EsuBft89_24a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft89_24a-0001
Unique Name	EsuBft89_24a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_601	contig	Scaffold_601:426169..426924 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft89_24
Protein domains	IPR001878
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	75
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0008270

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft89_24a	EsuBft89_24a	Ectocarpus subulatus male Bft15b	gene	Scaffold_601 426169..426924 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft89_24a-0001-exon	EsuBft89_24a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_601 426169..426924 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft89_24a-0001-exon	agat-five_prime_utr-14840	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_601 426169..426214 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft89_24a-0001-cds	EsuBft89_24a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_601 426215..426805 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft89_24a-0001-exon	agat-three_prime_utr-22886	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_601 426806..426924 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft89_24a-0001	EsuBft89_24	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_601 426215..426805 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_601:426169..426924+
coding sequence from alignment at Scaffold_601:426169..426924+

spliced messenger RNA

>EsuBft89_24a-0001 ID=EsuBft89_24a-0001|Name=EsuBft89_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=756bp|location=Sequence derived from alignment at Scaffold_601:426169..426924+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCAGAGTCAGATTCGTGTGCAAGAGGAGAAACTCAAGTCATTGCGCATGC
GTTCGAATGAGAATCCCTCCATCTTCTTTACATCTATGAGAGAGACGCTT
GGTGTGCTTCAGATGCTGGAAGTTAAGAAAGATGACAGAGAGGTATGCAA
CCTGATGCTCGAGGGATTGTCACATGAGTATAAGACCCTGCGTGAAACTC
TGGTGGTGTTCTGTCCGAATGAACCGTCGTTCATAGAGACTAAAGTGCGT
GAGAGGTATCTCGACTTGCTGACTCAACCTGGTCCGAAGAAACACAGTGT
TGCACTCATGTCTAGACCTGTGAGGAAGAGTGCGAAGAAGCAGAACCAGA
AGTCAAAGTCTAACTCCGAGTCTGATTCGTCTAAGAAAAAGATTTTTCAG
GGGAAGTGTTTCAAGTGTGGGGAGAAGGGTCACTTGAAGATGGACTGCCT
GGCTCGTGTGATAGCTCATCCCTCTCAGACCGGACCATCCGAGGACGACA
AGGATGAGAACGGTGAGAAGTCTGACTTGGTGTTGTTGTTATCTCAAGCC
AACTCAAGCGAATGGAGTGGTGGCAAGTACATTGCAGCAATGTATGCCAA
AATCATGCAGAAGTGGCAGGAGTCCCGTGAGCAGTAGAAATGATGCTGTT
TTGGAACACCATGATACCATGCATCTTGAAGCGTTGTATACCGAAGCAGA
GGATGAGTTGAAGAAGTACGTCGGCAGTGACCGTGTTGTCCGTGATTCTA
TTCGCG

protein sequence of EsuBft89_24a-0001

>EsuBft89_24 ID=EsuBft89_24|Name=EsuBft89_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=196bp
MRSNENPSIFFTSMRETLGVLQMLEVKKDDREVCNLMLEGLSHEYKTLRE
TLVVFCPNEPSFIETKVRERYLDLLTQPGPKKHSVALMSRPVRKSAKKQN
QKSKSNSESDSSKKKIFQGKCFKCGEKGHLKMDCLARVIAHPSQTGPSED
DKDENGEKSDLVLLLSQANSSEWSGGKYIAAMYAKIMQKWQESREQ

mRNA from alignment at Scaffold_601:426169..426924+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft89_24a-0001 ID=EsuBft89_24a-0001|Name=EsuBft89_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=756bp|location=Sequence derived from alignment at Scaffold_601:426169..426924+ (Ectocarpus subulatus male Bft15b)
CCAGAGTCAGATTCGTGTGCAAGAGGAGAAACTCAAGTCATTGCGCATGC
GTTCGAATGAGAATCCCTCCATCTTCTTTACATCTATGAGAGAGACGCTT
GGTGTGCTTCAGATGCTGGAAGTTAAGAAAGATGACAGAGAGGTATGCAA
CCTGATGCTCGAGGGATTGTCACATGAGTATAAGACCCTGCGTGAAACTC
TGGTGGTGTTCTGTCCGAATGAACCGTCGTTCATAGAGACTAAAGTGCGT
GAGAGGTATCTCGACTTGCTGACTCAACCTGGTCCGAAGAAACACAGTGT
TGCACTCATGTCTAGACCTGTGAGGAAGAGTGCGAAGAAGCAGAACCAGA
AGTCAAAGTCTAACTCCGAGTCTGATTCGTCTAAGAAAAAGATTTTTCAG
GGGAAGTGTTTCAAGTGTGGGGAGAAGGGTCACTTGAAGATGGACTGCCT
GGCTCGTGTGATAGCTCATCCCTCTCAGACCGGACCATCCGAGGACGACA
AGGATGAGAACGGTGAGAAGTCTGACTTGGTGTTGTTGTTATCTCAAGCC
AACTCAAGCGAATGGAGTGGTGGCAAGTACATTGCAGCAATGTATGCCAA
AATCATGCAGAAGTGGCAGGAGTCCCGTGAGCAGTAGAAATGATGCTGTT
TTGGAACACCATGATACCATGCATCTTGAAGCGTTGTATACCGAAGCAGA
GGATGAGTTGAAGAAGTACGTCGGCAGTGACCGTGTTGTCCGTGATTCTA
TTCGCG

Coding sequence (CDS) from alignment at Scaffold_601:426169..426924+

>EsuBft89_24a-0001 ID=EsuBft89_24a-0001|Name=EsuBft89_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=591bp|location=Sequence derived from alignment at Scaffold_601:426169..426924+ (Ectocarpus subulatus male Bft15b)
ATGCGTTCGAATGAGAATCCCTCCATCTTCTTTACATCTATGAGAGAGAC
GCTTGGTGTGCTTCAGATGCTGGAAGTTAAGAAAGATGACAGAGAGGTAT
GCAACCTGATGCTCGAGGGATTGTCACATGAGTATAAGACCCTGCGTGAA
ACTCTGGTGGTGTTCTGTCCGAATGAACCGTCGTTCATAGAGACTAAAGT
GCGTGAGAGGTATCTCGACTTGCTGACTCAACCTGGTCCGAAGAAACACA
GTGTTGCACTCATGTCTAGACCTGTGAGGAAGAGTGCGAAGAAGCAGAAC
CAGAAGTCAAAGTCTAACTCCGAGTCTGATTCGTCTAAGAAAAAGATTTT
TCAGGGGAAGTGTTTCAAGTGTGGGGAGAAGGGTCACTTGAAGATGGACT
GCCTGGCTCGTGTGATAGCTCATCCCTCTCAGACCGGACCATCCGAGGAC
GACAAGGATGAGAACGGTGAGAAGTCTGACTTGGTGTTGTTGTTATCTCA
AGCCAACTCAAGCGAATGGAGTGGTGGCAAGTACATTGCAGCAATGTATG
CCAAAATCATGCAGAAGTGGCAGGAGTCCCGTGAGCAGTAG