EsuBft993_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft993_4a	EsuBft993_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_589 71484..75160 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft993_4a-0001	EsuBft993_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_589 71852..73516 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft993_4a-0001-exon	agat-exon-45682	Ectocarpus subulatus male Bft15b	exon	Scaffold_589 71484..74179 +
EsuBft993_4a-0001-exon	agat-exon-45684	Ectocarpus subulatus male Bft15b	exon	Scaffold_589 74650..74759 +
EsuBft993_4a-0001-exon	agat-exon-45683	Ectocarpus subulatus male Bft15b	exon	Scaffold_589 74848..74897 +
EsuBft993_4a-0001-exon	EsuBft993_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_589 75002..75160 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft993_4a-0001-exon	agat-five_prime_utr-15567	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_589 71484..71851 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft993_4a-0001-cds	EsuBft993_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_589 71852..73516 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft993_4a-0001-exon	agat-three_prime_utr-23865	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_589 73517..74179 +
EsuBft993_4a-0001-exon	agat-three_prime_utr-23866	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_589 74650..74759 +
EsuBft993_4a-0001-exon	agat-three_prime_utr-23867	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_589 74848..74897 +
EsuBft993_4a-0001-exon	agat-three_prime_utr-23868	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_589 75002..75160 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_589:71484..75160+
coding sequence from alignment at Scaffold_589:71484..75160+

spliced messenger RNA

>EsuBft993_4a-0001 ID=EsuBft993_4a-0001|Name=EsuBft993_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3015bp|location=Sequence derived from alignment at Scaffold_589:71484..75160+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTCTGTTGTAGAGAGCCTGAGTTTCAACTTGTTCTCAACGCATGCTGTT
TCTCTGAAGCAACCAATCCTCTACGACGAACGTGGTGCAACCCTACAAAA
TGGGCTGCTCTTTGCTAGAGAGGAAAAACCGTCTGCATCGTATGCCATGC
GGTTGCCGTACGACCCATCTGCGATTATTGTAGACCCTGCGGCTTTGCCC
GTATTCGTGACTGCCCCCGATTCCGCCCCCGCCGTTGGCTCCGCGCGATC
CTGAGATCACAACCGCTTCCACCGCTCCCTTGCCCACGCTTGCGAGCCTC
TTTTGAGAGAAACTGCCCAGCAGAGAGGCATCGTGCTCACCGGCAAGCTG
GAACCGTGCACGGACTGCATGAAGGCGAAGGGCAGGCGAGCGTCGGTGCC
GCGGGGGCCGGGAGCGAGGGCGTCCAAGCCTCTCGGGCGTGTTCACCTGG
ACCTGTGTGGACCGCTGGTGCCTTCCCTGGGCGGCAACCTCTACCTGTTC
GTCGCCGTGGACAGCGCCTCGCGGTGGAACAAAGTCTACGGCCTCCGGCG
GAAGTCCGACGCGCTGGCGGCAACGAAAAGGCTGCTGGCGGACGTGGGGC
GGTACGACATCGGGCGCATCGAGTGTTTCCGCGTCGACAACGGCACCGAG
TGGACCCGCGGCGATTTCCGGCGCTTCTGCGACGACAACGGCATCGGCGT
CGAGTTCACCCCGCCTGGCGTCCCGCAGTACAACGGCGTCGTCGAGAGCG
CCATCTGGCGCATCATGAAGGCCGGCATGGCCGCCCGCCGCAGCGCTGGC
CGTGTGTTCCACGTCGACTTCGCCTCCATCCCCGGCCTCGACGAGCGTGG
TGACCGTCTTTGGATGGAATCGGCGAAGTGGGCCGCCGACGCTCTCAACC
AGTCGGCGACCAAGGCCAACCCCGGGCGGCGCTCGCCGCACGAGATGTTC
ACCGGCGAGCAGGGGCCGTGCCGCGTGCTGCCGTTCTTCCAGCCCGGCTT
CATGCGCGAGGACCGCCGCACCAAGCTCGACGACCAGGCCACCCTCTGTT
ACTACCTGAACGGCGGCGACAACCACCCGAGCGGCACCGTCAAGGTCCTC
AAGGCGTCCACCGGCCGCGTCGTCTACACCAACAACGTGTCGTGGGTGAC
GTCGGCGCCAGCCGGCGAGGGGGGTTCCGCTGGTATCACCGCTGCGCCGA
CACCCCCCCCGTTCACGCCGCCGGTCGTCTCGATCAACTTTGGCCCAGCA
CCGACGCCTTCGACCGCCACACCGCCACCGCCAGCGCCCACGCCGTCGCC
CGCTCCCGCTCCTGCCTCGCCCCCTGCCGCAACGCCGCCGCCAGCGACCA
CGCCGCCGCCCGCTCCCACGACTTCACAGCCGCCCTCTGCCACTTCGCCG
TCACCGTCGGCGACCCCCGCTCCTGGCAATCCGTCCTCTGCCTCTCCGCC
GTCACCGTCGGCGACCCCCGATCCATACCAGCCGCCGCCGCCGCCGGACC
CCGCGATGCCCCCGCTTACGGCTCACGCCATGCGGCAGCTTCGCCCGGGT
ACAAAGGCCGAGGGTATGACAGACCCGCGGCTGCCAAGCCGTACGAGATC
GGGCACGAGGCACAGCACAGGACTTGTCTCGATGCTAGACAGGAACACTC
TGGTGTCGATGCTGGAGGCTCGGAGCGCGGTGGATAAGGAGCGCAGGGAG
CTGGGGGGGGCGGAGGCCGGAGAGCCGGGGGGAACGGGGGCCGGAGAGCA
GGCGGGAGCACTCGCAGCAGTGGACCCGGGGGCTGCAGGAGCGGGCTTTC
CACTCGCATTTGCCACGCTCCTCGCCAACCGGGAAGACATCGACGCCACG
CTGCGAGACCAGCGCCCGCCGGAGCAACGCCCTGACCTTCCGCATTGCCA
GGCCAGCGACCTTCGTGTCCCCAAGAGCTACAAAGAGGCCATGGCGTCGG
AGCACCGGCACCTTTGGAGCGACTCTATGCAAAGGGAGTTTTATGGCTTG
TTGGAAGCGGGGACTTTTACTCCGGCGAAGTAGCAACTAGTGGAGAACGC
AATTAACGCTAAGTGGGTATTCGATTGGAAGGCAGATGAGTTTGGATGGC
CCACTAAGGTTAAGTCGAGACTTGTAGCGAGAGGTGATATGCAGAGAGAG
TGCATCGACTTTGGAGAGTTGTACGCGCCTACCCTTTCTGTTTCGTGTGT
TAGGATGTTGGCTGCTTTGGCGTGCGAGTTGAACTTTCGATATCGAGCAA
GCTTTTGTGCGTTCGGAGTTGGGGGAAGACGTATACATGCGTTTGCCGCA
GGGATGTGGAGCTCTATCTGGAATGATTGTAAAACTAGGCAAGAGTCTGT
ATGGCTTGAGACAGGCAACTAGGCAGTGGCATGCAATGCTGAGGTGTTTG
GTGGCGTTAGGTTTTGAACAGTGCATGGCCGATGCTTGTGTGTTTCGTTT
GATTGAGGATGAATGTGTTGTTTTCATTTTGGTTAGTACATGTAGATGAC
ATTTTTGCTGTGGCAGAGAGGGAGAGATGTGACAAATTTGGCGCCAAGCT
TAACAAGTCCGTGCAAGTGAAGAACCTGGGAGAGTTGAGATGGTATTCTG
GGTGCTTTTACGAGAGGAACAAGGAGACCGGTAGATTGACGATTTCTCAG
CAGACTTTCACGGGTGAGCTAGCAGCAGAATTTGGAGTAGTGGGAGGGGT
ACGCTGATGCGGACTTTGCAAGCAAGGCAGCAGGCCGTAGGTCGGTATCA
GGGGGGATCGTGACGTGTTGAGGAGGCGCCGTGTCTTGGTTTTCCAGAAC
GCAGAAAAGTGTGTCACGCTTTCGACCACCGAAGCAGAGTACGTCGCGTG
AAGGAGTGAAGGAGGTTTTGTTTTTAAGGCAGACTTGGCGTTTCATGTTG
CCGCAGGTCGGCATGCCGTGCATCCCCATCTTCGAGGACAACCAGGGTGC
GATTCAACTAGCGCAGAACCCCATCTCAAACTCGAACTCGAAGCACATAG
ATGTAAGGCACCATT

protein sequence of EsuBft993_4a-0001

>EsuBft993_4 ID=EsuBft993_4|Name=EsuBft993_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=554bp
MKAKGRRASVPRGPGARASKPLGRVHLDLCGPLVPSLGGNLYLFVAVDSA
SRWNKVYGLRRKSDALAATKRLLADVGRYDIGRIECFRVDNGTEWTRGDF
RRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFHVD
FASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGP
CRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGR
VVYTNNVSWVTSAPAGEGGSAGITAAPTPPPFTPPVVSINFGPAPTPSTA
TPPPPAPTPSPAPAPASPPAATPPPATTPPPAPTTSQPPSATSPSPSATP
APGNPSSASPPSPSATPDPYQPPPPPDPAMPPLTAHAMRQLRPGTKAEGM
TDPRLPSRTRSGTRHSTGLVSMLDRNTLVSMLEARSAVDKERRELGGAEA
GEPGGTGAGEQAGALAAVDPGAAGAGFPLAFATLLANREDIDATLRDQRP
PEQRPDLPHCQASDLRVPKSYKEAMASEHRHLWSDSMQREFYGLLEAGTF
TPAK

mRNA from alignment at Scaffold_589:71484..75160+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft993_4a-0001 ID=EsuBft993_4a-0001|Name=EsuBft993_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3677bp|location=Sequence derived from alignment at Scaffold_589:71484..75160+ (Ectocarpus subulatus male Bft15b)
TGTCTGTTGTAGAGAGCCTGAGTTTCAACTTGTTCTCAACGCATGCTGTT
TCTCTGAAGCAACCAATCCTCTACGACGAACGTGGTGCAACCCTACAAAA
TGGGCTGCTCTTTGCTAGAGAGGAAAAACCGTCTGCATCGTATGCCATGC
GGTTGCCGTACGACCCATCTGCGATTATTGTAGACCCTGCGGCTTTGCCC
GTATTCGTGACTGCCCCCGATTCCGCCCCCGCCGTTGGCTCCGCGCGATC
CTGAGATCACAACCGCTTCCACCGCTCCCTTGCCCACGCTTGCGAGCCTC
TTTTGAGAGAAACTGCCCAGCAGAGAGGCATCGTGCTCACCGGCAAGCTG
GAACCGTGCACGGACTGCATGAAGGCGAAGGGCAGGCGAGCGTCGGTGCC
GCGGGGGCCGGGAGCGAGGGCGTCCAAGCCTCTCGGGCGTGTTCACCTGG
ACCTGTGTGGACCGCTGGTGCCTTCCCTGGGCGGCAACCTCTACCTGTTC
GTCGCCGTGGACAGCGCCTCGCGGTGGAACAAAGTCTACGGCCTCCGGCG
GAAGTCCGACGCGCTGGCGGCAACGAAAAGGCTGCTGGCGGACGTGGGGC
GGTACGACATCGGGCGCATCGAGTGTTTCCGCGTCGACAACGGCACCGAG
TGGACCCGCGGCGATTTCCGGCGCTTCTGCGACGACAACGGCATCGGCGT
CGAGTTCACCCCGCCTGGCGTCCCGCAGTACAACGGCGTCGTCGAGAGCG
CCATCTGGCGCATCATGAAGGCCGGCATGGCCGCCCGCCGCAGCGCTGGC
CGTGTGTTCCACGTCGACTTCGCCTCCATCCCCGGCCTCGACGAGCGTGG
TGACCGTCTTTGGATGGAATCGGCGAAGTGGGCCGCCGACGCTCTCAACC
AGTCGGCGACCAAGGCCAACCCCGGGCGGCGCTCGCCGCACGAGATGTTC
ACCGGCGAGCAGGGGCCGTGCCGCGTGCTGCCGTTCTTCCAGCCCGGCTT
CATGCGCGAGGACCGCCGCACCAAGCTCGACGACCAGGCCACCCTCTGTT
ACTACCTGAACGGCGGCGACAACCACCCGAGCGGCACCGTCAAGGTCCTC
AAGGCGTCCACCGGCCGCGTCGTCTACACCAACAACGTGTCGTGGGTGAC
GTCGGCGCCAGCCGGCGAGGGGGGTTCCGCTGGTATCACCGCTGCGCCGA
CACCCCCCCCGTTCACGCCGCCGGTCGTCTCGATCAACTTTGGCCCAGCA
CCGACGCCTTCGACCGCCACACCGCCACCGCCAGCGCCCACGCCGTCGCC
CGCTCCCGCTCCTGCCTCGCCCCCTGCCGCAACGCCGCCGCCAGCGACCA
CGCCGCCGCCCGCTCCCACGACTTCACAGCCGCCCTCTGCCACTTCGCCG
TCACCGTCGGCGACCCCCGCTCCTGGCAATCCGTCCTCTGCCTCTCCGCC
GTCACCGTCGGCGACCCCCGATCCATACCAGCCGCCGCCGCCGCCGGACC
CCGCGATGCCCCCGCTTACGGCTCACGCCATGCGGCAGCTTCGCCCGGGT
ACAAAGGCCGAGGGTATGACAGACCCGCGGCTGCCAAGCCGTACGAGATC
GGGCACGAGGCACAGCACAGGACTTGTCTCGATGCTAGACAGGAACACTC
TGGTGTCGATGCTGGAGGCTCGGAGCGCGGTGGATAAGGAGCGCAGGGAG
CTGGGGGGGGCGGAGGCCGGAGAGCCGGGGGGAACGGGGGCCGGAGAGCA
GGCGGGAGCACTCGCAGCAGTGGACCCGGGGGCTGCAGGAGCGGGCTTTC
CACTCGCATTTGCCACGCTCCTCGCCAACCGGGAAGACATCGACGCCACG
CTGCGAGACCAGCGCCCGCCGGAGCAACGCCCTGACCTTCCGCATTGCCA
GGCCAGCGACCTTCGTGTCCCCAAGAGCTACAAAGAGGCCATGGCGTCGG
AGCACCGGCACCTTTGGAGCGACTCTATGCAAAGGGAGTTTTATGGCTTG
TTGGAAGCGGGGACTTTTACTCCGGCGAAGTAGCAACTAGTGGAGAACGC
AATTAACGCTAAGTGGGTATTCGATTGGAAGGCAGATGAGTTTGGATGGC
CCACTAAGGTTAAGTCGAGACTTGTAGCGAGAGGTGATATGCAGAGAGAG
TGCATCGACTTTGGAGAGTTGTACGCGCCTACCCTTTCTGTTTCGTGTGT
TAGGATGTTGGCTGCTTTGGCGTGCGAGTTGAACTTTCGATATCGAGCAA
GCTTTTGTGCGTTCGGAGTTGGGGGAAGACGTATACATGCGTTTGCCGCA
GGGATGTGGAGCTCTATCTGGAATGATTGTAAAACTAGGCAAGAGTCTGT
ATGGCTTGAGACAGGCAACTAGGCAGTGGCATGCAATGCTGAGGTGTTTG
GTGGCGTTAGGTTTTGAACAGTGCATGGCCGATGCTTGTGTGTTTCGTTT
GATTGAGGATGAATGTGTTGTTTTCATTTTGGTTAGTACATGTAGATGAC
ATTTTTGCTGTGGCAGAGAGGGAGAGATGTGACAAATTTGGCGCCAAGCT
TAACAAGTCCGTGCAAGTGAAGAACCTGGGAGAGTTGAGATGGTATTCTG
GGTGCTTTTACGAGAGGAACAAGGAGACCGGTAGATTGACGATTTCTCAG
CAGACTTTCACGGGTGAGCTAGCAGCAGAATTTGGAGTAGTGGGAGGTAA
GAGCCTTCCGATGTCTTCGGGGGTGAAGCTTTCCGATTTTGATGCGCATG
AGGTGGCGGNGACAGACTTTCCGTTTCGTGAGCTGGTAGGATCGTGGATA
TGGCTGGCGATTCAGACTAGGCCAGACATTGCGAATGCAGTAAGGGCAGT
AGCTAGGTATTGCGCATCCCCGAAGCTGGTACACTGGATTGCAGCGATGG
AGATTTTAGGCTATGCGAGGAGGACGAATCACTTTGGTATTTCGTTTCAG
AGAGGTACGGTGGAGGGATTAATNGGTAGGATCGTTGATGTGGCTGGCGA
CTCAGACTAGCCCAGACATTGCGATTGCAGGGCAGTAGCTAGGTGTTGCG
CATCTCCGAAGCTGGTACACTGGAATGCAGCGATGGAGATTTTAGGCAAT
GCGAGGAGGACGAATCACTTTGGTATTTCGTTTCAGAGAGGTACGGTGGA
GGGATTAATCTTGCAGGGGTACGCTGATGCGGACTTTGCAAGCAAGGCAG
CAGGCCGTAGGTCGGTATCAGGGGGGATCGTGACGTGTTGAGGAGGCGCC
GTGTCTTGGTTTTCCAGAACGCAGAAGTGTGTCACGCTTTCGACCACCGA
AGCGGTATCAGGGGGGATCGTGACGTGTTGAGGAGGCCTTGTGTCTTGGT
TTTCCAGAACGCAGAAGTGTGTCACGCTTTCGACCACCGAAGCAGAGTAC
GTCGCGTGAAGGAGGTTTTGTTTTTGNTTGGTTTTCCAGAACGCAGAAGT
GTGTCACGCTTTCGACCACCGAAGCGGTATCAGGGGGGATCGTGACGTGT
TGAGGAGGCCTNACGTAGTGAAGGAGGTTTTGTTTTTAAGGCAGACTTGG
CGTTTCATGTTGCCGCAGGTCGGCATGCCGTGCATCCCCATCTTCGAGGA
CAACCAGGGTGCGATTCAACTAGCGCAGAACCCCATCTCAAACTCGAACT
CGAAGCACATAGATGTAAGGCACCATT

Coding sequence (CDS) from alignment at Scaffold_589:71484..75160+

>EsuBft993_4a-0001 ID=EsuBft993_4a-0001|Name=EsuBft993_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1665bp|location=Sequence derived from alignment at Scaffold_589:71484..75160+ (Ectocarpus subulatus male Bft15b)
ATGAAGGCGAAGGGCAGGCGAGCGTCGGTGCCGCGGGGGCCGGGAGCGAG
GGCGTCCAAGCCTCTCGGGCGTGTTCACCTGGACCTGTGTGGACCGCTGG
TGCCTTCCCTGGGCGGCAACCTCTACCTGTTCGTCGCCGTGGACAGCGCC
TCGCGGTGGAACAAAGTCTACGGCCTCCGGCGGAAGTCCGACGCGCTGGC
GGCAACGAAAAGGCTGCTGGCGGACGTGGGGCGGTACGACATCGGGCGCA
TCGAGTGTTTCCGCGTCGACAACGGCACCGAGTGGACCCGCGGCGATTTC
CGGCGCTTCTGCGACGACAACGGCATCGGCGTCGAGTTCACCCCGCCTGG
CGTCCCGCAGTACAACGGCGTCGTCGAGAGCGCCATCTGGCGCATCATGA
AGGCCGGCATGGCCGCCCGCCGCAGCGCTGGCCGTGTGTTCCACGTCGAC
TTCGCCTCCATCCCCGGCCTCGACGAGCGTGGTGACCGTCTTTGGATGGA
ATCGGCGAAGTGGGCCGCCGACGCTCTCAACCAGTCGGCGACCAAGGCCA
ACCCCGGGCGGCGCTCGCCGCACGAGATGTTCACCGGCGAGCAGGGGCCG
TGCCGCGTGCTGCCGTTCTTCCAGCCCGGCTTCATGCGCGAGGACCGCCG
CACCAAGCTCGACGACCAGGCCACCCTCTGTTACTACCTGAACGGCGGCG
ACAACCACCCGAGCGGCACCGTCAAGGTCCTCAAGGCGTCCACCGGCCGC
GTCGTCTACACCAACAACGTGTCGTGGGTGACGTCGGCGCCAGCCGGCGA
GGGGGGTTCCGCTGGTATCACCGCTGCGCCGACACCCCCCCCGTTCACGC
CGCCGGTCGTCTCGATCAACTTTGGCCCAGCACCGACGCCTTCGACCGCC
ACACCGCCACCGCCAGCGCCCACGCCGTCGCCCGCTCCCGCTCCTGCCTC
GCCCCCTGCCGCAACGCCGCCGCCAGCGACCACGCCGCCGCCCGCTCCCA
CGACTTCACAGCCGCCCTCTGCCACTTCGCCGTCACCGTCGGCGACCCCC
GCTCCTGGCAATCCGTCCTCTGCCTCTCCGCCGTCACCGTCGGCGACCCC
CGATCCATACCAGCCGCCGCCGCCGCCGGACCCCGCGATGCCCCCGCTTA
CGGCTCACGCCATGCGGCAGCTTCGCCCGGGTACAAAGGCCGAGGGTATG
ACAGACCCGCGGCTGCCAAGCCGTACGAGATCGGGCACGAGGCACAGCAC
AGGACTTGTCTCGATGCTAGACAGGAACACTCTGGTGTCGATGCTGGAGG
CTCGGAGCGCGGTGGATAAGGAGCGCAGGGAGCTGGGGGGGGCGGAGGCC
GGAGAGCCGGGGGGAACGGGGGCCGGAGAGCAGGCGGGAGCACTCGCAGC
AGTGGACCCGGGGGCTGCAGGAGCGGGCTTTCCACTCGCATTTGCCACGC
TCCTCGCCAACCGGGAAGACATCGACGCCACGCTGCGAGACCAGCGCCCG
CCGGAGCAACGCCCTGACCTTCCGCATTGCCAGGCCAGCGACCTTCGTGT
CCCCAAGAGCTACAAAGAGGCCATGGCGTCGGAGCACCGGCACCTTTGGA
GCGACTCTATGCAAAGGGAGTTTTATGGCTTGTTGGAAGCGGGGACTTTT
ACTCCGGCGAAGTAG