Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft2202_3 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 35 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2202_3a-0001 ID=EsuBft2202_3a-0001|Name=EsuBft2202_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=357bp|location=Sequence derived from alignment at Scaffold_581:10969..11486+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCATGTCGCCGTAATCGTCGCGACATCGATGGCGACCGGCGAAGCCGA
GCGTGGACTGGACAAAGAGATCTGTGATCGGTTTCGGCGGCTGCAGGACT
TCGATCGGAAGGTCATGACGGAGCTTTTCCATCTCTCAATTGTGAACGAT
CGAGTGCGCGTCCTGCTCGAAGACGCACTTGTTAGGAGGAAGAAGACTAT
CGGCATCGACATCAGGCACGAGTTCTCCGTGGAATTTGTTTTACTCTTTT
TCGGTGTCGTGGAGAATGTTGTTCGCACTGGGAGACGACTGGGTGATCAG
GGGCACATCGACATCGCCACTTTCGCGAATACGAAGCTGGATCGTTGTCT
GCACTAG back to topprotein sequence of EsuBft2202_3a-0001 >EsuBft2202_3 ID=EsuBft2202_3|Name=EsuBft2202_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=118bp
MHVAVIVATSMATGEAERGLDKEICDRFRRLQDFDRKVMTELFHLSIVND
RVRVLLEDALVRRKKTIGIDIRHEFSVEFVLLFFGVVENVVRTGRRLGDQ
GHIDIATFANTKLDRCLH back to topmRNA from alignment at Scaffold_581:10969..11486+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2202_3a-0001 ID=EsuBft2202_3a-0001|Name=EsuBft2202_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=518bp|location=Sequence derived from alignment at Scaffold_581:10969..11486+ (Ectocarpus subulatus male Bft15b)
ATGCATGTCGCCGTAATCGTCGCGACATCGATGGCGACCGGCGAAGCCGA
GCGTGGACTGGACAAAGAGATCTGTGATCGGTTTCGGCGGCTGCAGGACT
TCGATCGGAAGGTCATGACGGAGCTTTTCCATCTCTCAATTGTGAACGAT
CGAGTGCGCGTCCTGCTCGAAGACGCACTTGTTAGGAGGAAGAAGACTAT
CGGCATCGACATCAGGCACGAGTTCTCCGTGGAATTTGTTTTACTCTTTT
TCGGTGTCGTGGAGAATGTTGTTCGCACTGGGAGACGACTGGGTGATCAG
GGGTACGTGACGAGCGCGAGACTATCCTGGAGAAGCACGCGTCGTCGATC
GCCACGACGTGTGAACCTTGCTTCAAAACCAAGGAGTTGAAGAAACCGCA
CCCGAGGCCCGTCCTCTTCCCCTCGGACGACTCATCATTTCCGCGGGCGC
AGGTAGGAGGCAGGCACATCGACATCGCCACTTTCGCGAATACGAAGCTG
GATCGTTGTCTGCACTAG back to topCoding sequence (CDS) from alignment at Scaffold_581:10969..11486+ >EsuBft2202_3a-0001 ID=EsuBft2202_3a-0001|Name=EsuBft2202_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=357bp|location=Sequence derived from alignment at Scaffold_581:10969..11486+ (Ectocarpus subulatus male Bft15b)
ATGCATGTCGCCGTAATCGTCGCGACATCGATGGCGACCGGCGAAGCCGA
GCGTGGACTGGACAAAGAGATCTGTGATCGGTTTCGGCGGCTGCAGGACT
TCGATCGGAAGGTCATGACGGAGCTTTTCCATCTCTCAATTGTGAACGAT
CGAGTGCGCGTCCTGCTCGAAGACGCACTTGTTAGGAGGAAGAAGACTAT
CGGCATCGACATCAGGCACGAGTTCTCCGTGGAATTTGTTTTACTCTTTT
TCGGTGTCGTGGAGAATGTTGTTCGCACTGGGAGACGACTGGGTGATCAG
GGGCACATCGACATCGCCACTTTCGCGAATACGAAGCTGGATCGTTGTCT
GCACTAG back to top
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