Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 42099.EPrPV00000022427 |
ProteomeId | EsuBft1020_6 |
Protein domains | NON_CYTOPLASMIC_DOMAIN |
Protein domains | TMhelix |
Protein domains | TRANSMEMBRANE |
Protein domains | CYTOPLASMIC_DOMAIN |
Owner | apollo_admin@sb-roscoff.fr |
Nb exon | 2 |
Max annot lvl | 121069|Pythiales |
Length | 28 |
Hectar predicted targeting category | other localisation |
Evalue | 3.27e-09 |
EggNOG OGs | 2CXBZ@1|root,2S4KE@2759|Eukaryota,1MHTN@121069|Pythiales |
Ec32 ortholog description | conserved unknown protein |
Ec32 ortholog | Ec-07_002280.1 |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
Description | function. Source PGD |
COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1020_6a-0001 ID=EsuBft1020_6a-0001|Name=EsuBft1020_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=282bp|location=Sequence derived from alignment at Scaffold_581:168604..169357+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGACAACTTGTACTCCCACTGCGATGGCGTGACGACGCCGGACGGGCT CTACTTTGACCCGGACAATGCCATCGAGGGAGAATGGTCGGACAAGATCG AGGCACAGATCAAGATCGCCACGGAGAGATGCGGCTGCGACGCCGCCAAC CGGTTGGCCCCACTGCGTGGCATGGTAGTTTTTGGGACGCCTCTGTCGTC GGTTGGCCTTGTACTGATTACGTCCCTCGTCACCTGGTCGACAGCAGTTT TTCTGCTAAGGCCGTCGTATGATCATCCATAG back to topprotein sequence of EsuBft1020_6a-0001 >EsuBft1020_6 ID=EsuBft1020_6|Name=EsuBft1020_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=93bp
MDNLYSHCDGVTTPDGLYFDPDNAIEGEWSDKIEAQIKIATERCGCDAAN RLAPLRGMVVFGTPLSSVGLVLITSLVTWSTAVFLLRPSYDHP back to topmRNA from alignment at Scaffold_581:168604..169357+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1020_6a-0001 ID=EsuBft1020_6a-0001|Name=EsuBft1020_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=754bp|location=Sequence derived from alignment at Scaffold_581:168604..169357+ (Ectocarpus subulatus male Bft15b) ATGGACAACTTGTACTCCCACTGCGATGGCGTGACGACGCCGGACGGGCT
CTACTTTGACCCGGACAATGCCATCGAGGGAGAATGGTCGGACAAGGTCA
GCAGCGGGTCATGTTGTCGCCATCCCAGTAGTCGTTTGCTACCCGCAGCA
GGTTGCGCACGTCAAACCTTACGCAACACACCAACCCCTTGAACGGCTAA
AGCGTCAGCATGTACACGCATGCGGTCTTTTCGCTAGTTCCACCGCGGGG
CCCTGCTGTTTCGCGTAGTATTCGGCAACGTTGGTGACTGCAAGGCCCCC
CTTGAATCCGTCAAAAGAAGTTAGTCATCAAGGAGGGTCAGAATTGCCAA
AATGCTCCATTGCGGGACGAAGCGCGCGACAACAAGTACAGCGTTGCTTT
AAACTCGAGATTTATGGTGCTCCCGTGCGCCCGACGTGCCAACAGTGGGG
GCTAGACGTAGCACCTAGTACAAAGGATCATGGGCGTTGATACAGAAATG
TCATGTGCCCGCGATGTTTTGCAGAATTGGAACATCGACTATTGACCGCG
TTGTCTTGTACGCCACAGATCGAGGCACAGATCAAGATCGCCACGGAGAG
ATGCGGCTGCGACGCCGCCAACCGGTTGGCCCCACTGCGTGGCATGGTAG
TTTTTGGGACGCCTCTGTCGTCGGTTGGCCTTGTACTGATTACGTCCCTC
GTCACCTGGTCGACAGCAGTTTTTCTGCTAAGGCCGTCGTATGATCATCC
ATAG back to topCoding sequence (CDS) from alignment at Scaffold_581:168604..169357+ >EsuBft1020_6a-0001 ID=EsuBft1020_6a-0001|Name=EsuBft1020_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=282bp|location=Sequence derived from alignment at Scaffold_581:168604..169357+ (Ectocarpus subulatus male Bft15b) ATGGACAACTTGTACTCCCACTGCGATGGCGTGACGACGCCGGACGGGCT CTACTTTGACCCGGACAATGCCATCGAGGGAGAATGGTCGGACAAGATCG AGGCACAGATCAAGATCGCCACGGAGAGATGCGGCTGCGACGCCGCCAAC CGGTTGGCCCCACTGCGTGGCATGGTAGTTTTTGGGACGCCTCTGTCGTC GGTTGGCCTTGTACTGATTACGTCCCTCGTCACCTGGTCGACAGCAGTTT TTCTGCTAAGGCCGTCGTATGATCATCCATAG back to top
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