EsuBft555_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft555_11a-0001
Unique Name	EsuBft555_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_581	contig	Scaffold_581:102478..104247 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LEE7
ProteomeId	EsuBft555_11
Protein domains	PTHR24123
Protein domains	IPR020683
Protein domains	IPR002110
Owner	apollo_admin@sb-roscoff.fr
Note	ankyrin-3 os:homo sapiens gn:ank3 pe:1 sv:3 [Automatic annotation]
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	1770
Hectar predicted targeting category	other localisation
Evalue	1.82e-153
EggNOG OGs	COG0666@1\|root,KOG4177@2759\|Eukaryota
Ec32 ortholog description	Ankyrin-repeat protein similar to EsV-1-21
Ec32 ortholog	Ec-00_002020.1
Date last modified	2016-06-14
Date creation	2016-06-14
Description	spectrin binding
COG category	I

Cross References

External references for this mRNA


Database	Accession
GO	0032414
GO	0008092
GO	0048193
GO	0086070
GO	0033365
GO	0030054
GO	0030674
GO	0030016
GO	0006886
GO	0007399
GO	0045202
GO	0086019
GO	0043266
GO	2000021
GO	0019899
GO	0043270
GO	0051924
GO	0032386
GO	0043231
GO	0032989
GO	0005515
GO	0005856
GO	0098590
GO	0048468
GO	0007165
GO	0090002
GO	0086004
GO	0044304
GO	0086001
GO	0044449

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft555_11a	EsuBft555_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_581 102478..104247 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_11a-0001-exon	EsuBft555_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_581 102478..104247 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_11a-0001-exon	agat-five_prime_utr-11625	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_581 102478..102497 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_11a-0001-cds	EsuBft555_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_581 102498..103949 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_11a-0001-exon	agat-three_prime_utr-18311	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_581 103950..104247 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_11a-0001	EsuBft555_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_581 102498..103949 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_581:102478..104247+
coding sequence from alignment at Scaffold_581:102478..104247+

spliced messenger RNA

>EsuBft555_11a-0001 ID=EsuBft555_11a-0001|Name=EsuBft555_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1770bp|location=Sequence derived from alignment at Scaffold_581:102478..104247+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCTAGCATCAGCAGGATGGACACCAGCGGTCGCACTCCCCTCCAT
TTAGCGTCCGGCGGAAACTCCTGCGACATAATAAACACGCTCTTGGAGGG
CGGGGCTAACGAGAATTCGCTTTCCGGTGATGGCGAAGCGCCGCTTCACG
TGGCAGCGGCGTGCGGTAGCGTTGCTGCGACACAAGCCCTGCTGGCTGCT
GGCGCCAGTGTCGACCTCCCGTTTGACAAAGATGGCTCGTCACCTCTGTC
AATAGCCGCGTTGAACGGGCACGCCGACGTGGCCAAAGTTTTGATTCGTC
ACGAAGCGGGTTTGGGCGCGACGGACAGTGAGGGCTCGACTGCTTTGCAC
CAGGCAGCGTCCAAGAACCATGCTGTTGTTGTTGACGTGCTTATCAAGGC
TGGGGCGAGTTTGGAAGTGCTGGACAAGTCCTCCAGGACGCCTCTGGTCG
TGGCCTTCGACGACTTCGGCAGGCGTGCAAGGAAAGATGGGCAGACCACT
ATAGTTACCCTGTTGAAGCATGGGGCCAACGCAAATGTGCAGACCGGCGG
TTATTCACAGCTTTCGTGCGCAGCGCACGCTAACTCCCTTCCAGTAGTTG
AAGCCCTCCTCGCCGCTGGTGCGGAGGTAAACGCTGTCCGCAAGTGGACT
GGGTGCACGGCACTGCATGTGTCCTCGGAGCATCAGCACCCCGCCGTACT
GGAGGAACTACTTCGGAACGCGGCGGACACGGAGATATACGCAATGGGTG
GCCAGACTCCGTTGCACGTAGCCGCTTACGGTGGCCATGTGCACCCGATC
AATTTTCTCATCGACGGAGGCGCTATGGTCAGTGCTAAAGATGAGGACGG
CCGGACACCTCTTCACGTTGCTTGTTCGAAACTGGACTGCTCAGCTATAC
ACGCCCTCCTGAGAAGCGGCTCCGACATTCAAGCGGTGGACAACAGCCGA
TGTTCTCCCCTTCACCACGCAGTGAACCGCATCGAGCATTGGGATTCTGC
AGCCGACGTGGCTCACGCAGTGAACCTTTTGTTGAGATGGGGTGCAGATG
AAAACGCCGTAAACTCACAAGGCAAGACCGCTCGAGAAGTTTTGCAACAA
GTCTCGTCCTTTCCTGCTCCGTTCCCGGACGACACGACGCAAGTTCAACG
CTTGCTATCAAAGGCGCCCCAGGACAAAACATGGCGTCGTCGCGGCTGGC
TAGTCTTGGGCCGCACTAGGCCCAACAGGGTAAAGCCGAAAGCGAAGAAC
GAGGGAGCAAGTACTAGAAGTTCGACACGGAACGTTCGAGCGCGGGATTC
CGCTACTGGGGCAAGGTTCAACGCTGCGGCGACGCTCGAACAGGAAGTAG
AAGGGGCCATTGCACCAAGGGATATATATGCTTCTGCTGCTGCTGGCTTG
AGCAACTTGGTGGCGGCTGTGCTTGGTTTACGCGAGGAAGATGTATTCCG
GAGTGTCGTGGGGTTCCTGTAATGTATGTCCAAGGTGTTGTACTCCTGAT
CGGTGAGTGTTTTTTTTTCTGGCGGCAATAGTAATGAAGTTACAGGCAAG
TGTTGTATACGTGCAATTTTAGTCGAGGTTGATCTCAGAAGGAGGAAAAT
GCTAATTGATTTTCAGAGTTCATTCGCATGGATGGCCAACTTGGTTAACT
TGATCGGGGTGCGAGCATACATGAGTGGAAGGAAGCTGGCGTCCATGGCG
GGTCTCCAAAATGCAGGTATCGGTAGTAAAGAAATATATAATCTTCGAGG
GTTGGGTATGGTAGCGAACC

protein sequence of EsuBft555_11a-0001

>EsuBft555_11 ID=EsuBft555_11|Name=EsuBft555_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=483bp
MDTSGRTPLHLASGGNSCDIINTLLEGGANENSLSGDGEAPLHVAAACGS
VAATQALLAAGASVDLPFDKDGSSPLSIAALNGHADVAKVLIRHEAGLGA
TDSEGSTALHQAASKNHAVVVDVLIKAGASLEVLDKSSRTPLVVAFDDFG
RRARKDGQTTIVTLLKHGANANVQTGGYSQLSCAAHANSLPVVEALLAAG
AEVNAVRKWTGCTALHVSSEHQHPAVLEELLRNAADTEIYAMGGQTPLHV
AAYGGHVHPINFLIDGGAMVSAKDEDGRTPLHVACSKLDCSAIHALLRSG
SDIQAVDNSRCSPLHHAVNRIEHWDSAADVAHAVNLLLRWGADENAVNSQ
GKTAREVLQQVSSFPAPFPDDTTQVQRLLSKAPQDKTWRRRGWLVLGRTR
PNRVKPKAKNEGASTRSSTRNVRARDSATGARFNAAATLEQEVEGAIAPR
DIYASAAAGLSNLVAAVLGLREEDVFRSVVGFL

mRNA from alignment at Scaffold_581:102478..104247+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft555_11a-0001 ID=EsuBft555_11a-0001|Name=EsuBft555_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1770bp|location=Sequence derived from alignment at Scaffold_581:102478..104247+ (Ectocarpus subulatus male Bft15b)
ATGGGGCTAGCATCAGCAGGATGGACACCAGCGGTCGCACTCCCCTCCAT
TTAGCGTCCGGCGGAAACTCCTGCGACATAATAAACACGCTCTTGGAGGG
CGGGGCTAACGAGAATTCGCTTTCCGGTGATGGCGAAGCGCCGCTTCACG
TGGCAGCGGCGTGCGGTAGCGTTGCTGCGACACAAGCCCTGCTGGCTGCT
GGCGCCAGTGTCGACCTCCCGTTTGACAAAGATGGCTCGTCACCTCTGTC
AATAGCCGCGTTGAACGGGCACGCCGACGTGGCCAAAGTTTTGATTCGTC
ACGAAGCGGGTTTGGGCGCGACGGACAGTGAGGGCTCGACTGCTTTGCAC
CAGGCAGCGTCCAAGAACCATGCTGTTGTTGTTGACGTGCTTATCAAGGC
TGGGGCGAGTTTGGAAGTGCTGGACAAGTCCTCCAGGACGCCTCTGGTCG
TGGCCTTCGACGACTTCGGCAGGCGTGCAAGGAAAGATGGGCAGACCACT
ATAGTTACCCTGTTGAAGCATGGGGCCAACGCAAATGTGCAGACCGGCGG
TTATTCACAGCTTTCGTGCGCAGCGCACGCTAACTCCCTTCCAGTAGTTG
AAGCCCTCCTCGCCGCTGGTGCGGAGGTAAACGCTGTCCGCAAGTGGACT
GGGTGCACGGCACTGCATGTGTCCTCGGAGCATCAGCACCCCGCCGTACT
GGAGGAACTACTTCGGAACGCGGCGGACACGGAGATATACGCAATGGGTG
GCCAGACTCCGTTGCACGTAGCCGCTTACGGTGGCCATGTGCACCCGATC
AATTTTCTCATCGACGGAGGCGCTATGGTCAGTGCTAAAGATGAGGACGG
CCGGACACCTCTTCACGTTGCTTGTTCGAAACTGGACTGCTCAGCTATAC
ACGCCCTCCTGAGAAGCGGCTCCGACATTCAAGCGGTGGACAACAGCCGA
TGTTCTCCCCTTCACCACGCAGTGAACCGCATCGAGCATTGGGATTCTGC
AGCCGACGTGGCTCACGCAGTGAACCTTTTGTTGAGATGGGGTGCAGATG
AAAACGCCGTAAACTCACAAGGCAAGACCGCTCGAGAAGTTTTGCAACAA
GTCTCGTCCTTTCCTGCTCCGTTCCCGGACGACACGACGCAAGTTCAACG
CTTGCTATCAAAGGCGCCCCAGGACAAAACATGGCGTCGTCGCGGCTGGC
TAGTCTTGGGCCGCACTAGGCCCAACAGGGTAAAGCCGAAAGCGAAGAAC
GAGGGAGCAAGTACTAGAAGTTCGACACGGAACGTTCGAGCGCGGGATTC
CGCTACTGGGGCAAGGTTCAACGCTGCGGCGACGCTCGAACAGGAAGTAG
AAGGGGCCATTGCACCAAGGGATATATATGCTTCTGCTGCTGCTGGCTTG
AGCAACTTGGTGGCGGCTGTGCTTGGTTTACGCGAGGAAGATGTATTCCG
GAGTGTCGTGGGGTTCCTGTAATGTATGTCCAAGGTGTTGTACTCCTGAT
CGGTGAGTGTTTTTTTTTCTGGCGGCAATAGTAATGAAGTTACAGGCAAG
TGTTGTATACGTGCAATTTTAGTCGAGGTTGATCTCAGAAGGAGGAAAAT
GCTAATTGATTTTCAGAGTTCATTCGCATGGATGGCCAACTTGGTTAACT
TGATCGGGGTGCGAGCATACATGAGTGGAAGGAAGCTGGCGTCCATGGCG
GGTCTCCAAAATGCAGGTATCGGTAGTAAAGAAATATATAATCTTCGAGG
GTTGGGTATGGTAGCGAACC

Coding sequence (CDS) from alignment at Scaffold_581:102478..104247+

>EsuBft555_11a-0001 ID=EsuBft555_11a-0001|Name=EsuBft555_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1452bp|location=Sequence derived from alignment at Scaffold_581:102478..104247+ (Ectocarpus subulatus male Bft15b)
ATGGACACCAGCGGTCGCACTCCCCTCCATTTAGCGTCCGGCGGAAACTC
CTGCGACATAATAAACACGCTCTTGGAGGGCGGGGCTAACGAGAATTCGC
TTTCCGGTGATGGCGAAGCGCCGCTTCACGTGGCAGCGGCGTGCGGTAGC
GTTGCTGCGACACAAGCCCTGCTGGCTGCTGGCGCCAGTGTCGACCTCCC
GTTTGACAAAGATGGCTCGTCACCTCTGTCAATAGCCGCGTTGAACGGGC
ACGCCGACGTGGCCAAAGTTTTGATTCGTCACGAAGCGGGTTTGGGCGCG
ACGGACAGTGAGGGCTCGACTGCTTTGCACCAGGCAGCGTCCAAGAACCA
TGCTGTTGTTGTTGACGTGCTTATCAAGGCTGGGGCGAGTTTGGAAGTGC
TGGACAAGTCCTCCAGGACGCCTCTGGTCGTGGCCTTCGACGACTTCGGC
AGGCGTGCAAGGAAAGATGGGCAGACCACTATAGTTACCCTGTTGAAGCA
TGGGGCCAACGCAAATGTGCAGACCGGCGGTTATTCACAGCTTTCGTGCG
CAGCGCACGCTAACTCCCTTCCAGTAGTTGAAGCCCTCCTCGCCGCTGGT
GCGGAGGTAAACGCTGTCCGCAAGTGGACTGGGTGCACGGCACTGCATGT
GTCCTCGGAGCATCAGCACCCCGCCGTACTGGAGGAACTACTTCGGAACG
CGGCGGACACGGAGATATACGCAATGGGTGGCCAGACTCCGTTGCACGTA
GCCGCTTACGGTGGCCATGTGCACCCGATCAATTTTCTCATCGACGGAGG
CGCTATGGTCAGTGCTAAAGATGAGGACGGCCGGACACCTCTTCACGTTG
CTTGTTCGAAACTGGACTGCTCAGCTATACACGCCCTCCTGAGAAGCGGC
TCCGACATTCAAGCGGTGGACAACAGCCGATGTTCTCCCCTTCACCACGC
AGTGAACCGCATCGAGCATTGGGATTCTGCAGCCGACGTGGCTCACGCAG
TGAACCTTTTGTTGAGATGGGGTGCAGATGAAAACGCCGTAAACTCACAA
GGCAAGACCGCTCGAGAAGTTTTGCAACAAGTCTCGTCCTTTCCTGCTCC
GTTCCCGGACGACACGACGCAAGTTCAACGCTTGCTATCAAAGGCGCCCC
AGGACAAAACATGGCGTCGTCGCGGCTGGCTAGTCTTGGGCCGCACTAGG
CCCAACAGGGTAAAGCCGAAAGCGAAGAACGAGGGAGCAAGTACTAGAAG
TTCGACACGGAACGTTCGAGCGCGGGATTCCGCTACTGGGGCAAGGTTCA
ACGCTGCGGCGACGCTCGAACAGGAAGTAGAAGGGGCCATTGCACCAAGG
GATATATATGCTTCTGCTGCTGCTGGCTTGAGCAACTTGGTGGCGGCTGT
GCTTGGTTTACGCGAGGAAGATGTATTCCGGAGTGTCGTGGGGTTCCTGT
AA