EsuBft1311_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1311_8a-0001
Unique NameEsuBft1311_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_589contigScaffold_589:157671..158288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005100548.1
ProteomeIdEsuBft1311_8
Protein domainsPTHR25952
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl33208|Metazoa
Length61
Hectar predicted targeting categoryother localisation
Evalue3.01e-10
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3E41I@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_8aEsuBft1311_8aEctocarpus subulatus male Bft15bgeneScaffold_589 157671..158288 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_8a-0001-exonEsuBft1311_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_589 157671..158288 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_8a-0001-exonagat-three_prime_utr-2906Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_589 157671..157757 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_8a-0001-cdsEsuBft1311_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_589 157758..158198 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_8a-0001-exonagat-five_prime_utr-1920Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_589 158199..158288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_8a-0001EsuBft1311_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_589 157758..158198 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1311_8a-0001 ID=EsuBft1311_8a-0001|Name=EsuBft1311_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=618bp|location=Sequence derived from alignment at Scaffold_589:157671..158288- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGTACAATCTCCGCGGACGGGAAGGCCGGCCGGGATTTCACGAGTCGCAG
CTGCCGAGCGTGGAAGTACGACCGCCGGAACAGTGCTTCGATGTACGACA
GGCGACGGGCCGACCGCCAGCTCAAGATCCGGCTACTCCAGGCTGAAGTG
GTGGAGACTCTCCTGTATGGGTGCGCCTCGTGGAGCCTAACAGCGGAGCA
CTACACGAAGCTCAATGGGACCCACCGCCAGTTCCTCACACGGTGCATCG
GCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCAGACC
CTTATCCAGACAGGCTGCGAGGAAACCATCGAGGCCACCATGCGCAAACG
GAGACTGTGTTTCGCGGGCTTTGTTATGCGCATGGAGGACAACCGCCTCC
CCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGGATACCGGGGC
GGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGGCCTT
CAATATGAGAGACGAAAAGGAAGGGGGTTAATGGAAAGAGAGCGCCAAGG
ACCCGGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGGCATGGTTCATG
AGGAAATGGCACAGGCAG
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protein sequence of EsuBft1311_8a-0001

>EsuBft1311_8 ID=EsuBft1311_8|Name=EsuBft1311_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=146bp
MYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLT
RCIGWSKRKRSDRPLSYAQTLIQTGCEETIEATMRKRRLCFAGFVMRMED
NRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMRDEKEGG
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mRNA from alignment at Scaffold_589:157671..158288-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1311_8a-0001 ID=EsuBft1311_8a-0001|Name=EsuBft1311_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=618bp|location=Sequence derived from alignment at Scaffold_589:157671..158288- (Ectocarpus subulatus male Bft15b)
CGTACAATCTCCGCGGACGGGAAGGCCGGCCGGGATTTCACGAGTCGCAG
CTGCCGAGCGTGGAAGTACGACCGCCGGAACAGTGCTTCGATGTACGACA
GGCGACGGGCCGACCGCCAGCTCAAGATCCGGCTACTCCAGGCTGAAGTG
GTGGAGACTCTCCTGTATGGGTGCGCCTCGTGGAGCCTAACAGCGGAGCA
CTACACGAAGCTCAATGGGACCCACCGCCAGTTCCTCACACGGTGCATCG
GCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCAGACC
CTTATCCAGACAGGCTGCGAGGAAACCATCGAGGCCACCATGCGCAAACG
GAGACTGTGTTTCGCGGGCTTTGTTATGCGCATGGAGGACAACCGCCTCC
CCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGGATACCGGGGC
GGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGGCCTT
CAATATGAGAGACGAAAAGGAAGGGGGTTAATGGAAAGAGAGCGCCAAGG
ACCCGGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGGCATGGTTCATG
AGGAAATGGCACAGGCAG
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Coding sequence (CDS) from alignment at Scaffold_589:157671..158288-

>EsuBft1311_8a-0001 ID=EsuBft1311_8a-0001|Name=EsuBft1311_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=441bp|location=Sequence derived from alignment at Scaffold_589:157671..158288- (Ectocarpus subulatus male Bft15b)
ATGTACGACAGGCGACGGGCCGACCGCCAGCTCAAGATCCGGCTACTCCA
GGCTGAAGTGGTGGAGACTCTCCTGTATGGGTGCGCCTCGTGGAGCCTAA
CAGCGGAGCACTACACGAAGCTCAATGGGACCCACCGCCAGTTCCTCACA
CGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTA
TGCCCAGACCCTTATCCAGACAGGCTGCGAGGAAACCATCGAGGCCACCA
TGCGCAAACGGAGACTGTGTTTCGCGGGCTTTGTTATGCGCATGGAGGAC
AACCGCCTCCCCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGG
ATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACC
TCGTGGCCTTCAATATGAGAGACGAAAAGGAAGGGGGTTAA
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