Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 6500.XP_005092035.1 |
| ProteomeId | EsuBft1020_4 |
| Protein domains | PTHR19446 |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | transposon tx1 uncharacterized 149 kda protein os:xenopus laevis pe:3 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 33208|Metazoa |
| Length | 512 |
| Evalue | 2.33e-29 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Ribonuclease H protein |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1020_4a-0001 ID=EsuBft1020_4a-0001|Name=EsuBft1020_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=512bp|location=Sequence derived from alignment at Scaffold_581:147698..148209+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GATGCTGTACAAAAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGA
TTTCGCTACTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCAAC
CGTCTAAGCGCCTTCTGCGAAGTCAACAACATCCTCCCGGAGGAACAGTG
CGGATTTCGACCCGGGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCC
GCCTCCAGGAGCTTGGTCGGAGAAAGAAAATACCGCGCAATATGTGCTTC
GTCGACTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAA
GGTGCTGGCCAGGGCCGGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAT back to topprotein sequence of EsuBft1020_4a-0001 >EsuBft1020_4 ID=EsuBft1020_4|Name=EsuBft1020_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=108bp
MLYKKGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEVNNILPEEQC
GFRPGRSTVDMLFVVRRLQELGRRKKIPRNMCFVDLNKAYDSVDREMLWK
VLARAGXX back to topmRNA from alignment at Scaffold_581:147698..148209+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1020_4a-0001 ID=EsuBft1020_4a-0001|Name=EsuBft1020_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=512bp|location=Sequence derived from alignment at Scaffold_581:147698..148209+ (Ectocarpus subulatus male Bft15b)
GATGCTGTACAAAAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGA
TTTCGCTACTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCAAC
CGTCTAAGCGCCTTCTGCGAAGTCAACAACATCCTCCCGGAGGAACAGTG
CGGATTTCGACCCGGGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCC
GCCTCCAGGAGCTTGGTCGGAGAAAGAAAATACCGCGCAATATGTGCTTC
GTCGACTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAA
GGTGCTGGCCAGGGCCGGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAT back to topCoding sequence (CDS) from alignment at Scaffold_581:147698..148209+ >EsuBft1020_4a-0001 ID=EsuBft1020_4a-0001|Name=EsuBft1020_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=324bp|location=Sequence derived from alignment at Scaffold_581:147698..148209+ (Ectocarpus subulatus male Bft15b)
ATGCTGTACAAAAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGAT
TTCGCTACTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCAACC
GTCTAAGCGCCTTCTGCGAAGTCAACAACATCCTCCCGGAGGAACAGTGC
GGATTTCGACCCGGGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCCG
CCTCCAGGAGCTTGGTCGGAGAAAGAAAATACCGCGCAATATGTGCTTCG
TCGACTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAG
GTGCTGGCCAGGGCCGGGATNNNN back to top
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