EsuBft1311_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
ProteomeId	EsuBft1311_4
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SignalP-TM
Protein domains	TMhelix
Protein domains	SignalP-noTM
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	TRANSMEMBRANE
Protein domains	SIGNAL_PEPTIDE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	4
Length	187
Hectar predicted targeting category	signal peptide
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-13_000740.1
Date last modified	2016-06-14
Date creation	2016-06-14

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_589:119114..125670+
coding sequence from alignment at Scaffold_589:119114..125670+

spliced messenger RNA

>EsuBft1311_4a-0001 ID=EsuBft1311_4a-0001|Name=EsuBft1311_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1879bp|location=Sequence derived from alignment at Scaffold_589:119114..125670+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGATCCGAGATGGGGTCGAGGCAATATACCGAGATTGCGAGTCCTGTGCT
GCCATCCCACAACTTTCGCGCGCATTCGTCCTTCAGAGAGCAAGCCAGCA
ACACCAACATGCAGTACTCCCTCGTTTTCCTGGCCGTTGTGGCGATGCTG
GGTTCGGTGCTTGGATTCCAGGTTGCTCCCAGGGGATTGCCGACGGCATC
GCGCTGCTCGGGAGTGTCCACGTCCCCGCGGGCATCGTCCTCGTTCACCG
CACGACCGGTGGCGGCGACAGCAGCAGGGGGAGCAGCGCCCAGAGCCTCC
GCGCACAAGAGGAGACAACAACGGTTCAGCATGCAGTTCGGAGAAGGAGG
CGGGCCAATCGAGAAGGGAACCATGCCGTCCTACGAAGAAGAGCAGGATA
AGGCGTTCTTCAACAGCGAGCTGGACAACGCCCCAGCGACGGAAAAGGTG
AAGGACCCCGTTGTGATCATCACTCTGGCCTGGATCCTGGGGATGTTCCT
CCTCGCCACCGGGCTCATCCTCAACGGCGTCAACTAACCGGTTGTCTCTT
TGGCTCCATCACGCTGGCCTGGATGGTGGTGGGGGTGTTTTGTTCTTCCT
GGCCGCGAGTCTCCTCCTCCTCAACGTTGCTAACTACAAACATTTGACTT
TTGTGTGGTTGTCTATAGACCCAACGAGGGCGATCTTGGGAAGAAAACTA
GAATGCGGCAGCAGACCATCTTTGTATTAGAAGGGAACATGTTCATCGCT
ACGCAAGGCGTGTCGCTAACCGAAAGGGTCGCCTGGACCCACCAGTGTAC
GTACAGGGTTCGGGGATCGGACTTCGGGGTGATCTCTCTCTCTTTCTATG
CATCTTTTATCGGTGGTTGATGTTGTTGTGACGAAGGAGCTTAATGGGGG
CTGGTGGAGGTGTAGAAGTCACCGATCAGCAAGAGCTCACATAGTTAGGC
TATTTGCGTTTTCGTGGGAGTTGTATGTAGGTTAGAGGACGGGGGAAATG
CAGCAGACGCGGCCTGGTTGGATGCTTCTGTCGGCCCAAGAAGGAAGTAC
ACCATGTAGCCTTGCATTTTTCCGTTCTATTTTTTTTAAGATATAAAGCT
GGGAACACAATTTTTGTTTCGGTCACTTGTTCTAGCCCTTCTGCTTTTCG
TAGCGAGGAATGCCCGGGTTTCGCTTTTGTGGCGTGCCCACAATGAAGAA
ACGTTTGGTGGAGCACCGTGTCGGACCACACAAAGTCACGTTGCATTTTT
TTTGTTTGCCCTCCATATCCGAAAGTGCTGTAGGATTTCTCGAGGTAAGA
GCCGCTCCAGTAGTGGGCTCACCGGCGGGATTCCTCGTACACGCAGAAGG
TTTGCATGGGAGATGAATTTATGCCTGAATTTTCTGGTGGTGGCAAAATA
TGGGAACGAACCTAACTACGATGAGTGATTCTTGGAATAGGTGGTGGCTG
CGTGCGTAGGCTAAGCTCTTTGTCTGAAAGTGGCACGTTGCATGGTCGGG
GTGTGGAGAAGTCGCTCTTTCTAGGGACGGTCGCCGTCTGCACGACGGCT
TCATGGCTCCAGCATGTTTCTCTTGCGGGCAAGATTTCAGGGGCGGGTGG
TCATGTCGTACTTAAGGTTAGGGTTGGATGTCGCGGGAGCTTGCCGAAGA
TAGACAAAACAAGCGTGAACGAGAACGCAGCCTGACTGCTGAGAATGGTG
CAGTTGGTGAAGTGATGATGATTTGGTGAGCATTCTGCACCTGGCTGAGC
TGGAGAGCGATCCATTCGCACACTTTCGCCCCTCTGCCGCAAATGCTGGG
CGGTTTGGGAACGAGTTCTCAAAAGTGGCATCGTGGAAAAATCAGCGGTT
GTCTTCTCACATTGTGATTGTCGGTTGCT

protein sequence of EsuBft1311_4a-0001

>EsuBft1311_4 ID=EsuBft1311_4|Name=EsuBft1311_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=142bp
MQYSLVFLAVVAMLGSVLGFQVAPRGLPTASRCSGVSTSPRASSSFTARP
VAATAAGGAAPRASAHKRRQQRFSMQFGEGGGPIEKGTMPSYEEEQDKAF
FNSELDNAPATEKVKDPVVIITLAWILGMFLLATGLILNGVN

mRNA from alignment at Scaffold_589:119114..125670+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1311_4a-0001 ID=EsuBft1311_4a-0001|Name=EsuBft1311_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6557bp|location=Sequence derived from alignment at Scaffold_589:119114..125670+ (Ectocarpus subulatus male Bft15b)
TGATCCGAGATGGGGTCGAGGCAATATACCGAGATTGCGAGTCCTGTGCT
GCCATCCCACAACTTTCGCGCGCATTCGTCCTTCAGGTATGCGTGTGGCT
TCGCTTGTTTAAAGGAGAGTGTACAAGACGCTAGCCTCTGTCTTGCCGGC
CAGCGTTTGGATCATGCATGAAGAAAATGCCGCAGCGCCCAACGCGCCCG
CTATTTGGCTTCTGGTAGCAAACATCCCCCACCGTCTTTGCCCTCACGCT
CGGTCTTTCCAGAGAGCAAGCCAGCAACACCAACATGCAGTACTCCCTCG
TTTTCCTGGCCGTTGTGGCGATGCTGGGTTCGGTGCTTGGATTCCAGGTG
AGTGTTTCTTTGTCGTCAACGCGGCCTCCTTTTGCGGAAATAAACATGTT
CCTAAGCTGCTGTTTGTCTCAGAGTTAAGAGAGAGCGGGCGGTGACGTTG
TTGACACCACGTATGTGCCTCTTCGCCCTCTAACAACAGCAGCAGCAGTG
TAGCAAGTGGGATACAGCAAGGGTCAACGCCCCCCGCTCCCCCCCCCCTT
CCCTGTCCTCCTTGTGGTGTGCACTCGGGTGTGCTTGCCTGGGTGGGGCC
TTGGTAGGTGGCCGCGGGATGACCATTACAGCCTTTGGATAGCAGCAGCA
ATGAATTTTAGTAGACTCATAATAAACGAAGTACTGCTACACATCCAAGC
TCAGCCGAGATTCACCGACTGCTGTTGTAGGGACTTGAACGCATCCTTCC
ACTGTGGTTAGATCTCGAACTATTTCTGTGTGTTGTGTGCCTTCCTATTT
TTGAGATTGGCTACACCGGAAATCATGCTGGAATTGTGTTGATTGACTTG
CGTATACTCGCCTTGTTGCCGTCAATACAATATTGCAGCGGGTGACGTGA
GATACCACGCCTCGTTTGTACGGATTTTCAAAGATTGTTGCTCCACACAG
CAGAAAGAGTGGTAATGCCGGAAATGGCGGCGTTGAAAACGTCTTGCCGA
AATCTTTCCGAGCGCGTGCAATCATGCAGTTTATTGCGGATTCCTCTTTG
TCATGGAGTGATCGAGCTTTTCATACATCGGTCCGGGGGTGCGTGGTGCG
TATCGTATGTCACCTGTTGAACGGGGGCGTCTTGCCAGACCCCCCGCAAC
ACTGTAGAAACCAAAGGCAGCACCACGCTAACGCTAGAGTTCATGACCAA
TTTATTCCAGCCCCTTTCTAGGATAGAGATGAATCTGTTGTGTTTTGAAT
AATAACAAAAAACACAAACAAGAACCTTACTGCACTGTCCGAGTGTGCTG
CCGCAAGGATGCGAAAGATGGCAGCAACCCCCCGTGAGACCGGCTTCCAA
AGCTCGAATGCCCCACGATCAAGTGGGTGCGGAGAGAGCCCGAATCGTCT
ACGGAAAGCCTTCGACGAGATGTTTCCAAAACCACCCTGTGTGGTGTTGG
TACAATCTCGGTTATGGTGGAGCCATCGAGCTTTGAAAATCGGTTTAGGG
GGGTGCCATCGCTCCGCCTTTGTACGGTGTACGGCTATTTCGTGGAAAAG
CGAACCTTCGAGTAGTAATTTCTGAAGTCGTGGCCCGTTCTTCACACACC
CTTAAATCTCTGCTCGGTGATTTCGACCAAGGAGGCTCGCTGTGTGTGTT
TGGGGGGAAGGAAACGGGGGGGGGGGGGCTCTATCCCTCTCTGGTCTACA
CATCGCTCTTGGCGGAGCGATACTCGAATAGGTACAGTTTCAACAACACA
ACAGTCACGGCAATCATTCGAACAAACACAGCTTGGACCGAAGAAGCTAT
TTGCAGGTTTGACATGCGAACATGCCGCGATCATGCGAACCTACTGCGGT
TGCCTTGTTGTCGAAAGCGTTGCACAGGTCTACAGCCTATTTTGGGTTTA
ACCCATGCTAAATTTGTGAAAAGGTCGTTTGGCTTAAGTTTCCACAGTAC
ACGCACGCAGCGCTTCGAAAGTGCGGTCAACCGGGCGTCCGCACTACTGC
TGTCCAGCGCTCGATCTCGTTCCAATCCGTAACGGCCTAAACCCGACCAC
CAAATGTCTGTTACAGCAAAAAGGCGCCAACACTGGAGAACCTCTGTTAT
AGTTTTGGCCCAGGCTGGAGTTCTTACCCTATTCCCAGGGTCACGGTATG
AACGGCCGCTCTAAAGGTTTTAGCGAAGGGTTTCTTAACCGGGTTCACAA
AAATGGTGCTCAAGTTCTTTGACGTTGGGTTTTTCGAGGCTCAAGCAAGG
ACCAAGTTTTCCTGTGCGGGCGCTGCCGCTATATTGGTTTTAGTTCTTGA
CCAGGTTCACAAATATGGTGCTCAAGTTCTTAGACGTTGGGTTTACAGAG
GCTCAACTGAGGACCAAGTTTTTCTGTGCTGTCTCCACGACAAACGTGTC
AAGAAGGCCCTTCGGGAAGCTGTCTCTTATTCTGCGACATGTGACAGCAA
CAGCACTTTATTTTGTTTTGCCGGCAGGTTGCTCCGAGGGGATCTCTCAC
GAACGATGTAGGGACAAGGGACATTGTTTTGTTCGTAAGGGGTCTTCAAA
GGATTGTTCTCTGATTCTGCCAAGATACGCACATTGCGTATGTATGTGAC
AGCAACACGTTTTTTTTAATATTATTGCTGGCAGGTTGCTCCCAGGGGAT
TGCCGACGGCATCGCGCTGCTCGGGAGTGTCCACGTCCCCGCGGGCATCG
TCCTCGTTCACCGCACGACCGGTGGCGGCGACAGCAGCAGGGGGAGCAGC
GCCCAGAGCCTCCGCGCACAAGAGGAGACAACAACGGTTCAGCATGCAGT
TCGGTGGGAATTTTTTTGTCGCTTTTTTTCTATACGTATCTCCTTTTATG
TTTTGTGAAGTGTGTATCGTATTTGGCCGTCAGGTCTGCGACCTCGATTG
GTTGTCGAACATCCTTTTTCCGGCCAGATCAACGGGAAACGGTCGCTCCG
TTTTGGCATGTCGCTGTTTTTTTGTACGAGGGCTTCAAACGAAACCGGCA
ACCTATTAAGCTCGAAGCCCTCAAGTCGAAACGAATGCAGTTGGTTGGCG
CCCACTGTTATGAAGTTGGCAGCTACACATCATCCCCTTCGATTGTCAAT
ATTTTCGAACGGGTAGTCTTTCTGCGTTTCTATGCATGTTTTCTGAAGTA
AGACTATCAACCGCTGGTGCGGTTTGCGCGCAGTTGCTGCTGTACCGTGT
ATGACATAAGATAACACACCCCCTTGACCATTTTTCGAAGCTCGATTTTT
CAATTGCAGGAACAGTCACATCGTAGAAAACGACGGCGTTGAAACCGTCT
CGTCGAGAGCTTTTCGAAAATGTATCGTTTCGTTTATGCATCCTCTTCGT
TGTCGCATAATCGAGCTTTGAAGATCGGTCCAGGGGGTGTGTTATCTTGT
GTCGTATACGGTACGTTCTCGGCGTGTAGGCTGATAAGCGGTTGCATTTC
GAGTGGAGATTATTTGCACTCTACAATGAGTGAGGCCTAGTCACACTTCG
CCTTGTCATCCTTAGACTAGTGGTTTTGATTTCGGCTCCAATCAAATTTC
GTCCATGACACGGTTCCGCTGACCAGTCTAACGTGTTGATTGCGGTTCCT
TAACCAGTAGTCTACGCAGCAAAATTGATTAAGCAAACATATGAGATACA
TCATTCAATCCGTGCTTTGGGGTTATAGAGTTAGGGTCGGGGATAGGGTC
TGCGTGCCCCGTCCCTATTCTTTTTTCTAGATACTCATAAGATCCTGCGT
AGGCGGTCCTCCTCAACATGCACGCACTAAGACACGAGGTTGTATGACAC
CCATCTAGAAACACGTTAGTATAGGGTGCCGCGGACCAGTCTAAGCGGTT
GATTTCGGAACTTTCTATGATACACACGCCCGCACACACGAAGACAAAAC
GCACGTTGTATAGCACCCCCCCCATAGTAAGGCGTTTGTGTTGGGTTCCG
CTGACTAGTCTGTTGGCCTGAATTCCGCTTCCGTGTGCACCGTGGCAATC
GAACCTGCACTTCATGGACGAACGTCATAACCCCCCTCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNGTTTGCAGGAGAAGGAGGC
GGGCCAATCGAGAAGGGAACCATGCCGTCCTACGAAGAAGAGCAGGATAA
GGCGTTCTTCAACGTAAGCGGCATCACCCGGATACGGGGGGGGGGGGGCG
GGGGCGGGCGGATGAGTTGCCAAGGTTTTCTCCCTTGATTGCCACGCTTG
TTACGGTCTCCACCGTTCAAAATATAGTTGCCAGGTACCGTAGGTGATGG
AAGATACCACGCCCCCAAATCGACAGATTTTCGAAGCTCGATTGCTCCGC
AGCAGATGGTTTCGAAAACGGAGTCGTTGGAACCATCTCGTGGAGGCCTT
TCCGAGATCACGTCGATTTTGGATTGACGTCCTCTTCTTGGCGGAGTATT
ATTGTCGAGCTTTTGAGTATTCTCCGGTGGTTGGTATCTAGCGTCACCTA
CGTCAGGTCCGGCGTTCGGATGTCGACATTTCGAGACCCGCCCACAAACG
ATCTTTCGTGCATTACGATCTTTCGTGCACCTTTCTTGTACGGCAACCCT
CTTCGGTTATTTACCGCAACATGTTTCTCCCTGCTCTACCATCATGCGGA
CAAACGCACACGTAATTTTTTTTTTTTTTTGCGGCCACGTGATTTTTAGC
TTGCACGCTTTGCCGGCGAACGAAGAACCTGACTGGTTTGCCCTCAGCCT
TTCAAAACGAATGTTTATACAGCAGCAAAATAGTGGTCCCGGCGTGACAC
AAGATAAGAGCGATTCAAGTGGTCTCATCTCTTGGGCAGCGACGGGTGCC
CGGCATGCGGCCGGCCAAATTCCTCGGCACCACGATGATCCCTCGTTCAG
GAACCCCGACGGTATCGAACACGAAAGAAGCGTACATCGGTAGTCAGAAA
ACTCCGCCCTGCCTTGCGCCCACTTTCCCTAGTCCCGATGTCACATACCG
CCTCCCCCCCCCCCCCCCCTCGGCGGTGTTCGGCGTCTGCAGAGCGAGCT
GGACAACGCCCCAGCGACGGAAAAGGTGAAGGACCCCGTTGTGATCATCA
CTCTGGCCTGGATCCTGGGGATGTTCCTCCTCGCCACCGGGCTCATCCTC
AACGGCGTCAACTAACCGGTTGTCTCTTTGGCTCCATCACGCTGGCCTGG
ATGGTGGTGGGGGTGTTTTGTTCTTCCTGGCCGCGAGTCTCCTCCTCCTC
AACGTTGCTAACTACAAACATTTGACTTTTGTGTGGTTGTCTATAGACCC
AACGAGGGCGATCTTGGGAAGAAAACTAGAATGCGGCAGCAGACCATCTT
TGTATTAGAAGGGAACATGTTCATCGCTACGCAAGGCGTGTCGCTAACCG
AAAGGGTCGCCTGGACCCACCAGTGTACGTACAGGGTTCGGGGATCGGAC
TTCGGGGTGATCTCTCTCTCTTTCTATGCATCTTTTATCGGTGGTTGATG
TTGTTGTGACGAAGGAGCTTAATGGGGGCTGGTGGAGGTGTAGAAGTCAC
CGATCAGCAAGAGCTCACATAGTTAGGCTATTTGCGTTTTCGTGGGAGTT
GTATGTAGGTTAGAGGACGGGGGAAATGCAGCAGACGCGGCCTGGTTGGA
TGCTTCTGTCGGCCCAAGAAGGAAGTACACCATGTAGCCTTGCATTTTTC
CGTTCTATTTTTTTTAAGATATAAAGCTGGGAACACAATTTTTGTTTCGG
TCACTTGTTCTAGCCCTTCTGCTTTTCGTAGCGAGGAATGCCCGGGTTTC
GCTTTTGTGGCGTGCCCACAATGAAGAAACGTTTGGTGGAGCACCGTGTC
GGACCACACAAAGTCACGTTGCATTTTTTTTGTTTGCCCTCCATATCCGA
AAGTGCTGTAGGATTTCTCGAGGTAAGAGCCGCTCCAGTAGTGGGCTCAC
CGGCGGGATTCCTCGTACACGCAGAAGGTTTGCATGGGAGATGAATTTAT
GCCTGAATTTTCTGGTGGTGGCAAAATATGGGAACGAACCTAACTACGAT
GAGTGATTCTTGGAATAGGTGGTGGCTGCGTGCGTAGGCTAAGCTCTTTG
TCTGAAAGTGGCACGTTGCATGGTCGGGGTGTGGAGAAGTCGCTCTTTCT
AGGGACGGTCGCCGTCTGCACGACGGCTTCATGGCTCCAGCATGTTTCTC
TTGCGGGCAAGATTTCAGGGGCGGGTGGTCATGTCGTACTTAAGGTTAGG
GTTGGATGTCGCGGGAGCTTGCCGAAGATAGACAAAACAAGCGTGAACGA
GAACGCAGCCTGACTGCTGAGAATGGTGCAGTTGGTGAAGTGATGATGAT
TTGGTGAGCATTCTGCACCTGGCTGAGCTGGAGAGCGATCCATTCGCACA
CTTTCGCCCCTCTGCCGCAAATGCTGGGCGGTTTGGGAACGAGTTCTCAA
AAGTGGCATCGTGGAAAAATCAGCGGTTGTCTTCTCACATTGTGATTGTC
GGTTGCT

Coding sequence (CDS) from alignment at Scaffold_589:119114..125670+

>EsuBft1311_4a-0001 ID=EsuBft1311_4a-0001|Name=EsuBft1311_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=429bp|location=Sequence derived from alignment at Scaffold_589:119114..125670+ (Ectocarpus subulatus male Bft15b)
ATGCAGTACTCCCTCGTTTTCCTGGCCGTTGTGGCGATGCTGGGTTCGGT
GCTTGGATTCCAGGTTGCTCCCAGGGGATTGCCGACGGCATCGCGCTGCT
CGGGAGTGTCCACGTCCCCGCGGGCATCGTCCTCGTTCACCGCACGACCG
GTGGCGGCGACAGCAGCAGGGGGAGCAGCGCCCAGAGCCTCCGCGCACAA
GAGGAGACAACAACGGTTCAGCATGCAGTTCGGAGAAGGAGGCGGGCCAA
TCGAGAAGGGAACCATGCCGTCCTACGAAGAAGAGCAGGATAAGGCGTTC
TTCAACAGCGAGCTGGACAACGCCCCAGCGACGGAAAAGGTGAAGGACCC
CGTTGTGATCATCACTCTGGCCTGGATCCTGGGGATGTTCCTCCTCGCCA
CCGGGCTCATCCTCAACGGCGTCAACTAA