EsuBft1311_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1311_2a-0001
Unique Name	EsuBft1311_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_589	contig	Scaffold_589:89521..91768 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LBY3
ProteomeId	EsuBft1311_2
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	TMhelix
Protein domains	IPR018629
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	TRANSMEMBRANE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	224
Hectar predicted targeting category	signal peptide
Evalue	5.02e-64
EggNOG OGs	COG4886@1\|root,2R960@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	regulation of response to stimulus
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1311_2a	EsuBft1311_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_589 89521..91768 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1311_2a-0001-exon	EsuBft1311_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_589 89521..91768 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1311_2a-0001-cds	EsuBft1311_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_589 89521..91212 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1311_2a-0001-exon	agat-three_prime_utr-2898	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_589 91213..91768 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1311_2a-0001	EsuBft1311_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_589 89521..91212 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_589:89521..91768+
coding sequence from alignment at Scaffold_589:89521..91768+

spliced messenger RNA

>EsuBft1311_2a-0001 ID=EsuBft1311_2a-0001|Name=EsuBft1311_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2248bp|location=Sequence derived from alignment at Scaffold_589:89521..91768+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGTGTCCTCGACCCTCATGGCTTGTGGTGAAATCGATTGGGTGTT
AATATTTTTCGTGCTTGTCGCTCCCCTCGTGACAGGCGAAGTGCCCAAGT
CTCTGCTGGACCACCCTAATCGGAAAGGGGGGGCTTTTCAGTTTCATGTT
ACGGAAGACGGCGCCCCCGTGCCTGGGTACAAGTCGTGGAAAAGTGTCGG
CATCCAGTTGGTTCTCGGATACGCTGACGTTGGTACGGATGTGGATGCGG
TGGTGTCCTATTACCAGGCCGATCATATGTGGTGGTTTGCCTTGGGGATG
ATATTCATCATTGGACCTGCCTTGTTCGCTGCAATCGTCTTGCTCCGCCG
TGAACACTGGTTGAGGCGGGTCCTAGTTGCTCTGCAGTTGGGGATGCTGT
TTGGGGCATTGGTCTCTTGGGGTACTTCATCATACTCCCCTGTACTGGCA
AGCTTGCGGGTGATGGAGCCGCTGTATGAGTCGGTCCCGCAGCTGATGTT
ACAACTGTATGGCCTGCTACTTGAGTGGGATAATGACGGAACTATGTGGC
TGTCAAGGCGGCTCTTATCGATCTTGTTCTCCTGCTTTTCTCTAGCCTAT
GCCACAACGGGTTTGGTGGCGGAGCAGGCGTTGTCTCGACTTGCTCCTAC
CGCCGACGCTGCGAGTGCGAGTTGTCCCGGCCTGACAGGGCTTGTTTTCG
GGGCCGTCCCAGCTAACAGCAGCGTTGCAGTATACAGATCCAGGTGGAAT
TCCCAGAAGTTTGTATGGGCTTTCTTGTTTTATCAAGTGCTTGAGATAGG
GGCTAAGTTCATTTCACTTGGTCTCCTGGCGTTGGTGTGGCGGGCGTACT
TCTTCCTCGCGCTGTTTTGGCTTTGGGGTTCTCGTGCGTATGTATTGCGT
CGCTTGATTGCTGGGGAACACAGCCTTCGCGTTCGGTCCCAATTTCGACT
TGTGGGCATGCCTTTCATGGACTCTGTGATGGATGTCTTACAAACATACG
ACGTAGGGTGTGCACTCACAACGGTGGAGTTCGTGTTTTGCTTGACGATT
GGCAACATGTTTTACACCGATGAGGGGGGTCAGTTGCCTACCGATGTCGG
TCGTGTGTGGACGTACGTGGCTGCGGTGTGTATGGTGGGGAAGTTGTGTT
TGGGCTACCTGATCGTGAGGCCGTTCAAGAGAGTCGTTCGCTTCGGCACT
GAGCAAGAGGAGCAGACCTCAGGTCGACAGCACGGTGGCGGTGATGTTGG
CGGCAACGGAGATGTTGACCCTGGTGGGAGTTCTCGTGCTGATGATGAAG
GAATGCTCGGGGACACGAGAGCGCGGACAGGTTACGGTGACGAGGGCAGT
AGAGGTGTAGTCGCCCTTGCCAGCCGGGGCGCACGCGTACACGAAGGCAT
GTCGCTTTCCAGGACGGTGAATCGGCGAACACTGTCGTGGACTGCTCTCG
AGGACAGCGAGGAGGCGTCACGTGTTGGTGTTGGACTAGATAGACAGGGT
GAGCCGGGTAGCGCAGGCTCTTCGGCAGGGCTGGAGATGATGACAGGAAT
GGAAGAGGGGAAGGTGACGAGCGAAGTAGCACCTTCGGAGGGAACAGACC
TTGAGCCTGTTCTGCATATCTTGACCCACGTGGCGACGGGTCGGCTAGTT
AGTGATGACGCCGAGGTCCAGGGCGAGGAAGATTCTGCGTAGTGCCTGCA
GCGCATTTTCGGTACGCTGGGCATTTATGTGTCACTACTTGGGTAGAAGA
ATAGCATTCCGTTCCGGCAGAAATGCATGGATTAGGTGAATGTGACGTTG
AGCACTCGTCTTCATGAGAAGCGCGTCCAAGATTTTGTGTTTGCTCCGGT
GTCGTGATGTACTTTGGTTTGTTTTGGAAATTTCAGTTTGGATTTGGCAG
GAAATGCAAATCGCGATCACTGCCACTCCATTCTGCGCCTACACGTGAGT
CGAGTAGTTGGCGAGGAAGACGGTGCTGAAGGGAAATGATAGCGGGCTCA
GGGTAGTGAATGCCACTCCGCCCTTCCCACGCAAGTCTTTCAAGAATTTC
TGTAGTCCCAATGATGCGCCTCTCTTGGCTTCGACAGTTGGATATGCATG
TGGTTGTGCCCTGACGCTGCCCGGCCGGTGAAAACTCGGCATGCCGGAGC
TGGTTTTGGTTCTGTTGTACCTTTGTGCTTATGCCACCAATGCTTCGGAC
AAACGACACTATATTCTTGAGCAGAGAACACATTTGAGAAACAGCCCC

protein sequence of EsuBft1311_2a-0001

>EsuBft1311_2 ID=EsuBft1311_2|Name=EsuBft1311_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=563bp
MTVSSTLMACGEIDWVLIFFVLVAPLVTGEVPKSLLDHPNRKGGAFQFHV
TEDGAPVPGYKSWKSVGIQLVLGYADVGTDVDAVVSYYQADHMWWFALGM
IFIIGPALFAAIVLLRREHWLRRVLVALQLGMLFGALVSWGTSSYSPVLA
SLRVMEPLYESVPQLMLQLYGLLLEWDNDGTMWLSRRLLSILFSCFSLAY
ATTGLVAEQALSRLAPTADAASASCPGLTGLVFGAVPANSSVAVYRSRWN
SQKFVWAFLFYQVLEIGAKFISLGLLALVWRAYFFLALFWLWGSRAYVLR
RLIAGEHSLRVRSQFRLVGMPFMDSVMDVLQTYDVGCALTTVEFVFCLTI
GNMFYTDEGGQLPTDVGRVWTYVAAVCMVGKLCLGYLIVRPFKRVVRFGT
EQEEQTSGRQHGGGDVGGNGDVDPGGSSRADDEGMLGDTRARTGYGDEGS
RGVVALASRGARVHEGMSLSRTVNRRTLSWTALEDSEEASRVGVGLDRQG
EPGSAGSSAGLEMMTGMEEGKVTSEVAPSEGTDLEPVLHILTHVATGRLV
SDDAEVQGEEDSA

mRNA from alignment at Scaffold_589:89521..91768+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1311_2a-0001 ID=EsuBft1311_2a-0001|Name=EsuBft1311_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2248bp|location=Sequence derived from alignment at Scaffold_589:89521..91768+ (Ectocarpus subulatus male Bft15b)
ATGACTGTGTCCTCGACCCTCATGGCTTGTGGTGAAATCGATTGGGTGTT
AATATTTTTCGTGCTTGTCGCTCCCCTCGTGACAGGCGAAGTGCCCAAGT
CTCTGCTGGACCACCCTAATCGGAAAGGGGGGGCTTTTCAGTTTCATGTT
ACGGAAGACGGCGCCCCCGTGCCTGGGTACAAGTCGTGGAAAAGTGTCGG
CATCCAGTTGGTTCTCGGATACGCTGACGTTGGTACGGATGTGGATGCGG
TGGTGTCCTATTACCAGGCCGATCATATGTGGTGGTTTGCCTTGGGGATG
ATATTCATCATTGGACCTGCCTTGTTCGCTGCAATCGTCTTGCTCCGCCG
TGAACACTGGTTGAGGCGGGTCCTAGTTGCTCTGCAGTTGGGGATGCTGT
TTGGGGCATTGGTCTCTTGGGGTACTTCATCATACTCCCCTGTACTGGCA
AGCTTGCGGGTGATGGAGCCGCTGTATGAGTCGGTCCCGCAGCTGATGTT
ACAACTGTATGGCCTGCTACTTGAGTGGGATAATGACGGAACTATGTGGC
TGTCAAGGCGGCTCTTATCGATCTTGTTCTCCTGCTTTTCTCTAGCCTAT
GCCACAACGGGTTTGGTGGCGGAGCAGGCGTTGTCTCGACTTGCTCCTAC
CGCCGACGCTGCGAGTGCGAGTTGTCCCGGCCTGACAGGGCTTGTTTTCG
GGGCCGTCCCAGCTAACAGCAGCGTTGCAGTATACAGATCCAGGTGGAAT
TCCCAGAAGTTTGTATGGGCTTTCTTGTTTTATCAAGTGCTTGAGATAGG
GGCTAAGTTCATTTCACTTGGTCTCCTGGCGTTGGTGTGGCGGGCGTACT
TCTTCCTCGCGCTGTTTTGGCTTTGGGGTTCTCGTGCGTATGTATTGCGT
CGCTTGATTGCTGGGGAACACAGCCTTCGCGTTCGGTCCCAATTTCGACT
TGTGGGCATGCCTTTCATGGACTCTGTGATGGATGTCTTACAAACATACG
ACGTAGGGTGTGCACTCACAACGGTGGAGTTCGTGTTTTGCTTGACGATT
GGCAACATGTTTTACACCGATGAGGGGGGTCAGTTGCCTACCGATGTCGG
TCGTGTGTGGACGTACGTGGCTGCGGTGTGTATGGTGGGGAAGTTGTGTT
TGGGCTACCTGATCGTGAGGCCGTTCAAGAGAGTCGTTCGCTTCGGCACT
GAGCAAGAGGAGCAGACCTCAGGTCGACAGCACGGTGGCGGTGATGTTGG
CGGCAACGGAGATGTTGACCCTGGTGGGAGTTCTCGTGCTGATGATGAAG
GAATGCTCGGGGACACGAGAGCGCGGACAGGTTACGGTGACGAGGGCAGT
AGAGGTGTAGTCGCCCTTGCCAGCCGGGGCGCACGCGTACACGAAGGCAT
GTCGCTTTCCAGGACGGTGAATCGGCGAACACTGTCGTGGACTGCTCTCG
AGGACAGCGAGGAGGCGTCACGTGTTGGTGTTGGACTAGATAGACAGGGT
GAGCCGGGTAGCGCAGGCTCTTCGGCAGGGCTGGAGATGATGACAGGAAT
GGAAGAGGGGAAGGTGACGAGCGAAGTAGCACCTTCGGAGGGAACAGACC
TTGAGCCTGTTCTGCATATCTTGACCCACGTGGCGACGGGTCGGCTAGTT
AGTGATGACGCCGAGGTCCAGGGCGAGGAAGATTCTGCGTAGTGCCTGCA
GCGCATTTTCGGTACGCTGGGCATTTATGTGTCACTACTTGGGTAGAAGA
ATAGCATTCCGTTCCGGCAGAAATGCATGGATTAGGTGAATGTGACGTTG
AGCACTCGTCTTCATGAGAAGCGCGTCCAAGATTTTGTGTTTGCTCCGGT
GTCGTGATGTACTTTGGTTTGTTTTGGAAATTTCAGTTTGGATTTGGCAG
GAAATGCAAATCGCGATCACTGCCACTCCATTCTGCGCCTACACGTGAGT
CGAGTAGTTGGCGAGGAAGACGGTGCTGAAGGGAAATGATAGCGGGCTCA
GGGTAGTGAATGCCACTCCGCCCTTCCCACGCAAGTCTTTCAAGAATTTC
TGTAGTCCCAATGATGCGCCTCTCTTGGCTTCGACAGTTGGATATGCATG
TGGTTGTGCCCTGACGCTGCCCGGCCGGTGAAAACTCGGCATGCCGGAGC
TGGTTTTGGTTCTGTTGTACCTTTGTGCTTATGCCACCAATGCTTCGGAC
AAACGACACTATATTCTTGAGCAGAGAACACATTTGAGAAACAGCCCC

Coding sequence (CDS) from alignment at Scaffold_589:89521..91768+

>EsuBft1311_2a-0001 ID=EsuBft1311_2a-0001|Name=EsuBft1311_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1692bp|location=Sequence derived from alignment at Scaffold_589:89521..91768+ (Ectocarpus subulatus male Bft15b)
ATGACTGTGTCCTCGACCCTCATGGCTTGTGGTGAAATCGATTGGGTGTT
AATATTTTTCGTGCTTGTCGCTCCCCTCGTGACAGGCGAAGTGCCCAAGT
CTCTGCTGGACCACCCTAATCGGAAAGGGGGGGCTTTTCAGTTTCATGTT
ACGGAAGACGGCGCCCCCGTGCCTGGGTACAAGTCGTGGAAAAGTGTCGG
CATCCAGTTGGTTCTCGGATACGCTGACGTTGGTACGGATGTGGATGCGG
TGGTGTCCTATTACCAGGCCGATCATATGTGGTGGTTTGCCTTGGGGATG
ATATTCATCATTGGACCTGCCTTGTTCGCTGCAATCGTCTTGCTCCGCCG
TGAACACTGGTTGAGGCGGGTCCTAGTTGCTCTGCAGTTGGGGATGCTGT
TTGGGGCATTGGTCTCTTGGGGTACTTCATCATACTCCCCTGTACTGGCA
AGCTTGCGGGTGATGGAGCCGCTGTATGAGTCGGTCCCGCAGCTGATGTT
ACAACTGTATGGCCTGCTACTTGAGTGGGATAATGACGGAACTATGTGGC
TGTCAAGGCGGCTCTTATCGATCTTGTTCTCCTGCTTTTCTCTAGCCTAT
GCCACAACGGGTTTGGTGGCGGAGCAGGCGTTGTCTCGACTTGCTCCTAC
CGCCGACGCTGCGAGTGCGAGTTGTCCCGGCCTGACAGGGCTTGTTTTCG
GGGCCGTCCCAGCTAACAGCAGCGTTGCAGTATACAGATCCAGGTGGAAT
TCCCAGAAGTTTGTATGGGCTTTCTTGTTTTATCAAGTGCTTGAGATAGG
GGCTAAGTTCATTTCACTTGGTCTCCTGGCGTTGGTGTGGCGGGCGTACT
TCTTCCTCGCGCTGTTTTGGCTTTGGGGTTCTCGTGCGTATGTATTGCGT
CGCTTGATTGCTGGGGAACACAGCCTTCGCGTTCGGTCCCAATTTCGACT
TGTGGGCATGCCTTTCATGGACTCTGTGATGGATGTCTTACAAACATACG
ACGTAGGGTGTGCACTCACAACGGTGGAGTTCGTGTTTTGCTTGACGATT
GGCAACATGTTTTACACCGATGAGGGGGGTCAGTTGCCTACCGATGTCGG
TCGTGTGTGGACGTACGTGGCTGCGGTGTGTATGGTGGGGAAGTTGTGTT
TGGGCTACCTGATCGTGAGGCCGTTCAAGAGAGTCGTTCGCTTCGGCACT
GAGCAAGAGGAGCAGACCTCAGGTCGACAGCACGGTGGCGGTGATGTTGG
CGGCAACGGAGATGTTGACCCTGGTGGGAGTTCTCGTGCTGATGATGAAG
GAATGCTCGGGGACACGAGAGCGCGGACAGGTTACGGTGACGAGGGCAGT
AGAGGTGTAGTCGCCCTTGCCAGCCGGGGCGCACGCGTACACGAAGGCAT
GTCGCTTTCCAGGACGGTGAATCGGCGAACACTGTCGTGGACTGCTCTCG
AGGACAGCGAGGAGGCGTCACGTGTTGGTGTTGGACTAGATAGACAGGGT
GAGCCGGGTAGCGCAGGCTCTTCGGCAGGGCTGGAGATGATGACAGGAAT
GGAAGAGGGGAAGGTGACGAGCGAAGTAGCACCTTCGGAGGGAACAGACC
TTGAGCCTGTTCTGCATATCTTGACCCACGTGGCGACGGGTCGGCTAGTT
AGTGATGACGCCGAGGTCCAGGGCGAGGAAGATTCTGCGTAG