EsuBft555_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft555_5a-0001
Unique Name	EsuBft555_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_581	contig	Scaffold_581:74024..77060 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FI08
ProteomeId	EsuBft555_5
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	286
Evalue	7.29e-85
EggNOG OGs	2DCSR@1\|root,2S5KN@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft555_5a	EsuBft555_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_581 74024..77060 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_5a-0001-exon	EsuBft555_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_581 74024..74576 +
EsuBft555_5a-0001-exon	agat-exon-37840	Ectocarpus subulatus male Bft15b	exon	Scaffold_581 74752..77060 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_5a-0001-exon	agat-five_prime_utr-11630	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_581 74024..74044 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_5a-0001-cds	EsuBft555_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_581 74045..74576 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_5a-0001-exon	agat-three_prime_utr-18316	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_581 74772..77060 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_5a-0001	EsuBft555_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_581 74045..74771 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_581:74024..77060+
coding sequence from alignment at Scaffold_581:74024..77060+

spliced messenger RNA

>EsuBft555_5a-0001 ID=EsuBft555_5a-0001|Name=EsuBft555_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2862bp|location=Sequence derived from alignment at Scaffold_581:74024..77060+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAGGTGAGGTCCATTCTTATCATGGACAACTTGCACGCGCAGACCACGGA
CGAGTTCAAGGAGTATCTTGCGAGGCACTGCAACACTCTCGCCTGGTATG
GCCCTTCGGAGTGCACGGACGAGGTGCAGCCAGTTGATGCAGGAGCCGGA
CGATTTATCAAGGTGGAAGTCGGGAGGCAGATGGACATATGGTTCGAGCA
GTCGGACAACCTCGAGAGGTGGGAAACCGCGTCGCTGACAGCTTCTGATC
GGCGCGTCCTGATCACTCCGTGGATGGGAGCGGCCATGGCAAGACTCAAC
AGCCAACAGGCGTACCGATACCGTCTTTTCGAAAAGTGCGGGATGGTTAT
GACCGTGGACGGCTGGGGCGATGATCGAATCACCTTGGAGGGTTTGGACA
AGCCGTATACCTTCGCTAACGATGAAGACAGTAGCGACGACGAACAAGGT
TCGGAGAACGGCAACGATGAGCCTGAGGGGCGGGCGGAGGAGGGCGATGG
AGGACGTGAGACGCTCATGGAGGGCGTTGACTCCAGCGATGAAGACGACG
GCGACATCTCTCAACCCCAGNNNNNNNNNNNNNNNNNNNNNATTCAAGAA
GCTAACCCGTTGCTCTTGACAGATTGCTTTTGCGGCGTGGAGTGCTCGTT
AGGCTGGGCATGGGGTGGTTTGGAGGGCTGATCACTGAACAATCTCAGAA
GGACACTCGCCACCTGTACGACTACTGTGTGCAGCTGGAGCTAGACCAGA
GTATGCGCAAGATGAAGTTGCCCTCAGACAAGTACAGCGGAGATTCGGAT
GCGGCAGTAGGCTCCTGGGTTTTGCTTGAGAGCATTAGTAGATCAGGAAG
GGTACGCAGGACCAACGTCACCCTTGTGGACCAAGAAGGTTGACAGTTGC
TGCTCCATGCCTCGGTATTTTCTTGTATCGACAGCAGTACTAGTCTCGTG
GTTGACAGCCGACAACATAGCAAGTGATGTTAAAATACTGTAAGAACAAG
AACGCCCCTTTCTGGAGAAGAATGGACGACGAAAAAAGAACTTGGTAAAT
AAGAACTGGTGCTCGGGTTGTTGCTGTCTTCACATTAACAACCATCCCGG
TCTCTCTATCCAGTACCTCCTTCTGTCTCAATCTCTCCGTACATTTTTGG
GCCCGCTGTCTCCTCGTTTGATGGCTCGTTGTCGGCTGGCCTTCTCCTCG
CCCTTGTGCCAAGAGGCCATAAACCTGTCAGCTCCCTGTAGCACCCCCGC
GTGCCACGGTACCCCCCGGGTTAGGGCAGCCAATAAGAACTGAACCTCGC
CCAATATAGGAGGTTCTTAAGTGCGGGCCGGCACTGTAGCGGCAAAAAGA
TGTGCGGGGGAACTTGGCGAAACATGATTTTTTTTTCTTCAGCAGAACTT
CGATTTGTTGTGGCACACTACAGAGCTGCTGATACCTCGCGTACGAACGC
ACAGCAGTCGATACTGATGCCTCAGACCTTGCCAGAACTCAACTGTCTCA
TCCGTGTTGAGCACGCGGTCCGCTGTGAGCTTGTTCTCCACGATATACGC
TCCCCGTGCCTTGTAGAAATCTTTTGAGCCGAGGCTCATCGTTTTTGTTG
ATCCGGTTTGCCTCGTAGATGTGAGTTGTTCGCTTCGACAACGCCGGGTG
CCTCGCCATGAAGCCGTTAAGCCAGCTGCGCCCCGGGCCTTTATCTGGGT
CCCAGGGCACCGGGCGTCCGTTGAGGCAGAGCACTCGCACCGTATCTATG
AGCTGCTGCCGACCGCATCAATGAGCTGCTGCCGACCGAAACTAAGAAAT
TGTCGAAAAATAGCGTAGATCAACGCATCTTCCACCGCATCTTCTTCCGC
CTTGCTCAGCACAGTCTCGGGGCCAACCCTCGCATCCATGGCCATAGCAC
CGCTCAAACGTCGCGAGAGCGCGTCCTTGTTCACCCCGTAGGCCTTGGCA
GCAGCCCTGAGAGACAACTGACCACTGCGGACCGCATCGCAAGCCTTCTG
CCCCTGTTGTGGGTCTACTCTTGCCCGGCCCATGCTCGCAATGCTTAGCA
TCAGACCCGCCACAGGGATGAAAATGACCCGCATCACGGGTGTGGGAGGG
CGTGTTGCTGTATCTTGTGGGTGCGTGACCCGATCGGGACGCTGAAGTGC
TCAAACGAAAGCTAACGGAACGCATGAAAATTTGAAAAAAAAATCAGGGG
TCCCCGCGGATTGTGAGCGGAGATAAATGCACTTGTGCGTCTATGTGTCT
GTCTCTTAGTGGGGGGTGTCTCTTTATTGGTACCTTTACTCCAGACTAAT
AATTTCACTCGATTTTTTTTTGCGTGCGTTGTTTTTTTTAGTTATTTCTC
GAAAACCCTAACCAATCTGAGACTTCCGTCCCAACCATTTCGCCCGTTCT
GACCATGGTCCTACACGGGTCACGACAGCATAAAAGCACACTCTCTGTTT
CGCTAGGCTTCGGCGCAGCAGCAACCGGGGACAACCACGAATGAGCCTAA
AAAGGCCAAAGACCAAGATCCTGAAAAAAAGACACACAGAATTGTTGTTG
TTGTTGTCTTCACATTAAACCGTATGTCAGTTGCTAAATGCCAAAATCTA
GCAAAGACTCTCAGCCCGTGGTCACGAAAGTGCTAGAGCCATCTGAGGAT
CTAAAGAACACGCACACATATAACGAGAAAAAGGTATCCAAGAGCCCGAA
GTGGTACACCTAAATCCCTGCAGCACCGTATGCGTGCCCAAAAACTGAAC
TGCACGTCCGTCCCACCGTTCGACTACAGTAGCATCACCCCCTCCCTGTC
CCACTCTATACCAAAACGGAAGATTGCCGACTACAGCATACTGCTGTCTG
AAGTGCTGTCTG

protein sequence of EsuBft555_5a-0001

>EsuBft555_5 ID=EsuBft555_5|Name=EsuBft555_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=184bp
MDNLHAQTTDEFKEYLARHCNTLAWYGPSECTDEVQPVDAGAGRFIKVEV
GRQMDIWFEQSDNLERWETASLTASDRRVLITPWMGAAMARLNSQQAYRY
RLFEKCGMVMTVDGWGDDRITLEGLDKPYTFANDEDSSDDEQGSENGNDE
PEGRAEEGDGGRETLMEGVDSSDEDDGDISQPQX

mRNA from alignment at Scaffold_581:74024..77060+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft555_5a-0001 ID=EsuBft555_5a-0001|Name=EsuBft555_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3037bp|location=Sequence derived from alignment at Scaffold_581:74024..77060+ (Ectocarpus subulatus male Bft15b)
AAGGTGAGGTCCATTCTTATCATGGACAACTTGCACGCGCAGACCACGGA
CGAGTTCAAGGAGTATCTTGCGAGGCACTGCAACACTCTCGCCTGGTATG
GCCCTTCGGAGTGCACGGACGAGGTGCAGCCAGTTGATGCAGGAGCCGGA
CGATTTATCAAGGTGGAAGTCGGGAGGCAGATGGACATATGGTTCGAGCA
GTCGGACAACCTCGAGAGGTGGGAAACCGCGTCGCTGACAGCTTCTGATC
GGCGCGTCCTGATCACTCCGTGGATGGGAGCGGCCATGGCAAGACTCAAC
AGCCAACAGGCGTACCGATACCGTCTTTTCGAAAAGTGCGGGATGGTTAT
GACCGTGGACGGCTGGGGCGATGATCGAATCACCTTGGAGGGTTTGGACA
AGCCGTATACCTTCGCTAACGATGAAGACAGTAGCGACGACGAACAAGGT
TCGGAGAACGGCAACGATGAGCCTGAGGGGCGGGCGGAGGAGGGCGATGG
AGGACGTGAGACGCTCATGGAGGGCGTTGACTCCAGCGATGAAGACGACG
GCGGTAAGTTTGTTTTGCACAAAACCAACTCTTCATCTTCTTTTTGTTGA
TGACGATGTCCTTCATGTTGACGTTAGCTTGTTTCCGCGCACGGCTACAC
TCAAATTATGATAAGTTCAGGTTGAGTTTGGCGACGTGACACCCCAACTT
CTTGTGTTTCCCGTTGCCTCGTTCGCAGACATCTCTCAACCCCAGNNNNN
NNNNNNNNNNNNNNNNATTCAAGAAGCTAACCCGTTGCTCTTGACAGATT
GCTTTTGCGGCGTGGAGTGCTCGTTAGGCTGGGCATGGGGTGGTTTGGAG
GGCTGATCACTGAACAATCTCAGAAGGACACTCGCCACCTGTACGACTAC
TGTGTGCAGCTGGAGCTAGACCAGAGTATGCGCAAGATGAAGTTGCCCTC
AGACAAGTACAGCGGAGATTCGGATGCGGCAGTAGGCTCCTGGGTTTTGC
TTGAGAGCATTAGTAGATCAGGAAGGGTACGCAGGACCAACGTCACCCTT
GTGGACCAAGAAGGTTGACAGTTGCTGCTCCATGCCTCGGTATTTTCTTG
TATCGACAGCAGTACTAGTCTCGTGGTTGACAGCCGACAACATAGCAAGT
GATGTTAAAATACTGTAAGAACAAGAACGCCCCTTTCTGGAGAAGAATGG
ACGACGAAAAAAGAACTTGGTAAATAAGAACTGGTGCTCGGGTTGTTGCT
GTCTTCACATTAACAACCATCCCGGTCTCTCTATCCAGTACCTCCTTCTG
TCTCAATCTCTCCGTACATTTTTGGGCCCGCTGTCTCCTCGTTTGATGGC
TCGTTGTCGGCTGGCCTTCTCCTCGCCCTTGTGCCAAGAGGCCATAAACC
TGTCAGCTCCCTGTAGCACCCCCGCGTGCCACGGTACCCCCCGGGTTAGG
GCAGCCAATAAGAACTGAACCTCGCCCAATATAGGAGGTTCTTAAGTGCG
GGCCGGCACTGTAGCGGCAAAAAGATGTGCGGGGGAACTTGGCGAAACAT
GATTTTTTTTTCTTCAGCAGAACTTCGATTTGTTGTGGCACACTACAGAG
CTGCTGATACCTCGCGTACGAACGCACAGCAGTCGATACTGATGCCTCAG
ACCTTGCCAGAACTCAACTGTCTCATCCGTGTTGAGCACGCGGTCCGCTG
TGAGCTTGTTCTCCACGATATACGCTCCCCGTGCCTTGTAGAAATCTTTT
GAGCCGAGGCTCATCGTTTTTGTTGATCCGGTTTGCCTCGTAGATGTGAG
TTGTTCGCTTCGACAACGCCGGGTGCCTCGCCATGAAGCCGTTAAGCCAG
CTGCGCCCCGGGCCTTTATCTGGGTCCCAGGGCACCGGGCGTCCGTTGAG
GCAGAGCACTCGCACCGTATCTATGAGCTGCTGCCGACCGCATCAATGAG
CTGCTGCCGACCGAAACTAAGAAATTGTCGAAAAATAGCGTAGATCAACG
CATCTTCCACCGCATCTTCTTCCGCCTTGCTCAGCACAGTCTCGGGGCCA
ACCCTCGCATCCATGGCCATAGCACCGCTCAAACGTCGCGAGAGCGCGTC
CTTGTTCACCCCGTAGGCCTTGGCAGCAGCCCTGAGAGACAACTGACCAC
TGCGGACCGCATCGCAAGCCTTCTGCCCCTGTTGTGGGTCTACTCTTGCC
CGGCCCATGCTCGCAATGCTTAGCATCAGACCCGCCACAGGGATGAAAAT
GACCCGCATCACGGGTGTGGGAGGGCGTGTTGCTGTATCTTGTGGGTGCG
TGACCCGATCGGGACGCTGAAGTGCTCAAACGAAAGCTAACGGAACGCAT
GAAAATTTGAAAAAAAAATCAGGGGTCCCCGCGGATTGTGAGCGGAGATA
AATGCACTTGTGCGTCTATGTGTCTGTCTCTTAGTGGGGGGTGTCTCTTT
ATTGGTACCTTTACTCCAGACTAATAATTTCACTCGATTTTTTTTTGCGT
GCGTTGTTTTTTTTAGTTATTTCTCGAAAACCCTAACCAATCTGAGACTT
CCGTCCCAACCATTTCGCCCGTTCTGACCATGGTCCTACACGGGTCACGA
CAGCATAAAAGCACACTCTCTGTTTCGCTAGGCTTCGGCGCAGCAGCAAC
CGGGGACAACCACGAATGAGCCTAAAAAGGCCAAAGACCAAGATCCTGAA
AAAAAGACACACAGAATTGTTGTTGTTGTTGTCTTCACATTAAACCGTAT
GTCAGTTGCTAAATGCCAAAATCTAGCAAAGACTCTCAGCCCGTGGTCAC
GAAAGTGCTAGAGCCATCTGAGGATCTAAAGAACACGCACACATATAACG
AGAAAAAGGTATCCAAGAGCCCGAAGTGGTACACCTAAATCCCTGCAGCA
CCGTATGCGTGCCCAAAAACTGAACTGCACGTCCGTCCCACCGTTCGACT
ACAGTAGCATCACCCCCTCCCTGTCCCACTCTATACCAAAACGGAAGATT
GCCGACTACAGCATACTGCTGTCTGAAGTGCTGTCTG

Coding sequence (CDS) from alignment at Scaffold_581:74024..77060+

>EsuBft555_5a-0001 ID=EsuBft555_5a-0001|Name=EsuBft555_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=552bp|location=Sequence derived from alignment at Scaffold_581:74024..77060+ (Ectocarpus subulatus male Bft15b)
ATGGACAACTTGCACGCGCAGACCACGGACGAGTTCAAGGAGTATCTTGC
GAGGCACTGCAACACTCTCGCCTGGTATGGCCCTTCGGAGTGCACGGACG
AGGTGCAGCCAGTTGATGCAGGAGCCGGACGATTTATCAAGGTGGAAGTC
GGGAGGCAGATGGACATATGGTTCGAGCAGTCGGACAACCTCGAGAGGTG
GGAAACCGCGTCGCTGACAGCTTCTGATCGGCGCGTCCTGATCACTCCGT
GGATGGGAGCGGCCATGGCAAGACTCAACAGCCAACAGGCGTACCGATAC
CGTCTTTTCGAAAAGTGCGGGATGGTTATGACCGTGGACGGCTGGGGCGA
TGATCGAATCACCTTGGAGGGTTTGGACAAGCCGTATACCTTCGCTAACG
ATGAAGACAGTAGCGACGACGAACAAGGTTCGGAGAACGGCAACGATGAG
CCTGAGGGGCGGGCGGAGGAGGGCGATGGAGGACGTGAGACGCTCATGGA
GGGCGTTGACTCCAGCGATGAAGACGACGGCGACATCTCTCAACCCCAGN
NN