EsuBft1311_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1311_6a-0001
Unique NameEsuBft1311_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_589contigScaffold_589:137828..139488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1311_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length84
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_6aEsuBft1311_6aEctocarpus subulatus male Bft15bgeneScaffold_589 137828..139488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_6a-0001EsuBft1311_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_589 137855..139256 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_6a-0001-exonagat-exon-44668Ectocarpus subulatus male Bft15bexonScaffold_589 137828..137994 +
EsuBft1311_6a-0001-exonEsuBft1311_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_589 138161..138309 +
EsuBft1311_6a-0001-exonagat-exon-44669Ectocarpus subulatus male Bft15bexonScaffold_589 138595..138872 +
EsuBft1311_6a-0001-exonagat-exon-44670Ectocarpus subulatus male Bft15bexonScaffold_589 139239..139488 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_6a-0001-exonagat-five_prime_utr-1918Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_589 137828..137854 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_6a-0001-cdsEsuBft1311_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_589 137855..137994 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_6a-0001-exonagat-three_prime_utr-2902Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_589 139257..139488 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1311_6a-0001 ID=EsuBft1311_6a-0001|Name=EsuBft1311_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=844bp|location=Sequence derived from alignment at Scaffold_589:137828..139488+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGATACGAAGGATTGTTGAGGCGACCCATGCTCGTGGATGCAACGGCTCA
AGCCCTGCTCAACGAGGCGGACAGCGCGGACGGTGGGACCAGGGGGTCGA
CCATAAAAACCTGCGCCAACAATGCTTGCTATTTCAACGCCGTTGCGTTG
GGGGGGTTTGGCGCCAGCACTCCTGAGGTCTTGACAGAGAGCGTAGCGCG
AGTTCTGTACCTGCTTGCCGTGCGAGAGGTCGCTGGCGAGTTCAGCGACA
GCCAACAGGCGGCCATACCGTGGACAGCACAAGCGTTTGGGGTGAAGATG
CGGTGCTTTCACCCAGGTGGGTCGATGAAGGATGTTGAGGGTGGGGCGTC
GTTCGCCGGGAAATGGAGCAAGGAATTGATCGGTCCGCTCAACCCCTCTG
GGGTTGAGCCAACCATCTACCTCACGATGTCCATCACGTCTCACAAGCAC
GCGTTCAGCAGCATCCACGAGTTCACGGAGACAACTCGCCGCTGGGAACG
CGGCGCCGATGGCGAACTCCACCAAATGCGATGGATGCCTGATTTCAATC
ACTGGGTGCTCATGTTGCCCCCGGCAAACGCAGGTGCCCTTCAGGCCTTT
TCCCGGAGTTAGCTGCGAGAAAGTCTTCCGGGAAGGACTCCAAGCTTGCG
TCAAGGTTGGTATCCGCTGGACGCCTGCATCGACAACAACAGAATACAAG
AAATCAGCGATCGCGCACATGATACGGGAAAAAAATAATCATGCGCGAAC
ATGGTGTTGCCGTTTCGCCAAACGCGTGAGAATCTCCCTCTTCAACAAAG
ACATCCACTGTGGGAGAAGAAAGACCCCCATACGTGCTATAAGG
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protein sequence of EsuBft1311_6a-0001

>EsuBft1311_6 ID=EsuBft1311_6|Name=EsuBft1311_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=194bp
MLVDATAQALLNEADSADGGTRGSTIKTCANNACYFNAVALGGFGASTPE
VLTESVARVLYLLAVREVAGEFSDSQQAAIPWTAQAFGVKMRCFHPGGSM
KDVEGGASFAGKWSKELIGPLNPSGVEPTIYLTMSITSHKHAFSSIHEFT
ETTRRWERGADGELHQMRWMPDFNHWVLMLPPANAGALQAFSRS
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mRNA from alignment at Scaffold_589:137828..139488+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1311_6a-0001 ID=EsuBft1311_6a-0001|Name=EsuBft1311_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1661bp|location=Sequence derived from alignment at Scaffold_589:137828..139488+ (Ectocarpus subulatus male Bft15b)
GGATACGAAGGATTGTTGAGGCGACCCATGCTCGTGGATGCAACGGCTCA
AGCCCTGCTCAACGAGGCGGACAGCGCGGACGGTGGGACCAGGGGGTCGA
CCATAAAAACCTGCGCCAACAATGCTTGCTATTTCAACGCCGTTGCGTTG
GGGGGGTTTGGCGCCAGGTACAAAACCCCTGACGAAGCGCTGGAGCTTTC
TCTGTCGGTGCGTGTAGCCGTAATTCGAGCGGCCCTAGTACATTTGCAGA
CATTATTCATCAGCGGTCCTGGGTACGGTGGCTTCTACTGTACGCTGAAG
GCGTATTCCGCGCGCTTGGAGGCTCGGGTGCAGCACTCCTGAGGTCTTGA
CAGAGAGCGTAGCGCGAGTTCTGTACCTGCTTGCCGTGCGAGAGGTCGCT
GGCGAGTTCAGCGACAGCCAACAGGCGGCCATACCGTGGACAGCACAAGC
GTTTGGGGTGAAGATGCGGTGCTTTCACCCAGGTGAGTTGGTTTGTATTC
AGGATGATTTCCCCGTAAGATAGAAGACGGCAAACTTGCAAAGCTAAATC
GGTATGAGGGCTCCCGCTCTCGTTAGGTCTCCACCTGTCACGATTAACCC
GGACAACCCCCTTCCACCACCCCCAGGACAGGATTATCTCTCTTGTGGTA
CAGGGACGCTTCGGATAAGTGCTTGTCACCTTCATTTAGTATCCTTATAT
CCCAATAGCTTGTGCAAATGAGGGCGATCCTTTGATAACGTTGCTCACAC
ATTATGTCACTGGGCAGGTGGGTCGATGAAGGATGTTGAGGGTGGGGCGT
CGTTCGCCGGGAAATGGAGCAAGGAATTGATCGGTCCGCTCAACCCCTCT
GGGGTTGAGCCAACCATCTACCTCACGATGTCCATCACGTCTCACAAGCA
CGCGTTCAGCAGCATCCACGAGTTCACGGAGACAACTCGCCGCTGGGAAC
GCGGCGCCGATGGCGAACTCCACCAAATGCGATGGATGCCTGATTTCAAT
CACTGGGTGCTCATGTTGCCCCCGGCAAACGCAGGTGCCCTTCAGGTGAG
ACAGACAGGACGCCGGGTGTCCGGACGCCGGGTGTGTTGTTGCTCATTGT
GGGGCGCAAAAGACGTACGGAGCTTTGTGAAGTGTTCATTCTTTTGACCC
CTCGGCCGCAGTTCATTTCCTGAGTATACCACACACCCCAGAATTCGCCC
ATCTTCGCATTGTTCGCACGCGTGTATTTCGCTCTGCGCAGAAACACACA
AACAGACGGGGGGTTCGTTTTCAGCCAACCGCCCCGGTCGGCGCAAGGTT
CCAGAAAAGAAAGTGGCATTTTGAACGCCACCCCTTTCGTCGCCAACGAC
ATGGCGGCCTTGACAAAAGTCAGAGCATTGTTGTATGGAGGGCTCGTCAC
CACCCACTCAGGCCTTTTCCCGGAGTTAGCTGCGAGAAAGTCTTCCGGGA
AGGACTCCAAGCTTGCGTCAAGGTTGGTATCCGCTGGACGCCTGCATCGA
CAACAACAGAATACAAGAAATCAGCGATCGCGCACATGATACGGGAAAAA
AATAATCATGCGCGAACATGGTGTTGCCGTTTCGCCAAACGCGTGAGAAT
CTCCCTCTTCAACAAAGACATCCACTGTGGGAGAAGAAAGACCCCCATAC
GTGCTATAAGG
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Coding sequence (CDS) from alignment at Scaffold_589:137828..139488+

>EsuBft1311_6a-0001 ID=EsuBft1311_6a-0001|Name=EsuBft1311_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=585bp|location=Sequence derived from alignment at Scaffold_589:137828..139488+ (Ectocarpus subulatus male Bft15b)
ATGCTCGTGGATGCAACGGCTCAAGCCCTGCTCAACGAGGCGGACAGCGC
GGACGGTGGGACCAGGGGGTCGACCATAAAAACCTGCGCCAACAATGCTT
GCTATTTCAACGCCGTTGCGTTGGGGGGGTTTGGCGCCAGCACTCCTGAG
GTCTTGACAGAGAGCGTAGCGCGAGTTCTGTACCTGCTTGCCGTGCGAGA
GGTCGCTGGCGAGTTCAGCGACAGCCAACAGGCGGCCATACCGTGGACAG
CACAAGCGTTTGGGGTGAAGATGCGGTGCTTTCACCCAGGTGGGTCGATG
AAGGATGTTGAGGGTGGGGCGTCGTTCGCCGGGAAATGGAGCAAGGAATT
GATCGGTCCGCTCAACCCCTCTGGGGTTGAGCCAACCATCTACCTCACGA
TGTCCATCACGTCTCACAAGCACGCGTTCAGCAGCATCCACGAGTTCACG
GAGACAACTCGCCGCTGGGAACGCGGCGCCGATGGCGAACTCCACCAAAT
GCGATGGATGCCTGATTTCAATCACTGGGTGCTCATGTTGCCCCCGGCAA
ACGCAGGTGCCCTTCAGGCCTTTTCCCGGAGTTAG
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