EsuBft993_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft993_7a-0001
Unique NameEsuBft993_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_589contigScaffold_589:28319..30118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G0Q3
ProteomeIdEsuBft993_7
Protein domainsIPR006600
Protein domainsIPR009057
Protein domainsIPR007087
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length128
Hectar predicted targeting categoryother localisation
Evalue7.32e-202
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Cross References
External references for this mRNA
DatabaseAccession
GO0003677
GO0046872
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft993_7aEsuBft993_7aEctocarpus subulatus male Bft15bgeneScaffold_589 28319..30118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft993_7a-0001EsuBft993_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_589 28319..30118 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft993_7a-0001-exonagat-exon-45697Ectocarpus subulatus male Bft15bexonScaffold_589 28319..28322 +
EsuBft993_7a-0001-exonEsuBft993_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_589 28387..28502 +
EsuBft993_7a-0001-exonagat-exon-45696Ectocarpus subulatus male Bft15bexonScaffold_589 28549..28779 +
EsuBft993_7a-0001-exonagat-exon-45699Ectocarpus subulatus male Bft15bexonScaffold_589 29145..29511 +
EsuBft993_7a-0001-exonagat-exon-45698Ectocarpus subulatus male Bft15bexonScaffold_589 29553..30118 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft993_7a-0001-cdsEsuBft993_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_589 28319..28322 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft993_7a-0001 ID=EsuBft993_7a-0001|Name=EsuBft993_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1284bp|location=Sequence derived from alignment at Scaffold_589:28319..30118+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTTGAAAGGACGGGGTCTGATTCTTGACCGTCACTTCGAGACGAT
AAAAACAACACATGTGAAGGCGGGACACTCCGTTGCGAAGGAGCGGTGGG
ACGCCATCAAGAGCGCGTGGATTGATGGTGAAATCCAGGGCATTACCAGC
AGCACCCGCCTGTCCTTGTCGTCCCAACAAGATGCCAGCAGCGCACGAGG
TACTGCTGCACCTTCTCAGCACCCACCAGCTGCTGCAGCGGGTACCGCGA
GGAGGAAGGTGGATCGAGGGAAGCACGCCAGGGAGAGAGCTGCGAAAGGC
ACTTTAGGCGGCAACATTTGCAACGCGTTCTCGATTGGCAGCGGACAACC
GATTGAGCGGACTCGTGGTGGAGTGAAAGAGTTCGTATCCGGTATCACCT
TCCCGCCTCCGGCCCCGGATTCCCGCCGATCCTGCCCTCACTGTACCATG
ACCTTCGTGAACGAGCAAGGCCTTGGGATCCACGTGAGAACGCAGCACAG
CAGTGCAAACATGTCCAACGGCGTGCGGCTGCGGCGGATGCTTCGGAAGA
ATCTCGAAGGGCGTGTCCTGCCGTGGGAAGAAGCCGGGCCTGGGCGTTGT
TGGCACGTGAAGGTCGATGATGCGACGGGGGCGGCTTCGTTTGTCCTCCA
GCGGAAGCGCTTTCTCGATCTAGACTTGGAAAGCGACGGCTTTATGGACC
GCGAAAACAAGGAAAGTCCCAATGCTGTCAACCAGCTGCGCATCCTCGAG
GATAACGCCGCGGACCTCTGCAAGGAGGAGGAGCGCACACCTCTTCAGTT
CTTAGAGGATCGTCTCAAGGTTCACCACAGCAACATCGTGAAGTGGGCCA
AGGACGAGAAGGCCATAGTCGCGGCGGCAGCAGACGACGTGAAGAAGAGC
CTCCTCGCCAGGCAGCAGCCTAAGCGGTGGTTTCCTGAGGCAGAAAAGAG
GCTTTACAAGATATTCGTGGAGCGGCGTAAGAGGAAGCTGAAGGTATCGA
CCCTATGGCTGACGATCACGTTCCGGGAGCTCGTGCGAGAGATGTTTCCC
GGGGACCAACGGGCGGCGGCGTTCCGCGCATCCTTCAGGTGGGCACGAAA
ATGGGCCAAGAGGCACAACCTGTCCAAAAGACGTCGGACCAACGTCAAGA
ACAAGTCTATTAAGGAACGCCTACCAAAGATCCAGCGCTTCCACCGACTG
TTTCGCAAGCTCCTGCAAGAGCCGGTACGGTACAGGGCGCCCGATGAGTC
GGACGTATCGGCGATTACGACGGTCGCAGANNNN
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protein sequence of EsuBft993_7a-0001

>EsuBft993_7 ID=EsuBft993_7|Name=EsuBft993_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=428bp
MELKGRGLILDRHFETIKTTHVKAGHSVAKERWDAIKSAWIDGEIQGITS
STRLSLSSQQDASSARGTAAPSQHPPAAAAGTARRKVDRGKHARERAAKG
TLGGNICNAFSIGSGQPIERTRGGVKEFVSGITFPPPAPDSRRSCPHCTM
TFVNEQGLGIHVRTQHSSANMSNGVRLRRMLRKNLEGRVLPWEEAGPGRC
WHVKVDDATGAASFVLQRKRFLDLDLESDGFMDRENKESPNAVNQLRILE
DNAADLCKEEERTPLQFLEDRLKVHHSNIVKWAKDEKAIVAAAADDVKKS
LLARQQPKRWFPEAEKRLYKIFVERRKRKLKVSTLWLTITFRELVREMFP
GDQRAAAFRASFRWARKWAKRHNLSKRRRTNVKNKSIKERLPKIQRFHRL
FRKLLQEPVRYRAPDESDVSAITTVAXX
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mRNA from alignment at Scaffold_589:28319..30118+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft993_7a-0001 ID=EsuBft993_7a-0001|Name=EsuBft993_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1800bp|location=Sequence derived from alignment at Scaffold_589:28319..30118+ (Ectocarpus subulatus male Bft15b)
ATGGGTTGTTGAAAGATCTTGGCAAACTTGCAGAGTTGAAAGGACGGGGT
CTGATTCTTGACCTGCAGAGTTGAAAGGACGGGGTCTGATTCTTGACCGT
CACTTCGAGACGATAAAAACAACACATGTGAAGGCGGGACACTCCGTTGC
GAAGGAGCGGTGGGACGCCATCAAGAGCGCGTGGGTTGAAGCAGAACGGT
ATCTTCGACGAAGGAGAGTGGATCGCGCAGATTGATGGTGAAATCCAGGG
CATTACCAGCAGCACCCGCCTGTCCTTGTCGTCCCAACAAGATGCCAGCA
GCGCACGAGGTACTGCTGCACCTTCTCAGCACCCACCAGCTGCTGCAGCG
GGTACCGCGAGGAGGAAGGTGGATCGAGGGAAGCACGCCAGGGAGAGAGC
TGCGAAAGGCACTTTAGGCGGCAACATTTGCAACGCGTTCTCGATTGGCA
GCGGACAACCGGTGAGTTCGGTTACATATGTATCCGACGCACGCTGTTGC
TTTGTTTTGCTACACAGGTGTTTTTTGTTTTTTTATTTCCCGATAGTCTA
AGCAAGAGAAAAAATGAAAAAAAAAATAGGTGAGTTTATTAGTCTAATGT
GACCCAAACGAAACAGACGTCATCTCCCCACTCTCTCGTGTGATTCACGA
TAATCTTTTCAAGGAAGTATTCGTTCAGAGTGCATACTTCTATAGTAGAT
ACTTTTGCCAGCGGCATCCACGGAAGTTTGAATTCAACAGCGCCACAACT
AAGAGCGACTGACACGTCACATGGCTCGTTGAATCCCCTACACGGCAATT
ACACCCTTTCCCATGGCACCGAGCAGATTGAGCGGACTCGTGGTGGAGTG
AAAGAGTTCGTATCCGGTATCACCTTCCCGCCTCCGGCCCCGGATTCCCG
CCGATCCTGCCCTCACTGTACCATGACCTTCGTGAACGAGCAAGGCCTTG
GGATCCACGTGAGAACGCAGCACAGCAGTGCAAACATGTCCAACGGCGTG
CGGCTGCGGCGGATGCTTCGGAAGAATCTCGAAGGGCGTGTCCTGCCGTG
GGAAGAAGCCGGGCCTGGGCGTTGTTGGCACGTGAAGGTCGATGATGCGA
CGGGGGCGGCTTCGTTTGTCCTCCAGCGGAAGCGCTTTCTCGATCTAGAC
TTGGAAAGCGACGGCTTTATGGACCGCGAAAACAAGGAAAGTCGTGGAGA
TCCCAAGCGCAAGCGATAAGACTATGGGTTAAAGCCAATGCTGTCAACCA
GCTGCGCATCCTCGAGGATAACGCCGCGGACCTCTGCAAGGAGGAGGAGC
GCACACCTCTTCAGTTCTTAGAGGATCGTCTCAAGGTTCACCACAGCAAC
ATCGTGAAGTGGGCCAAGGACGAGAAGGCCATAGTCGCGGCGGCAGCAGA
CGACGTGAAGAAGAGCCTCCTCGCCAGGCAGCAGCCTAAGCGGTGGTTTC
CTGAGGCAGAAAAGAGGCTTTACAAGATATTCGTGGAGCGGCGTAAGAGG
AAGCTGAAGGTATCGACCCTATGGCTGACGATCACGTTCCGGGAGCTCGT
GCGAGAGATGTTTCCCGGGGACCAACGGGCGGCGGCGTTCCGCGCATCCT
TCAGGTGGGCACGAAAATGGGCCAAGAGGCACAACCTGTCCAAAAGACGT
CGGACCAACGTCAAGAACAAGTCTATTAAGGAACGCCTACCAAAGATCCA
GCGCTTCCACCGACTGTTTCGCAAGCTCCTGCAAGAGCCGGTACGGTACA
GGGCGCCCGATGAGTCGGACGTATCGGCGATTACGACGGTCGCAGANNNN
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Coding sequence (CDS) from alignment at Scaffold_589:28319..30118+

>EsuBft993_7a-0001 ID=EsuBft993_7a-0001|Name=EsuBft993_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1284bp|location=Sequence derived from alignment at Scaffold_589:28319..30118+ (Ectocarpus subulatus male Bft15b)
ATGGAGTTGAAAGGACGGGGTCTGATTCTTGACCGTCACTTCGAGACGAT
AAAAACAACACATGTGAAGGCGGGACACTCCGTTGCGAAGGAGCGGTGGG
ACGCCATCAAGAGCGCGTGGATTGATGGTGAAATCCAGGGCATTACCAGC
AGCACCCGCCTGTCCTTGTCGTCCCAACAAGATGCCAGCAGCGCACGAGG
TACTGCTGCACCTTCTCAGCACCCACCAGCTGCTGCAGCGGGTACCGCGA
GGAGGAAGGTGGATCGAGGGAAGCACGCCAGGGAGAGAGCTGCGAAAGGC
ACTTTAGGCGGCAACATTTGCAACGCGTTCTCGATTGGCAGCGGACAACC
GATTGAGCGGACTCGTGGTGGAGTGAAAGAGTTCGTATCCGGTATCACCT
TCCCGCCTCCGGCCCCGGATTCCCGCCGATCCTGCCCTCACTGTACCATG
ACCTTCGTGAACGAGCAAGGCCTTGGGATCCACGTGAGAACGCAGCACAG
CAGTGCAAACATGTCCAACGGCGTGCGGCTGCGGCGGATGCTTCGGAAGA
ATCTCGAAGGGCGTGTCCTGCCGTGGGAAGAAGCCGGGCCTGGGCGTTGT
TGGCACGTGAAGGTCGATGATGCGACGGGGGCGGCTTCGTTTGTCCTCCA
GCGGAAGCGCTTTCTCGATCTAGACTTGGAAAGCGACGGCTTTATGGACC
GCGAAAACAAGGAAAGTCCCAATGCTGTCAACCAGCTGCGCATCCTCGAG
GATAACGCCGCGGACCTCTGCAAGGAGGAGGAGCGCACACCTCTTCAGTT
CTTAGAGGATCGTCTCAAGGTTCACCACAGCAACATCGTGAAGTGGGCCA
AGGACGAGAAGGCCATAGTCGCGGCGGCAGCAGACGACGTGAAGAAGAGC
CTCCTCGCCAGGCAGCAGCCTAAGCGGTGGTTTCCTGAGGCAGAAAAGAG
GCTTTACAAGATATTCGTGGAGCGGCGTAAGAGGAAGCTGAAGGTATCGA
CCCTATGGCTGACGATCACGTTCCGGGAGCTCGTGCGAGAGATGTTTCCC
GGGGACCAACGGGCGGCGGCGTTCCGCGCATCCTTCAGGTGGGCACGAAA
ATGGGCCAAGAGGCACAACCTGTCCAAAAGACGTCGGACCAACGTCAAGA
ACAAGTCTATTAAGGAACGCCTACCAAAGATCCAGCGCTTCCACCGACTG
TTTCGCAAGCTCCTGCAAGAGCCGGTACGGTACAGGGCGCCCGATGAGTC
GGACGTATCGGCGATTACGACGGTCGCAGANNNN
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