EsuBft993_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft993_6a-0001
Unique Name	EsuBft993_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_589	contig	Scaffold_589:47037..47996 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft993_6
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	96
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft993_6a	EsuBft993_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_589 47037..47996 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft993_6a-0001-exon	EsuBft993_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_589 47037..47996 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft993_6a-0001-cds	EsuBft993_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_589 47037..47273 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft993_6a-0001-exon	agat-three_prime_utr-23870	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_589 47274..47996 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft993_6a-0001	EsuBft993_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_589 47037..47273 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_589:47037..47996+
coding sequence from alignment at Scaffold_589:47037..47996+

spliced messenger RNA

>EsuBft993_6a-0001 ID=EsuBft993_6a-0001|Name=EsuBft993_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=960bp|location=Sequence derived from alignment at Scaffold_589:47037..47996+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGATGGCGTGGCCTACCGCATGTCTCTCACTCTCTAAGCAACAAGG
TCTTAAGTCAACCTTCTTCCTCTTTCGGCCTCTGACGAGCTACCGCACCC
AAACACAATATATTGTAAGGCCTGGTGTTGGTAGTGGGTATTGGCGTCTG
AGCGGTGGGAGCTGGGCCATCGGGGCAGCGGACACCATTTTCATAGCTGG
GATCGCGACCAAAGGGGGCGAGGACAGCAGTGCATAGCTGGTGCGGTGGC
CATTGCGGGGACCGGGACAGCAGGGTTTATAGCTGGGACAGCACTTCGAG
GCTGGGACAGCAGGGAGGGTTTAGAGTTTTAGTTTGATATGCCTGGAACG
GAGGAGGACGCAACTCTGAGCGCGAGTTGGATGAGGCGCTACGAGCTATA
GATGTTGCCAAGGCTGAGACGAAGGAGGCCAAGGCTCAGACGAAGGAGGC
CAAAGCTGAGACGGAGGAGCTTAGGGCAGCACAGCGGCGGTCTGCGGGTG
CACCTGCCGGCAGCAGCTCAGGAGGCGACGGTCTAGTTGCTCCTGGAGGG
GCTTCATCTGCACCGGTGAGGCCAATGTGGCCAGGCGGGGTGAGTCATGA
TGGCGGTACTGGGGTGCCGGGCTTGCCTCTGGGAGGTACAATTGTCAGAA
CTCCTGTGCCTAGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNN

protein sequence of EsuBft993_6a-0001

>EsuBft993_6 ID=EsuBft993_6|Name=EsuBft993_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=78bp
MAMAWPTACLSLSKQQGLKSTFFLFRPLTSYRTQTQYIVRPGVGSGYWRL
SGGSWAIGAADTIFIAGIATKGGEDSSA

mRNA from alignment at Scaffold_589:47037..47996+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft993_6a-0001 ID=EsuBft993_6a-0001|Name=EsuBft993_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=960bp|location=Sequence derived from alignment at Scaffold_589:47037..47996+ (Ectocarpus subulatus male Bft15b)
ATGGCGATGGCGTGGCCTACCGCATGTCTCTCACTCTCTAAGCAACAAGG
TCTTAAGTCAACCTTCTTCCTCTTTCGGCCTCTGACGAGCTACCGCACCC
AAACACAATATATTGTAAGGCCTGGTGTTGGTAGTGGGTATTGGCGTCTG
AGCGGTGGGAGCTGGGCCATCGGGGCAGCGGACACCATTTTCATAGCTGG
GATCGCGACCAAAGGGGGCGAGGACAGCAGTGCATAGCTGGTGCGGTGGC
CATTGCGGGGACCGGGACAGCAGGGTTTATAGCTGGGACAGCACTTCGAG
GCTGGGACAGCAGGGAGGGTTTAGAGTTTTAGTTTGATATGCCTGGAACG
GAGGAGGACGCAACTCTGAGCGCGAGTTGGATGAGGCGCTACGAGCTATA
GATGTTGCCAAGGCTGAGACGAAGGAGGCCAAGGCTCAGACGAAGGAGGC
CAAAGCTGAGACGGAGGAGCTTAGGGCAGCACAGCGGCGGTCTGCGGGTG
CACCTGCCGGCAGCAGCTCAGGAGGCGACGGTCTAGTTGCTCCTGGAGGG
GCTTCATCTGCACCGGTGAGGCCAATGTGGCCAGGCGGGGTGAGTCATGA
TGGCGGTACTGGGGTGCCGGGCTTGCCTCTGGGAGGTACAATTGTCAGAA
CTCCTGTGCCTAGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNN

Coding sequence (CDS) from alignment at Scaffold_589:47037..47996+

>EsuBft993_6a-0001 ID=EsuBft993_6a-0001|Name=EsuBft993_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=237bp|location=Sequence derived from alignment at Scaffold_589:47037..47996+ (Ectocarpus subulatus male Bft15b)
ATGGCGATGGCGTGGCCTACCGCATGTCTCTCACTCTCTAAGCAACAAGG
TCTTAAGTCAACCTTCTTCCTCTTTCGGCCTCTGACGAGCTACCGCACCC
AAACACAATATATTGTAAGGCCTGGTGTTGGTAGTGGGTATTGGCGTCTG
AGCGGTGGGAGCTGGGCCATCGGGGCAGCGGACACCATTTTCATAGCTGG
GATCGCGACCAAAGGGGGCGAGGACAGCAGTGCATAG