Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 3750.XP_008337255.1 |
| ProteomeId | EsuBft993_3 |
| Protein domains | IPR001584 |
| Protein domains | PTHR11439 |
| Protein domains | IPR012337 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 35493|Streptophyta |
| Length | 1819 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.83e-16 |
| EggNOG OGs | COG2801@1|root,KOG4197@1|root,KOG0017@2759|Eukaryota,KOG4197@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Mitochondrial protein |
| COG category | O |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
| GO | 0003824 |
| GO | 0015074 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft993_3a-0001 ID=EsuBft993_3a-0001|Name=EsuBft993_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1819bp|location=Sequence derived from alignment at Scaffold_589:77650..79468- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GGTGCTTCCCCGTTTTCGGTAGGAAATTCCACGCCGACCATTGACAATAA
TTCGTTCCATGCCTCCACCGGCCATGTAAATGAACTTTTGATGCATGAAA
CGGCCAAGCAGCAGGGCGTACGACTGGTGAGGGAGATGCAGCCATGTGTA
GGCTGCGTGGAGGCGAAGGGCAGGCGGGCACCGGTGCCGCGGCATGGCAC
CCGCTCGGCGGTACCGTTCGGCAAAGTCCACATTGACCTCACGGACCCGC
TCTCTGACGCGCTGGACGGCTCCCGGTACCTGATCATGTTCGTGGACATC
GCATCGCGGTGGCAACGGGGGTACGGGATGCGGGCCAAGAGCGACACCCT
GAAGTTCGTGCAGCGGTTCCTCGCCGGCATGAACTGCATGGGCACTCCAG
GGTGTTTCCGCATGGACAACGGCGACGAGTTCGCCGGCTCCGCCTTCACC
TCGTTCTGCGACGCTGCTGACATTCGGCGCGAGTACACCTCGCCCGACAC
CCCCAAGCAAAACACGGTGGTTGAGAGCGCCATATGGCGCGCCATGAAGG
GGGGCCACGCCGCGCGCCGCCACATCCTCGCCATGGGCCACGTCGACCTC
TCCTCCATCCCCAACGTCGGCGTCAACGGACATCGCCTGTGGCTCGCGTC
GGCGCTGTGGGCATTCGCCTGCTTCAACCGCTCCGCGACGAAGGCCAACC
TGGGCTGGATGTCGCCGTTTGAGGCGTTCTTCGGCCGGAAGCCGCCCCTC
ACCGTCGTCCCTTTTTTCCAGGAGGGGATGATGCGCGTGAAGCGGGCCAC
GAAGGCGGACGTCCAATCCGCGCGGTGCTTCTACCTGCACGGCGCCAACA
ACCACTCAACGTCTACCGCCGTCGTTCTGCGCGCTGACACCGGCTGCCTC
GCCCTCACCAACAACGTGTGGGTCAACCGCCGGGCAGGGGCGCCGGCGCC
GGTGCCGGACATCGGGGGGGTTTCTTCGGTCACCGCGGCGCCCTCGCCGG
CCACCGCCGTACCACCGCTCTCCACCACCGTCTTGGTCTGTTAGCGATGA
TGGACAAGGACTCCCTCATCTCGTCGCTCGCCACTATTTGTTCATGACGG
GTTTGCCGGCTTCTTCACGTTGCCGTCCATGTGGGCCAATCGGAGGGAGC
TCGCCTNTCTACCGTCTTGGTCTGTTAGCGATGATGGACAAGGACTCCCT
CATCTCGTCGCTCGCCACTATTTGTTCATGACGGGTTTGCCGGCTTCTTC
ACGTTGCCGTCCATGTGGGNTTCATACGATGTATCAGTATGTAAATAACG
TATAATGCGACAAGCACTGTCGCTGGGACACCCACATTCTCGACGCCAGC
ACGAGATCCTTTACTCCTGCTTGAGCGATGAACAAAGTTCAACACAAGAC
GCTCACATACATGACCGCTGTTGCTTTGCTCTTGAAACCACGGCGATGAA
GCTCGCTTTCGGATTTGCTCAGAATCGAGTCCCACCCTGCATCTCCATCA
CCTACCTCAAGGAACGTGAAGCCATTCTCGAGATATATCGGATTATGGTT
TGCCATTTCATCGCCTTCTTCTTCTGCCGTGGAAAAGGGGAGCATGTCAT
GTTTGTGCGCGGCCCGCATGCACAAGAAAACGCGCGGCAGAATGAGCCAT
CGCGAGACATGATGACCGCCGTGAACTCCTTCAGCTTACAACCGACCGTG
GTGATGCGATCTCCAGGGTTGTCTGTTGACATCCGGGCCTACCCATTCAC
CCACTCTTGTCTTGTGCCTGACGTTGTTGTGACCACACTGCGCAATGTCA
AACGCTACGTCACGATGGG back to topprotein sequence of EsuBft993_3a-0001 >EsuBft993_3 ID=EsuBft993_3|Name=EsuBft993_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=317bp
MHETAKQQGVRLVREMQPCVGCVEAKGRRAPVPRHGTRSAVPFGKVHIDL
TDPLSDALDGSRYLIMFVDIASRWQRGYGMRAKSDTLKFVQRFLAGMNCM
GTPGCFRMDNGDEFAGSAFTSFCDAADIRREYTSPDTPKQNTVVESAIWR
AMKGGHAARRHILAMGHVDLSSIPNVGVNGHRLWLASALWAFACFNRSAT
KANLGWMSPFEAFFGRKPPLTVVPFFQEGMMRVKRATKADVQSARCFYLH
GANNHSTSTAVVLRADTGCLALTNNVWVNRRAGAPAPVPDIGGVSSVTAA
PSPATAVPPLSTTVLVC back to topmRNA from alignment at Scaffold_589:77650..79468- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft993_3a-0001 ID=EsuBft993_3a-0001|Name=EsuBft993_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1819bp|location=Sequence derived from alignment at Scaffold_589:77650..79468- (Ectocarpus subulatus male Bft15b)
GGTGCTTCCCCGTTTTCGGTAGGAAATTCCACGCCGACCATTGACAATAA
TTCGTTCCATGCCTCCACCGGCCATGTAAATGAACTTTTGATGCATGAAA
CGGCCAAGCAGCAGGGCGTACGACTGGTGAGGGAGATGCAGCCATGTGTA
GGCTGCGTGGAGGCGAAGGGCAGGCGGGCACCGGTGCCGCGGCATGGCAC
CCGCTCGGCGGTACCGTTCGGCAAAGTCCACATTGACCTCACGGACCCGC
TCTCTGACGCGCTGGACGGCTCCCGGTACCTGATCATGTTCGTGGACATC
GCATCGCGGTGGCAACGGGGGTACGGGATGCGGGCCAAGAGCGACACCCT
GAAGTTCGTGCAGCGGTTCCTCGCCGGCATGAACTGCATGGGCACTCCAG
GGTGTTTCCGCATGGACAACGGCGACGAGTTCGCCGGCTCCGCCTTCACC
TCGTTCTGCGACGCTGCTGACATTCGGCGCGAGTACACCTCGCCCGACAC
CCCCAAGCAAAACACGGTGGTTGAGAGCGCCATATGGCGCGCCATGAAGG
GGGGCCACGCCGCGCGCCGCCACATCCTCGCCATGGGCCACGTCGACCTC
TCCTCCATCCCCAACGTCGGCGTCAACGGACATCGCCTGTGGCTCGCGTC
GGCGCTGTGGGCATTCGCCTGCTTCAACCGCTCCGCGACGAAGGCCAACC
TGGGCTGGATGTCGCCGTTTGAGGCGTTCTTCGGCCGGAAGCCGCCCCTC
ACCGTCGTCCCTTTTTTCCAGGAGGGGATGATGCGCGTGAAGCGGGCCAC
GAAGGCGGACGTCCAATCCGCGCGGTGCTTCTACCTGCACGGCGCCAACA
ACCACTCAACGTCTACCGCCGTCGTTCTGCGCGCTGACACCGGCTGCCTC
GCCCTCACCAACAACGTGTGGGTCAACCGCCGGGCAGGGGCGCCGGCGCC
GGTGCCGGACATCGGGGGGGTTTCTTCGGTCACCGCGGCGCCCTCGCCGG
CCACCGCCGTACCACCGCTCTCCACCACCGTCTTGGTCTGTTAGCGATGA
TGGACAAGGACTCCCTCATCTCGTCGCTCGCCACTATTTGTTCATGACGG
GTTTGCCGGCTTCTTCACGTTGCCGTCCATGTGGGCCAATCGGAGGGAGC
TCGCCTNTCTACCGTCTTGGTCTGTTAGCGATGATGGACAAGGACTCCCT
CATCTCGTCGCTCGCCACTATTTGTTCATGACGGGTTTGCCGGCTTCTTC
ACGTTGCCGTCCATGTGGGNTTCATACGATGTATCAGTATGTAAATAACG
TATAATGCGACAAGCACTGTCGCTGGGACACCCACATTCTCGACGCCAGC
ACGAGATCCTTTACTCCTGCTTGAGCGATGAACAAAGTTCAACACAAGAC
GCTCACATACATGACCGCTGTTGCTTTGCTCTTGAAACCACGGCGATGAA
GCTCGCTTTCGGATTTGCTCAGAATCGAGTCCCACCCTGCATCTCCATCA
CCTACCTCAAGGAACGTGAAGCCATTCTCGAGATATATCGGATTATGGTT
TGCCATTTCATCGCCTTCTTCTTCTGCCGTGGAAAAGGGGAGCATGTCAT
GTTTGTGCGCGGCCCGCATGCACAAGAAAACGCGCGGCAGAATGAGCCAT
CGCGAGACATGATGACCGCCGTGAACTCCTTCAGCTTACAACCGACCGTG
GTGATGCGATCTCCAGGGTTGTCTGTTGACATCCGGGCCTACCCATTCAC
CCACTCTTGTCTTGTGCCTGACGTTGTTGTGACCACACTGCGCAATGTCA
AACGCTACGTCACGATGGG back to topCoding sequence (CDS) from alignment at Scaffold_589:77650..79468- >EsuBft993_3a-0001 ID=EsuBft993_3a-0001|Name=EsuBft993_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=954bp|location=Sequence derived from alignment at Scaffold_589:77650..79468- (Ectocarpus subulatus male Bft15b)
ATGCATGAAACGGCCAAGCAGCAGGGCGTACGACTGGTGAGGGAGATGCA
GCCATGTGTAGGCTGCGTGGAGGCGAAGGGCAGGCGGGCACCGGTGCCGC
GGCATGGCACCCGCTCGGCGGTACCGTTCGGCAAAGTCCACATTGACCTC
ACGGACCCGCTCTCTGACGCGCTGGACGGCTCCCGGTACCTGATCATGTT
CGTGGACATCGCATCGCGGTGGCAACGGGGGTACGGGATGCGGGCCAAGA
GCGACACCCTGAAGTTCGTGCAGCGGTTCCTCGCCGGCATGAACTGCATG
GGCACTCCAGGGTGTTTCCGCATGGACAACGGCGACGAGTTCGCCGGCTC
CGCCTTCACCTCGTTCTGCGACGCTGCTGACATTCGGCGCGAGTACACCT
CGCCCGACACCCCCAAGCAAAACACGGTGGTTGAGAGCGCCATATGGCGC
GCCATGAAGGGGGGCCACGCCGCGCGCCGCCACATCCTCGCCATGGGCCA
CGTCGACCTCTCCTCCATCCCCAACGTCGGCGTCAACGGACATCGCCTGT
GGCTCGCGTCGGCGCTGTGGGCATTCGCCTGCTTCAACCGCTCCGCGACG
AAGGCCAACCTGGGCTGGATGTCGCCGTTTGAGGCGTTCTTCGGCCGGAA
GCCGCCCCTCACCGTCGTCCCTTTTTTCCAGGAGGGGATGATGCGCGTGA
AGCGGGCCACGAAGGCGGACGTCCAATCCGCGCGGTGCTTCTACCTGCAC
GGCGCCAACAACCACTCAACGTCTACCGCCGTCGTTCTGCGCGCTGACAC
CGGCTGCCTCGCCCTCACCAACAACGTGTGGGTCAACCGCCGGGCAGGGG
CGCCGGCGCCGGTGCCGGACATCGGGGGGGTTTCTTCGGTCACCGCGGCG
CCCTCGCCGGCCACCGCCGTACCACCGCTCTCCACCACCGTCTTGGTCTG
TTAG back to top
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