGAT
GAAACCATTAGGAAAGCACAATGGTAGGGTTTCGTGTCCTTCCCCTGTTT
GTTTTTTTTTCACTCGTACTCTTGTTTTTTCTCCCCCTTCTCTTGTTTGT
TTTTCTTTGTTGATTGGAGGTGGAAATACCAACTTTGATGAAATGAAATC
ATTAGGAAAGCACAATGGTAGGATTTCGTGTCCTTCCCCTGTTTTTTTTT
TTTTTCACTCGTACTCTTGTTTATTTCTCCCCCTTCTCTTGCTTTTTTTT
CTTTGTTGATTGGAGATGGAACGCCAACTTTTTCATCAAAATAGCAAGCA
CCGTCAGTAGGGCACAGCGGAAAATTTCGTTGTTTTCGCCTTTTTTTTTT
TTTTTCCACCCCCCACTCTTGTTTTTTCCACCCCCCGCTTTTTTTTTGTT
TTTGCTTTTTTCTTAGTTGATTCGGGGTGGAATGCCAAATTTCATCTGTT
AAAATCACTGGGAGGGCACGGCGGAAGATTTTGTCTTGTATGGCTTTTTT
TCTTTCAATCCCACTCGTGTTTTGTCCCCCGGCTCTTTATTTTTTGTTTT
GTTTCATGTTTAATCGGGGTGGAATGCCAAATTTCGTTTAATGAATCGTT
AGGAGGGCACAGCGGAGGACCAAGCGAGGGAGCTTCCGGGGGACGAGGAG
GCTCGCAGGGGTATCCTACGTTCCCTCTCGGTTACGGCTATAGAGCGCAA
CCGGCGCGAACAGGTGTGTATTATGTCGTATGTTTTTTTGTATGTAGCAT
CGACCGCGCTAACCGGCCGACCATCGACAAGGCGTCAGTGTCATGCTGAC
CATTGTCAAGACGCCACTCTCGGTGTGTGTTCCTTTTGTTTGCATCGACC
ACGCTACCTAACGGCTGGCCAATGAGAGAGGGCACCATCCCCAGGGCGGT
TGA
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Coding sequence (CDS) from alignment at Scaffold_604:28076..30778-

>EsuBft329_21a-0001 ID=EsuBft329_21a-0001|Name=EsuBft329_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=246bp|location=Sequence derived from alignment at Scaffold_604:28076..30778- (Ectocarpus subulatus male Bft15b)
ATGGCTGAGAAGCTGTACGTTAAGGGCATCGAGCACCGTAGGGCAGAGCC
GTTGGACGTGCTCAAGAAGAGACAGGCTCACTTCATGCGCCGCATGCGTC
GGCACTGGATTAACAGTCAGATCGAGGAGGGCACAGCGGAGGACCAAGCG
AGGGAGCTTCCGGGGGACGAGGAGGCTCGCAGGGGTATCCTACGTTCCCT
CTCGGTTACGGCTATAGAGCGCAACCGGCGCGAACAGGGCGGTTGA
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