EsuBft1311_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1311_10a-0001
Unique Name	EsuBft1311_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_589	contig	Scaffold_589:172902..173906 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1311_10
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	100
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1311_10a	EsuBft1311_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_589 172902..173906 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1311_10a-0001-exon	EsuBft1311_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_589 172902..173906 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1311_10a-0001-exon	agat-five_prime_utr-1911	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_589 172902..173011 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1311_10a-0001-cds	EsuBft1311_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_589 173012..173890 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1311_10a-0001-exon	agat-three_prime_utr-2896	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_589 173891..173906 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1311_10a-0001	EsuBft1311_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_589 173012..173890 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_589:172902..173906+
coding sequence from alignment at Scaffold_589:172902..173906+

spliced messenger RNA

>EsuBft1311_10a-0001 ID=EsuBft1311_10a-0001|Name=EsuBft1311_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1005bp|location=Sequence derived from alignment at Scaffold_589:172902..173906+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCCTGTTCGTGTCTGCTGTCCTTAATACAAGTGATACCATCATCTTCAA
CACAGATACAGGGAATACGAACACTCTAGAGTGTATCCCTCGAAGGAACC
CGTGCTGGAGATGAATGGCGCCGATGTTGCAGCAGAGGCTGCCGACGTCA
CCACTAGTACGCAGGGCAGAGTTGACAACCTAGAGAGAAAAGTTACAGGC
CTGACGGACGAGGCACAGCAGCTGCCAGGGCCTCACCGCGGCGCCCTCGG
AAAGTTTGAGAATGAGGGGGAGTCCGGCGGCGCTGGGGTGGGCGCTGTCA
TCATGGGCACTACGTCTGCCCGCGGTCTGCTGGAAGAGGGGCCGCACAAC
GACGGAATCACGCCGCCCGCACAGCACGGGGGAAGAAGCACCAGACCGGG
AGCCAGGCTGGTACTGCCAAGGATCCCTGCTGGAGTGGACCCGGGCATTG
GACCGGGCAGCGGGGAGGTCATGGGGTCATCATCCCAAGAGCAGCCTGCT
GCGGTGGGCGCTTACATAGACTACACGGCTGCAGAAGAGACCATCAGCAG
TAGACCGGTTGCGGAAGGCGAACCGGTGTGGGCATTTCAGGTCCCTGCTA
ACGGTGGGTTTGGTAGATTCCAGAACACCGAATACCTCAAGATAGGCAGC
GATGGTAGAGATGCAGCTGCCGCTCGAGGCACTGGCCGAAGGGTCAGAGC
AACGTACTCATCACGTCGAGAAGAGCTGTGCGGTGCTGGAGGGGGTGCCG
CAGACGGCACACCAAGTGTGCCTGTTGACCGCGGGAAAGTACTTGCGTCT
CGAGAGCTGGGGCATCATGCATCCCCGCGACGCCGTCGGTGTGCCATCAA
AACAACCAGCGCAGGCCACTGCGCGCGCACCATCCACACACAGCAGCAGC
AGCAGCAGGAGATGGTGAAGATGGCACCATTACAGCAGCGTGGAAGGGTC
AAGACACAGAAAGCCGGCCGCAAGGCCATGTGCCCATAGCCGCGACGGGA
GGGGC

protein sequence of EsuBft1311_10a-0001

>EsuBft1311_10 ID=EsuBft1311_10|Name=EsuBft1311_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=292bp
MNGADVAAEAADVTTSTQGRVDNLERKVTGLTDEAQQLPGPHRGALGKFE
NEGESGGAGVGAVIMGTTSARGLLEEGPHNDGITPPAQHGGRSTRPGARL
VLPRIPAGVDPGIGPGSGEVMGSSSQEQPAAVGAYIDYTAAEETISSRPV
AEGEPVWAFQVPANGGFGRFQNTEYLKIGSDGRDAAAARGTGRRVRATYS
SRREELCGAGGGAADGTPSVPVDRGKVLASRELGHHASPRRRRCAIKTTS
AGHCARTIHTQQQQQQEMVKMAPLQQRGRVKTQKAGRKAMCP

mRNA from alignment at Scaffold_589:172902..173906+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1311_10a-0001 ID=EsuBft1311_10a-0001|Name=EsuBft1311_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1005bp|location=Sequence derived from alignment at Scaffold_589:172902..173906+ (Ectocarpus subulatus male Bft15b)
GTCCTGTTCGTGTCTGCTGTCCTTAATACAAGTGATACCATCATCTTCAA
CACAGATACAGGGAATACGAACACTCTAGAGTGTATCCCTCGAAGGAACC
CGTGCTGGAGATGAATGGCGCCGATGTTGCAGCAGAGGCTGCCGACGTCA
CCACTAGTACGCAGGGCAGAGTTGACAACCTAGAGAGAAAAGTTACAGGC
CTGACGGACGAGGCACAGCAGCTGCCAGGGCCTCACCGCGGCGCCCTCGG
AAAGTTTGAGAATGAGGGGGAGTCCGGCGGCGCTGGGGTGGGCGCTGTCA
TCATGGGCACTACGTCTGCCCGCGGTCTGCTGGAAGAGGGGCCGCACAAC
GACGGAATCACGCCGCCCGCACAGCACGGGGGAAGAAGCACCAGACCGGG
AGCCAGGCTGGTACTGCCAAGGATCCCTGCTGGAGTGGACCCGGGCATTG
GACCGGGCAGCGGGGAGGTCATGGGGTCATCATCCCAAGAGCAGCCTGCT
GCGGTGGGCGCTTACATAGACTACACGGCTGCAGAAGAGACCATCAGCAG
TAGACCGGTTGCGGAAGGCGAACCGGTGTGGGCATTTCAGGTCCCTGCTA
ACGGTGGGTTTGGTAGATTCCAGAACACCGAATACCTCAAGATAGGCAGC
GATGGTAGAGATGCAGCTGCCGCTCGAGGCACTGGCCGAAGGGTCAGAGC
AACGTACTCATCACGTCGAGAAGAGCTGTGCGGTGCTGGAGGGGGTGCCG
CAGACGGCACACCAAGTGTGCCTGTTGACCGCGGGAAAGTACTTGCGTCT
CGAGAGCTGGGGCATCATGCATCCCCGCGACGCCGTCGGTGTGCCATCAA
AACAACCAGCGCAGGCCACTGCGCGCGCACCATCCACACACAGCAGCAGC
AGCAGCAGGAGATGGTGAAGATGGCACCATTACAGCAGCGTGGAAGGGTC
AAGACACAGAAAGCCGGCCGCAAGGCCATGTGCCCATAGCCGCGACGGGA
GGGGC

Coding sequence (CDS) from alignment at Scaffold_589:172902..173906+

>EsuBft1311_10a-0001 ID=EsuBft1311_10a-0001|Name=EsuBft1311_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=879bp|location=Sequence derived from alignment at Scaffold_589:172902..173906+ (Ectocarpus subulatus male Bft15b)
ATGAATGGCGCCGATGTTGCAGCAGAGGCTGCCGACGTCACCACTAGTAC
GCAGGGCAGAGTTGACAACCTAGAGAGAAAAGTTACAGGCCTGACGGACG
AGGCACAGCAGCTGCCAGGGCCTCACCGCGGCGCCCTCGGAAAGTTTGAG
AATGAGGGGGAGTCCGGCGGCGCTGGGGTGGGCGCTGTCATCATGGGCAC
TACGTCTGCCCGCGGTCTGCTGGAAGAGGGGCCGCACAACGACGGAATCA
CGCCGCCCGCACAGCACGGGGGAAGAAGCACCAGACCGGGAGCCAGGCTG
GTACTGCCAAGGATCCCTGCTGGAGTGGACCCGGGCATTGGACCGGGCAG
CGGGGAGGTCATGGGGTCATCATCCCAAGAGCAGCCTGCTGCGGTGGGCG
CTTACATAGACTACACGGCTGCAGAAGAGACCATCAGCAGTAGACCGGTT
GCGGAAGGCGAACCGGTGTGGGCATTTCAGGTCCCTGCTAACGGTGGGTT
TGGTAGATTCCAGAACACCGAATACCTCAAGATAGGCAGCGATGGTAGAG
ATGCAGCTGCCGCTCGAGGCACTGGCCGAAGGGTCAGAGCAACGTACTCA
TCACGTCGAGAAGAGCTGTGCGGTGCTGGAGGGGGTGCCGCAGACGGCAC
ACCAAGTGTGCCTGTTGACCGCGGGAAAGTACTTGCGTCTCGAGAGCTGG
GGCATCATGCATCCCCGCGACGCCGTCGGTGTGCCATCAAAACAACCAGC
GCAGGCCACTGCGCGCGCACCATCCACACACAGCAGCAGCAGCAGCAGGA
GATGGTGAAGATGGCACCATTACAGCAGCGTGGAAGGGTCAAGACACAGA
AAGCCGGCCGCAAGGCCATGTGCCCATAG