EsuBft1135_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1135_2a-0001
Unique Name	EsuBft1135_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_582	contig	Scaffold_582:368380..369954 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	202698.XP_007387066.1
ProteomeId	EsuBft1135_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	4751\|Fungi
Length	157
Hectar predicted targeting category	other localisation
Evalue	2.36e-08
EggNOG OGs	29JY0@1\|root,2RT6R@2759\|Eukaryota,39VBJ@33154\|Opisthokonta,3P12S@4751\|Fungi,3V3WY@5204\|Basidiomycota,22F53@155619\|Agaricomycetes,3H41B@355688\|Agaricomycetes incertae sedis
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1135_2a	EsuBft1135_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_582 368380..369954 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1135_2a-0001-exon	EsuBft1135_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_582 368380..369954 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1135_2a-0001-exon	agat-three_prime_utr-1284	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_582 368380..369186 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1135_2a-0001-cds	EsuBft1135_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_582 369187..369663 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1135_2a-0001-exon	agat-five_prime_utr-817	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_582 369664..369954 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1135_2a-0001	EsuBft1135_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_582 369187..369663 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_582:368380..369954-
coding sequence from alignment at Scaffold_582:368380..369954-

spliced messenger RNA

>EsuBft1135_2a-0001 ID=EsuBft1135_2a-0001|Name=EsuBft1135_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1575bp|location=Sequence derived from alignment at Scaffold_582:368380..369954- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGATTTCCCACCGATGATTTTTTTCCGATTTCAAAAAAAAACTCGGTTT
CGGAGTGTTTCGGGTCGTTTCACACGCCCTCGGGGAATTTTTTCCCGCCA
CACACACACCAGAGGACACACACACACACACCCTTTACGCACGCAACGAA
AGACGCACACGCGCTCCGGGCACATGGGTCGCCCAAAGGGTAAGCGCAAG
CTGCCAAGGAACGCCGACGGCACGATTCGGAAGGCCCCTTCGCCCCCTGC
GGACCCTGCTGTAGGCAACGACTCTCCTCCCTCTTCCGACCATGAAGGCG
CCAATATTTCTCCCATGCACACCAACGACCACGACGACGACTGGCCCCAC
CGCCGTTCTCATCGGCCTGCCGAAAGGAGGAAAGCAGCTGCTCATGGAGA
TGGGGCTGTGGGAAGGTGAGCCAACCCTACTCGTTCACGAGTGCAGCGCG
TGCAGGGCGGAAAAGGCGGCAACAAGGCAAGCCATTACCGCCTTCAACCG
CGGTGGAGAGGGGCGGCAGCAGGTGGTGGACAACACGGGGCAGGGAGAGG
AGGACGGCGGAGAGGACGGGGACTCGGGTGGGAGCGGGGCAGCTGGTGAA
GCAGGCAAGAGGCGTCGCTGCTGCGTCGTGCGCGTTCTGTCTGAGCTCAA
GGCGTTCAGGGAGGAGCTCAACATGGTTGAGAAGCTCTTCAAGGCACACG
GGCACCTGTGCATCTTCTTGCCGAAGTACCACCCAGAGCTCAACGCAATC
GAGCGATACTGTACTTAAGCACCTCCTCCGCCTCCACTGCGAGTATTCCC
TTCGCCACATGCTCCAGGTCTTGCCCGGCGCGTTGAGCGGCGTACCCGCA
CGGTTTATCCGCGCATGGAGCAGGGTGACGTGGCTGTACATCGAAGCCTA
CGACGAGGGCCTGGAGGACTACCTCGAGTACCGCGATCTCAAGGAGTGGG
GGAAGCACCGAGAAGCCACCGCCAGGGGAGATGCCGTGATTCAGGCGAGG
GGGGCGGGGAAGACGCCGGAGCAGAAGAAGGCAGCCGAGGCGAAGGCGCT
TGCGGCTGCGCAGGAAGTGCGCAAGAAGTCGATGGCAGCGACCAGGGAAG
CCTTCAACACGTGGACGAGCAAGAGAGCCTCCCGGAAGGAGCAGCTACGG
CTGTGGATTTTGCGCAACACGATGAATTTTTTGAGGAAATGGTTGGGCGG
GCACGCTCAGGCGTGAGTGGGGAGGGTACGTATCTATATGTCGCGGTGTG
TTGTAGTGTTGGTTTCTCGCGTTTAGGCGCGGTAGAGGCGTTCGTCACGG
TCACCAACTCAACGCTATAGCTGTCTCTCTTGGTATCGGACTTGCTTAGA
GAGAACGGATGTGATTGCTGCATGTTTTGTTTGCAGCACCTTCACCAGCC
AGGGGTTGAGTAGAGAGTAAACGGCGGTGTTGAAGTATGTAATTATGTAC
ATATGTAACGTGTAAATAATGTTAATATGGATTGACAACGGTTTAACTGA
TGTTCTGAATGCATATACGTGTAGAAGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNN

protein sequence of EsuBft1135_2a-0001

>EsuBft1135_2 ID=EsuBft1135_2|Name=EsuBft1135_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=158bp
MKAPIFLPCTPTTTTTTGPTAVLIGLPKGGKQLLMEMGLWEGEPTLLVHE
CSACRAEKAATRQAITAFNRGGEGRQQVVDNTGQGEEDGGEDGDSGGSGA
AGEAGKRRRCCVVRVLSELKAFREELNMVEKLFKAHGHLCIFLPKYHPEL
NAIERYCT

mRNA from alignment at Scaffold_582:368380..369954-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1135_2a-0001 ID=EsuBft1135_2a-0001|Name=EsuBft1135_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1575bp|location=Sequence derived from alignment at Scaffold_582:368380..369954- (Ectocarpus subulatus male Bft15b)
GTGATTTCCCACCGATGATTTTTTTCCGATTTCAAAAAAAAACTCGGTTT
CGGAGTGTTTCGGGTCGTTTCACACGCCCTCGGGGAATTTTTTCCCGCCA
CACACACACCAGAGGACACACACACACACACCCTTTACGCACGCAACGAA
AGACGCACACGCGCTCCGGGCACATGGGTCGCCCAAAGGGTAAGCGCAAG
CTGCCAAGGAACGCCGACGGCACGATTCGGAAGGCCCCTTCGCCCCCTGC
GGACCCTGCTGTAGGCAACGACTCTCCTCCCTCTTCCGACCATGAAGGCG
CCAATATTTCTCCCATGCACACCAACGACCACGACGACGACTGGCCCCAC
CGCCGTTCTCATCGGCCTGCCGAAAGGAGGAAAGCAGCTGCTCATGGAGA
TGGGGCTGTGGGAAGGTGAGCCAACCCTACTCGTTCACGAGTGCAGCGCG
TGCAGGGCGGAAAAGGCGGCAACAAGGCAAGCCATTACCGCCTTCAACCG
CGGTGGAGAGGGGCGGCAGCAGGTGGTGGACAACACGGGGCAGGGAGAGG
AGGACGGCGGAGAGGACGGGGACTCGGGTGGGAGCGGGGCAGCTGGTGAA
GCAGGCAAGAGGCGTCGCTGCTGCGTCGTGCGCGTTCTGTCTGAGCTCAA
GGCGTTCAGGGAGGAGCTCAACATGGTTGAGAAGCTCTTCAAGGCACACG
GGCACCTGTGCATCTTCTTGCCGAAGTACCACCCAGAGCTCAACGCAATC
GAGCGATACTGTACTTAAGCACCTCCTCCGCCTCCACTGCGAGTATTCCC
TTCGCCACATGCTCCAGGTCTTGCCCGGCGCGTTGAGCGGCGTACCCGCA
CGGTTTATCCGCGCATGGAGCAGGGTGACGTGGCTGTACATCGAAGCCTA
CGACGAGGGCCTGGAGGACTACCTCGAGTACCGCGATCTCAAGGAGTGGG
GGAAGCACCGAGAAGCCACCGCCAGGGGAGATGCCGTGATTCAGGCGAGG
GGGGCGGGGAAGACGCCGGAGCAGAAGAAGGCAGCCGAGGCGAAGGCGCT
TGCGGCTGCGCAGGAAGTGCGCAAGAAGTCGATGGCAGCGACCAGGGAAG
CCTTCAACACGTGGACGAGCAAGAGAGCCTCCCGGAAGGAGCAGCTACGG
CTGTGGATTTTGCGCAACACGATGAATTTTTTGAGGAAATGGTTGGGCGG
GCACGCTCAGGCGTGAGTGGGGAGGGTACGTATCTATATGTCGCGGTGTG
TTGTAGTGTTGGTTTCTCGCGTTTAGGCGCGGTAGAGGCGTTCGTCACGG
TCACCAACTCAACGCTATAGCTGTCTCTCTTGGTATCGGACTTGCTTAGA
GAGAACGGATGTGATTGCTGCATGTTTTGTTTGCAGCACCTTCACCAGCC
AGGGGTTGAGTAGAGAGTAAACGGCGGTGTTGAAGTATGTAATTATGTAC
ATATGTAACGTGTAAATAATGTTAATATGGATTGACAACGGTTTAACTGA
TGTTCTGAATGCATATACGTGTAGAAGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNN

Coding sequence (CDS) from alignment at Scaffold_582:368380..369954-

>EsuBft1135_2a-0001 ID=EsuBft1135_2a-0001|Name=EsuBft1135_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=477bp|location=Sequence derived from alignment at Scaffold_582:368380..369954- (Ectocarpus subulatus male Bft15b)
ATGAAGGCGCCAATATTTCTCCCATGCACACCAACGACCACGACGACGAC
TGGCCCCACCGCCGTTCTCATCGGCCTGCCGAAAGGAGGAAAGCAGCTGC
TCATGGAGATGGGGCTGTGGGAAGGTGAGCCAACCCTACTCGTTCACGAG
TGCAGCGCGTGCAGGGCGGAAAAGGCGGCAACAAGGCAAGCCATTACCGC
CTTCAACCGCGGTGGAGAGGGGCGGCAGCAGGTGGTGGACAACACGGGGC
AGGGAGAGGAGGACGGCGGAGAGGACGGGGACTCGGGTGGGAGCGGGGCA
GCTGGTGAAGCAGGCAAGAGGCGTCGCTGCTGCGTCGTGCGCGTTCTGTC
TGAGCTCAAGGCGTTCAGGGAGGAGCTCAACATGGTTGAGAAGCTCTTCA
AGGCACACGGGCACCTGTGCATCTTCTTGCCGAAGTACCACCCAGAGCTC
AACGCAATCGAGCGATACTGTACTTAA