EsuBft1089_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1089_6a-0001
Unique NameEsuBft1089_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_598contigScaffold_598:352973..353647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1089_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length67
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1089_6aEsuBft1089_6aEctocarpus subulatus male Bft15bgeneScaffold_598 352973..353647 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1089_6a-0001-exonEsuBft1089_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_598 352973..353647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1089_6a-0001-cdsEsuBft1089_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_598 352973..353647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1089_6a-0001EsuBft1089_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_598 352973..353647 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1089_6a-0001 ID=EsuBft1089_6a-0001|Name=EsuBft1089_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=675bp|location=Sequence derived from alignment at Scaffold_598:352973..353647- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAAGCACGTTACCCGTATGGGGCGCCAGCTCAAGGACCCCACGGT
GAAGACCACTTGGAAGACGTACCCCGAGGTCATGCGCAGGGTGGAGGATG
TTGTAGCCAGTATGGCACCCACGCGACGCTACAGAGACAAGTTCGGGCCA
CAGCAGCAGCACGGCGTGGTGGAGCCCAAGAAATCCAACGTGGCGACGTT
GGAGACGGCACACGACAGCCCGGAACAGCCCGCGACGTCTCTGCAGCGCC
AGCAGCAGGCGGCGATAAAGTCCCACAAATCCACACTGGCGGCGGCGGTA
CCGGCGCACGCCAACCCAGAGCAGCCCGCAACGGCACATCAGCGCAAGCA
GCAAGGGGCGGTGGAGCCCAAGATGTCTTTCATAACGCGTCTCGCCCTTC
GCTCTGACGCGTCCACGGCGGAGCACATGTCCGCTCCTGCGATGGTTTTG
TTCTTCTTCGCATGCCAGGGGTTCGGGCCCCGGGGGGAAGCGGGGGAACG
GCAGGCGACGACGGAGCCCGGCCCCGAAGACCGACTGGCGCCTGTAGGTC
CCTCCCTCTTGGGGGCCCAGGTAGCGCCAGCCGTTGCTCCTGTCGGGCAG
GGGAGCGGCCTGGTCGACCTGCTCGGCGAGCACCACCGGTACTCGGGCCG
CGGAGCCGTGCCGCCGGCGCAGTAA
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protein sequence of EsuBft1089_6a-0001

>EsuBft1089_6 ID=EsuBft1089_6|Name=EsuBft1089_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=224bp
MQKHVTRMGRQLKDPTVKTTWKTYPEVMRRVEDVVASMAPTRRYRDKFGP
QQQHGVVEPKKSNVATLETAHDSPEQPATSLQRQQQAAIKSHKSTLAAAV
PAHANPEQPATAHQRKQQGAVEPKMSFITRLALRSDASTAEHMSAPAMVL
FFFACQGFGPRGEAGERQATTEPGPEDRLAPVGPSLLGAQVAPAVAPVGQ
GSGLVDLLGEHHRYSGRGAVPPAQ
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mRNA from alignment at Scaffold_598:352973..353647-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1089_6a-0001 ID=EsuBft1089_6a-0001|Name=EsuBft1089_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=675bp|location=Sequence derived from alignment at Scaffold_598:352973..353647- (Ectocarpus subulatus male Bft15b)
ATGCAGAAGCACGTTACCCGTATGGGGCGCCAGCTCAAGGACCCCACGGT
GAAGACCACTTGGAAGACGTACCCCGAGGTCATGCGCAGGGTGGAGGATG
TTGTAGCCAGTATGGCACCCACGCGACGCTACAGAGACAAGTTCGGGCCA
CAGCAGCAGCACGGCGTGGTGGAGCCCAAGAAATCCAACGTGGCGACGTT
GGAGACGGCACACGACAGCCCGGAACAGCCCGCGACGTCTCTGCAGCGCC
AGCAGCAGGCGGCGATAAAGTCCCACAAATCCACACTGGCGGCGGCGGTA
CCGGCGCACGCCAACCCAGAGCAGCCCGCAACGGCACATCAGCGCAAGCA
GCAAGGGGCGGTGGAGCCCAAGATGTCTTTCATAACGCGTCTCGCCCTTC
GCTCTGACGCGTCCACGGCGGAGCACATGTCCGCTCCTGCGATGGTTTTG
TTCTTCTTCGCATGCCAGGGGTTCGGGCCCCGGGGGGAAGCGGGGGAACG
GCAGGCGACGACGGAGCCCGGCCCCGAAGACCGACTGGCGCCTGTAGGTC
CCTCCCTCTTGGGGGCCCAGGTAGCGCCAGCCGTTGCTCCTGTCGGGCAG
GGGAGCGGCCTGGTCGACCTGCTCGGCGAGCACCACCGGTACTCGGGCCG
CGGAGCCGTGCCGCCGGCGCAGTAA
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Coding sequence (CDS) from alignment at Scaffold_598:352973..353647-

>EsuBft1089_6a-0001 ID=EsuBft1089_6a-0001|Name=EsuBft1089_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=675bp|location=Sequence derived from alignment at Scaffold_598:352973..353647- (Ectocarpus subulatus male Bft15b)
ATGCAGAAGCACGTTACCCGTATGGGGCGCCAGCTCAAGGACCCCACGGT
GAAGACCACTTGGAAGACGTACCCCGAGGTCATGCGCAGGGTGGAGGATG
TTGTAGCCAGTATGGCACCCACGCGACGCTACAGAGACAAGTTCGGGCCA
CAGCAGCAGCACGGCGTGGTGGAGCCCAAGAAATCCAACGTGGCGACGTT
GGAGACGGCACACGACAGCCCGGAACAGCCCGCGACGTCTCTGCAGCGCC
AGCAGCAGGCGGCGATAAAGTCCCACAAATCCACACTGGCGGCGGCGGTA
CCGGCGCACGCCAACCCAGAGCAGCCCGCAACGGCACATCAGCGCAAGCA
GCAAGGGGCGGTGGAGCCCAAGATGTCTTTCATAACGCGTCTCGCCCTTC
GCTCTGACGCGTCCACGGCGGAGCACATGTCCGCTCCTGCGATGGTTTTG
TTCTTCTTCGCATGCCAGGGGTTCGGGCCCCGGGGGGAAGCGGGGGAACG
GCAGGCGACGACGGAGCCCGGCCCCGAAGACCGACTGGCGCCTGTAGGTC
CCTCCCTCTTGGGGGCCCAGGTAGCGCCAGCCGTTGCTCCTGTCGGGCAG
GGGAGCGGCCTGGTCGACCTGCTCGGCGAGCACCACCGGTACTCGGGCCG
CGGAGCCGTGCCGCCGGCGCAGTAA
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