EsuBft555_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft555_7a-0001
Unique NameEsuBft555_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_581contigScaffold_581:91124..94276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft555_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length146
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft555_7aEsuBft555_7aEctocarpus subulatus male Bft15bgeneScaffold_581 91124..94276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft555_7a-0001EsuBft555_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_581 93285..94276 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft555_7a-0001-exonagat-exon-37849Ectocarpus subulatus male Bft15bexonScaffold_581 91124..92293 -
EsuBft555_7a-0001-exonagat-exon-37848Ectocarpus subulatus male Bft15bexonScaffold_581 93186..93288 -
EsuBft555_7a-0001-exonEsuBft555_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_581 94089..94276 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft555_7a-0001-exonagat-three_prime_utr-18318Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_581 91124..92293 -
EsuBft555_7a-0001-exonagat-three_prime_utr-18319Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_581 93186..93284 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft555_7a-0001-cdsEsuBft555_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_581 93285..93288 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft555_7a-0001 ID=EsuBft555_7a-0001|Name=EsuBft555_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1461bp|location=Sequence derived from alignment at Scaffold_581:91124..94276- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGCTGCAGGTGAAGCGGCGGACTACCTGTCACCATATAATCGGTC
GGTCGGCGGGGATTTGACGATGGATCGACATCGGCATACGACTAGAGTGC
AAGTGTTCGCGGGGTCAAGAGCGGCCAAGATGATGTTGTGGGAGGCTCTG
TTGGATACGGGAAGTCCGGCATCGTTTGTACAAGAAAGGTAGCGTTCAGG
CGGTTGTGGCAGAGGGTGCCTCGGCACATTCGAGACGTCCATTTCGACTT
CAATGCCAAACTGTGGGAGCCGGAGGACATTGGCAAACTAGGGACGGGGA
AGAACACGTGCGCGACGTGGAGAGGTTTTTCGAGCGCATGGTCAAGTTCA
ACCTGAAACTGGCACCCAAGAAGACGAACCTGGGGGTGAAGGTGGTGACG
TTCTTGGGACATCAAGTCACGACGGAAGGGATCGGGCCAGGCCCGGACAA
GGTCAGACCGCTGCGTGAAGTGCCAATGCCCACTAATGTTAGCCAGTTGC
GATCGTTGTTGGGGTCCTTGTCGTGCTATTGAAGTTCCTGAAGAACATGT
CGGCGAAATTGAAACCGATCAATGCGACGCTGAAAAGGGGGGCGAAGTTT
GCGTTCACGGCTGATCATGTGGCAGTAGTGAGGAAGTTTANAGACGAACC
TGGGGGTGAAGGTGGTGACGTTCTTGGGACATCAAGTCACGACGGAAGGG
ATCGGGCCAGGCCCGGACAAGGTCAGACCGCTGCGTGAAGTGCCAATGCC
CACTAATGTTAGCCAGTTGCGATCGTTGTTGGGGTCCTTGTCGTGCTATT
GAAGTTCCTGAAGAACATGTCGGCGAAATTGAAACCGATCAATGCGACGC
TGAAAAGGGGGGCGAAGTTTGCGTTCACGGCTGATCATGTGGCAGTAGTG
AGGAAGTTTATGGATATTCTGTCTGGTCCTGAAGTTTTGGCATTTCCGTG
TTATGAGGGTGCGATCTCGGGAGAGCGGCCGTTTCGATTAACCGCTGATG
CGTCGATTTCGGGCTTGGGAGCCGTAATCGAGCAAGAGCAACGAGATGGA
AGTATTAGACCGCTATGCTTTTTGAGCAGATCAACATTCGCGAATGAAAC
GAGATGGAGTCCGACTGAGCTTGAAGCGGGCGCAATAGTGTGGGCGATAA
AGAAGAACCGGACACTATTTTATGGCATCCCCTTTGAAGTGTACAGTGAC
CATCAACCCTTGCGGAATTTGGGGAGTTTGGCAGAGAAAAATAATTGCGT
ACAGAGGTGGTATGACTTCCTGTCAGCGTACACATATGAACTTAAGTATC
GACCAGGGCGAGAGAATGCAAATGCCGATTTGATGTCACGGTTGCCATTG
CCTGCGACGAAAGAGGATGAGGCACCAGATGTCAGGCTAACTGATGCCGT
CTGATCTCGATCTTTATATGATAGGTGCGAGCGGGGTGCTACCTTCGCGA
TTGGGTCCGGT
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protein sequence of EsuBft555_7a-0001

>EsuBft555_7 ID=EsuBft555_7|Name=EsuBft555_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=63bp
MFAAGEAADYLSPYNRSVGGDLTMDRHRHTTRVQVFAGSRAAKMMLWEAL
LDTGSPASFVQER
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mRNA from alignment at Scaffold_581:91124..94276-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft555_7a-0001 ID=EsuBft555_7a-0001|Name=EsuBft555_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3153bp|location=Sequence derived from alignment at Scaffold_581:91124..94276- (Ectocarpus subulatus male Bft15b)
ATGTTTGCTGCAGGTGAAGCGGCGGACTACCTGTCACCATATAATCGGTC
GGTCGGCGGGGATTTGACGATGGATCGACATCGGCATACGACTAGAGTGC
AAGTGTTCGCGGGGTCAAGAGCGGCCAAGATGATGTTGTGGGAGGCTCTG
TTGGATACGGGAAGTCCGGCATCGTTTGTACAAGAAAGGTGTGTGCAAAA
GATGTTGGCATGTGCTTAAGCTTCAACTGATAGCATTGAAACGGGGCTGA
ACAAGAAATGGGGTGGGTTCCATGGGGTGCCATTGGTTACAGATGGAACG
ATTCAATATTGAAATGTGGAAAGGCGGGAAATCAGCGCCGGTTCATTTCG
GTACACCGACGGTACGGACGAGTGTGTATGCGTAAATTGTGCCAGACTCG
GCCATGGGACATGATCTGATACTAGGGAGGGATAGCTGGGCTTATTTTCA
AGTTCGCAGCTTCCAAGACGTGTCAGACACAGAAACAATTGTCACCTTTG
TCGGTGCAAATACTGATAAGGTGGCAGGAGATCACCGCTTTGATAAATGG
GGCGGTAACGCGGTTGGTATTGTGGAAACGGAAGGTGATGGGAAGGTGGT
GGTGAAATCTGATGGTAGTAGACGATGGCTTCCAAATGCGATGTCATGGG
TGGAGGTAAAATTGACCAACCTAGATGGCAGTGACGCTGCGGTGGTGACG
TACCGTGTGCAGTTTGGGAAGAAGTGGTTCCCGCAGGAAGCGTTAGTCGA
AAATGGCACGTCTGAAATTCCTTTAAGAAGAGTGGGGGAAAGCTCGTGTC
TGGTGAAACCAAACGATATTTTGGGGTACGGTGGTGAACCCCTGGAGGTG
GTATATCTGGATGATGCTCGTTTGGTGGAAAATGAGGAATTCAAAAGTGT
ATTTGCGGTTCAGGAGGGTGGAGAGGCTGACATGCCTAACGACGAACCTC
CCGCTGATGTTATGTCTTTTTTGAATGGGGCGCCACAGGTAGCGTTCAGG
CGGTTGTGGCAGAGGGTGCCTCGGCACATTCGAGACGTCCATTTCGACTT
CAATGCCAAACTGTGGGAGCCGGAGGACATTGGCAAACTAGGTGATCTAT
TGTGCAAGTTTGAGCATCGTTTTTCGAAGGGTGGTTCGGATTTAGGGCGA
GTGACGGTGGATCCGTTTCGAATCATTTTGAAGTCGGGGGCACAGCCAGT
GCGGCAGAGGCCATATCGCTGTTCGCCGGTTATGAACGAAAAGGCGCAGA
TCGAAATCGACAAATTGCTGTTGAAGGGTGTGTTGCGGAGATCGTATAGC
AATTGGGCGAGTCCGCTGGTGGTAGTCGCGAAGGCTAACGGTGGCGTACG
GTTGACGGTCAACTACAAGCGCATCAATAAAATGAGTGTAATCCCGAAAT
TGCCCATTCCGATAGTGGAGGATATTTTGGCGGAATTGGACAAATCGAAA
ATCTTCAGTACGCTGGATTTGGTCAGAGGGTTTTACCAGTGCAGTATTGA
GGAGGAGAGCATTCCGATCACTGCTGTTATCACGTCTACGGGTATGCCGG
GGTGGACGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGTTGAACGAATTTTTATCCGTGACGCAAGGTCGCAGTAGTAGTCTT
GGGTGGTTCCATTCGGTGATGGCCAGAGAATGTAACGGACTGGAACGTGT
GCTGTTTATCGATGACGTGATCGTTTTTTCCAGGGACGGGGAAGAACACG
TGCGCGACGTGGAGAGGTTTTTCGAGCGCATGGTCAAGTTCAACCTGAAA
CTGGCACCCAAGAAGACGAACCTGGGGGTGAAGGTGGTGACGTTCTTGGG
ACATCAAGTCACGACGGAAGGGATCGGGCCAGGCCCGGACAAGGTCAGAC
CGCTGCGTGAAGTGCCAATGCCCACTAATGTTAGCCAGTTGCGATCGTTG
TTGGGGTCCTTGTCGTGCTATTGAAGTTCCTGAAGAACATGTCGGCGAAA
TTGAAACCGATCAATGCGACGCTGAAAAGGGGGGCGAAGTTTGCGTTCAC
GGCTGATCATGTGGCAGTAGTGAGGAAGTTTANAGACGAACCTGGGGGTG
AAGGTGGTGACGTTCTTGGGACATCAAGTCACGACGGAAGGGATCGGGCC
AGGCCCGGACAAGGTCAGACCGCTGCGTGAAGTGCCAATGCCCACTAATG
TTAGCCAGTTGCGATCGTTGTTGGGGTCCTTGTCGTGCTATTGAAGTTCC
TGAAGAACATGTCGGCGAAATTGAAACCGATCAATGCGACGCTGAAAAGG
GGGGCGAAGTTTGCGTTCACGGCTGATCATGTGGCAGTAGTGAGGAAGTT
TATGGATATTCTGTCTGGTCCTGAAGTTTTGGCATTTCCGTGTTATGAGG
GTGCGATCTCGGGAGAGCGGCCGTTTCGATTAACCGCTGATGCGTCGATT
TCGGGCTTGGGAGCCGTAATCGAGCAAGAGCAACGAGATGGAAGTATTAG
ACCGCTATGCTTTTTGAGCAGATCAACATTCGCGAATGAAACGAGATGGA
GTCCGACTGAGCTTGAAGCGGGCGCAATAGTGTGGGCGATAAAGAAGAAC
CGGACACTATTTTATGGCATCCCCTTTGAAGTGTACAGTGACCATCAACC
CTTGCGGAATTTGGGGAGTTTGGCAGAGAAAAATAATTGCGTACAGAGGT
GGTATGACTTCCTGTCAGCGTACACATATGAACTTAAGTATCGACCAGGG
CGAGAGAATGCAAATGCCGATTTGATGTCACGGTTGCCATTGCCTGCGAC
GAAAGAGGATGAGGCACCAGATGTCAGGCTAACTGATGCCGTCTGATCTC
GATCTTTATATGATAGGTGCGAGCGGGGTGCTACCTTCGCGATTGGGTCC
GGT
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Coding sequence (CDS) from alignment at Scaffold_581:91124..94276-

>EsuBft555_7a-0001 ID=EsuBft555_7a-0001|Name=EsuBft555_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=192bp|location=Sequence derived from alignment at Scaffold_581:91124..94276- (Ectocarpus subulatus male Bft15b)
ATGTTTGCTGCAGGTGAAGCGGCGGACTACCTGTCACCATATAATCGGTC
GGTCGGCGGGGATTTGACGATGGATCGACATCGGCATACGACTAGAGTGC
AAGTGTTCGCGGGGTCAAGAGCGGCCAAGATGATGTTGTGGGAGGCTCTG
TTGGATACGGGAAGTCCGGCATCGTTTGTACAAGAAAGGTAG
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