EsuBft1005_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1005_2a	EsuBft1005_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_576 259489..264804 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1005_2a-0001	EsuBft1005_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_576 259535..263681 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1005_2a-0001-exon	agat-exon-70852	Ectocarpus subulatus male Bft15b	exon	Scaffold_576 259489..259660 +
EsuBft1005_2a-0001-exon	agat-exon-70857	Ectocarpus subulatus male Bft15b	exon	Scaffold_576 260020..260160 +
EsuBft1005_2a-0001-exon	EsuBft1005_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_576 260704..260985 +
EsuBft1005_2a-0001-exon	agat-exon-70854	Ectocarpus subulatus male Bft15b	exon	Scaffold_576 261598..261746 +
EsuBft1005_2a-0001-exon	agat-exon-70853	Ectocarpus subulatus male Bft15b	exon	Scaffold_576 262294..262491 +
EsuBft1005_2a-0001-exon	agat-exon-70855	Ectocarpus subulatus male Bft15b	exon	Scaffold_576 263082..263196 +
EsuBft1005_2a-0001-exon	agat-exon-70856	Ectocarpus subulatus male Bft15b	exon	Scaffold_576 263676..264804 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1005_2a-0001-exon	agat-five_prime_utr-20	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_576 259489..259534 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1005_2a-0001-cds	EsuBft1005_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_576 259535..259660 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1005_2a-0001-exon	agat-three_prime_utr-38	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_576 263682..264804 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_576:259489..264804+
coding sequence from alignment at Scaffold_576:259489..264804+

spliced messenger RNA

>EsuBft1005_2a-0001 ID=EsuBft1005_2a-0001|Name=EsuBft1005_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2186bp|location=Sequence derived from alignment at Scaffold_576:259489..264804+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGCGCCGTCCGTCCCTATCCCAAGCAGGAAGGGTTCAACGTCGCCCATGA
CCGCTGGTAGGGAAGCGATGGACGACAGCATGGTGGCGGAGGCAGCGGCG
ATGGCAGCGCTAGCGGCGTCCATGGCGCCATCGGAGATCCAGGGGGCAAT
GGCGAAGGGGGACTTAAAGCAGGGCTCTTCACACGGCACGGCATCGTCCA
GCACTTCGTCTGCAACGGGTGGCGGCGCGGCGGCGGCAGCGGCGGCAGCG
ATGGCAAGCCTGTCGAATCCCCACCCGACAGCAATGAAAAAGAATCACAG
CTTTATGACCAAGTTCAAGGGACTGCTGAGCCAGTCTTCCTCATCCAAGT
CCGACAGCTCCCCGCTTTCCCCCCTAGCGGCGGCGAGAGAGTCTGCTACA
AACCCGACTGTGGCCTACACACCGCGAAGCTCCCCCAAGGACGCCGCCGC
AGGCGCTGGAACCGCAAAGGCGGGGGAGGATCATCCACCCTCGCGTTCGG
AGCGGGGTGGGACTGATCCGGATTCCGCCGCCGGGGGGGGGAGTTCCGTT
GTTCGTCCGGCGTTTTCTGGGGGGGAGGAGAACGGCGCGGTCCAGGAGAT
GCGGGCGGAACTGTCCGTCTTGATCGACGCCTTCCAACAAAAGTCGGAAT
CCTTGAGCAACCGTCTCACCGAGGTAGCCGTGGAGAAGGCGGCCCTGGAG
TGCAGCCGGACCTCGCTGGGAAGCTCCCACGCCGAGGGCATAAGGCGGCT
GGCGGAGGCGGAGTTCGAGCAGCAGCGATTGGCCGACGAAGAGGACTACG
AAAAGGCGGCGGAACTGTCGCTGGAGATCGAGAACCTCAGGGAAGAGTCG
GCTTCGGCGGCACGCCGTCTCAGGCGAGTCATTCGTTCCCGCGACGACAC
CGAAGAAAGCATGCGGAAAGCCTTAGCCCTTACAACTCCCCTGGAGCTCG
AGGAGGACGGAGGTTCGTTGGATCGGTCATCCGCGGAGGCCAGGCAGGAG
CTTCTCGCTGCTGTGGAGGAGACCACTCGCGGGTTGAAAGTCTTCCAGGG
CAAACAGGGCTAAACTCACCCTCAAGGGATGACCGAAACCTTCTTGCTGC
TGCGCATCCGCCGCGAGGCGTGCGTGTGGTGGTGGAGTTGGGTCGGCACT
GATGGGGTCAGGCGGGAAAATGTAGATGCGCGGGCCTTTCTGGCCGTCGG
CGTAGGCAGTGATGCCCATCTCATTTTTGTGCGCGGAGGCAGACACCATC
AGAAAGGTGGACGGGCACTACACGGCCCTAGGTTTGCTAGAGGGAGCTGT
ATTGCCTCAGTAACCTGGCTTCGCCATCAAAGGAGGAGGGAGCAGGTGGC
GACGAGCTGAACTGGGCTGGTTGACCATTCGGCGCGAGAATTTTTATTTT
TTTCAGACCAAGAACCTTGAGTGCAATGTGGGAGAAAGCGAGGAACGGAC
TGGGAAGGACAGCAACGAGAGCGTGTACGGACGGAGCAGGTCGAGTGGCG
TTTTGCTCGGGCTGACTACAGCGGCGCCGGATGGAGCAATGGCACCGGAG
CATGCGGGCGACATCGACCCGTGGCGCACGGACAAACATTTCTATCTGTG
TTGTCATTTTTTTATTTTTTTCTGACTTTCCGTGTGTCGGTGTTGGTTCT
ATGTGATGACGTCGTCACTGGTTTTGTAGAGAGACCCGTCAGAGATGGCG
TGGCTAACCCGGGTGCCTTGGTTATGTGCCTGATCGTGGAAGACCCCTTC
AATGTGGAACGATTCTTAGCTATTGTCGATATTTTCACTGCGTGCCTAAC
ACAGACGATCGGGAGAGATTCGGGTGATTGTCAATTGCTGCTATGATGGC
TTTGGTTGGTTGTTCTCTTTCACTGTACGACCGCAGACAAATTCTGACAG
CACTTCAGACAGCAGCTTTGTGCCCCGCCAGCTGCTTGTTCCATGCCTAC
CATGGTGTTTTTGTACAGACAGCACTTCAGACAGCAGTATGCTGTAGTCG
GCAATCTTCCGTTTTGGTATCGAGTGGAACAGGGAGGGGGTGATGCTACT
GTATAGTCGAACGGTGGGACGGACGTGCAGTTCAGTTTTTGGGCACGCAT
ACGGTGCTGCAGGGATTTTTACGTGTACCTCTTCGGGCTCTTGGATACCT
TTTCCGCGTTATATGTGTGCGTGTTCTTTAGATCCT

protein sequence of EsuBft1005_2a-0001

>EsuBft1005_2 ID=EsuBft1005_2|Name=EsuBft1005_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=338bp
MTAGREAMDDSMVAEAAAMAALAASMAPSEIQGAMAKGDLKQGSSHGTAS
SSTSSATGGGAAAAAAAAMASLSNPHPTAMKKNHSFMTKFKGLLSQSSSS
KSDSSPLSPLAAARESATNPTVAYTPRSSPKDAAAGAGTAKAGEDHPPSR
SERGGTDPDSAAGGGSSVVRPAFSGGEENGAVQEMRAELSVLIDAFQQKS
ESLSNRLTEVAVEKAALECSRTSLGSSHAEGIRRLAEAEFEQQRLADEED
YEKAAELSLEIENLREESASAARRLRRVIRSRDDTEESMRKALALTTPLE
LEEDGGSLDRSSAEARQELLAAVEETTRGLKVFQGKQG

mRNA from alignment at Scaffold_576:259489..264804+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1005_2a-0001 ID=EsuBft1005_2a-0001|Name=EsuBft1005_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5316bp|location=Sequence derived from alignment at Scaffold_576:259489..264804+ (Ectocarpus subulatus male Bft15b)
GGCGCCGTCCGTCCCTATCCCAAGCAGGAAGGGTTCAACGTCGCCCATGA
CCGCTGGTAGGGAAGCGATGGACGACAGCATGGTGGCGGAGGCAGCGGCG
ATGGCAGCGCTAGCGGCGTCCATGGCGCCATCGGAGATCCAGGGGGCAAT
GGCGAAGGGGGACTTAAAGCAGGTGAATCCCAACCGCCGCGTCCTTCGCA
TCCGGGTTTTTTCCTTATTCTTGGCGGCGGGGACAACGGTGGTAATGTGT
ATTGTGAATCGCCTTTTAGGGCTCTTCGCAAGGCACGGCATCCTTCAGTG
CCTGAAAAGACCTTGTACCATTGTACCCCCCCCCCTTTTCTTCAGATCCT
GCCTTAGGGCGTCGTGCTTCTGAAAAGAATGGCGTTCTTAAAGCGTGGAC
GACGGTTGTGCTGTTTCTCGTGACCCCCCCCCCCCCCCCCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCCCCCCAGGGCTCTTCACACGGCACGG
CATCGTCCAGCACTTCGTCTGCAACGGGTGGCGGCGCGGCGGCGGCAGCG
GCGGCAGCGATGGCAAGCCTGTCGAATCCCCACCCGACAGCAATGAAAAA
GAATCACAGCTTTATGACCAAGGTGAAGAGAGAAGCGAAGTTTGTAGAGA
ACCCCGAGCGTTGCCCCGGGAACCGCAGTAACAACTCGTTCAGAAAGGCA
GAGCACATAACATCCTGCCTCCTATCACTGAGGTAGGAGCAGCAATACCC
AGATGAATCGACAGCTTGACCTTGTGTTTTTTTTTTTTTCTAAGGAATCG
TGCCTTTCTGGACTGCTGCGCTTGCAGTTTACCTCGCCGGTTTGATCAGT
CGACAGGATTGGAGGGACTGCCTGTGCACCGGTGAAGATCTTTCATTGTG
ACGGCAACAAGGCAACCAATAACACCAACGTTAATAACACCTGTGCAGGT
GTAGAGGGGGTGTGCGATCACTCTGACTTTCCGGTAGTATGCATACGCAA
GAGTTAGCAGTCACTGCTGTTATCCTTCCTGTCGGCCGGGTGCCCATATA
GATGTTTCCACGCTCGTGCAGACCCCACCGTCTCGCCGACCTTCCGGCCG
CCTCGCGTGCCTCCGACGCCGCTCCCGATCGCCCGCCCGCTGACGCACTC
GTTCCACGCACACAGTTCAAGGGACTGCTGAGCCAGTCTTCCTCATCCAA
GTCCGACAGCTCCCCGCTTTCCCCCCTAGCGGCGGCGAGAGAGTCTGCTA
CAAACCCGACTGTGGCCTACACACCGCGAAGCTCCCCCAAGGACGCCGCC
GCAGGCGCTGGAACCGCAAAGGCGGGGGAGGATCATCCACCCTCGCGTTC
GGAGCGGGGTGGGACTGATCCGGATTCCGCCGCCGGGGGGGGGAGTTCCG
TTGTTCGTCCGGCGTTTTCTGGGGGGGAGGAGAACGGCGCGGTCCAGGTG
AGGGAACTTTTTTTTCTTTTTTGCGTGTTGGACACTATTGGGTGTGTCGT
GGATGTACGGGTTTCGCTCTCGTCGATTGTGGCGGCTGTGAGCGTTACGC
AGAGCCGGGAGAGTGTGGGATAGGGGTGGGATGTGCTTTTATTCCGTGGC
TCGGTATCTATGCCTTGGTATTGATTCGTCGTGGTTGCAAGTATTGGTAG
GTCTTTCGCCTCGCCGGAGTTGTTTGTTGCCTGTCGATGAGCTGACGTAG
TGTTGCCTGCTAGTGAAAACTGCGGCAAGCCCGCAACTCCCGGCACGATC
ACACCTCTTGCGGAAACCCCGTTCGCGTTGGACATGCAGCCGTGTTACTC
TGGAAATGCTTGCCTTCGATGTGGGGTGTGTGAAAGGTAGCCATGACTAG
CGTTTTGTTCTCGTTGTTGACGATGTTGCCTTGTTTGTTGTTGATCATGG
TCATGATGTTGTCGTTTGTTGTTACTGCTCATGATGATGATGTTGTTCGT
TGTTGTTTTCGGTTGCTGTTGATAATGGTCATGGTACTGTCGGTTGTTGT
TGTTGCTGATGGTGATGCTGTCGTTTGTTGTTCGTCTTTTGGTTGCGGCC
CCCCTGCAGGAGATGCGGGCGGAACTGTCCGTCTTGATCGACGCCTTCCA
ACAAAAGTCGGAATCCTTGAGCAACCGTCTCACCGAGGTAGCCGTGGAGA
AGGCGGCCCTGGAGTGCAGCCGGACCTCGCTGGGAAGCTCCCACGCCGAG
GGCATAAGGTTTGCATACAGTCGTGGCCCCGATTTACGAGGGTACCTTAC
AAGAGGGGGCTCCGGTGTGTGAGCGTCGAAATCGGTTGTCACGGGCTCGA
CCCGGAATAGCATAGTTGGGTACCCTCTTGTTCCGGTAAAAGAGGGGGCT
CAGACATGCGAGGGTCGAGGGCCTTAATCACACCACCTTTTGGTGTCGGA
GCCGCAATTGTAGATATGGATGGAGCGCAGCAATGGTTTTCATGTTCTCA
GGGCATCGGGTACGGGTTGGAACAGCTTGAGGTGTTTCATGTTATCGGGC
ACACAAACGATGCGTTATTACCGGGAGATTTTCCCCTCCGCCGCTTTCAG
CAGGGGTTGTGAAAGTGAGTCGTGTGTGTTCCTCCTTCGGTCAACGTCCC
TCCAAGCAAAGACGATGGCTGTGTGCCGGTTCCTTGTTCGGTGGGGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGCGCGCGCGGTTGCTCCCA
CGCAGGCGGCTGGCGGAGGCGGAGTTCGAGCAGCAGCGATTGGCCGACGA
AGAGGACTACGAAAAGGCGGCGGAACTGTCGCTGGAGATCGAGAACCTCA
GGGAAGAGTCGGCTTCGGCGGCACGCCGTCTCAGGCGAGTCATTCGTTCC
CGCGACGACACCGAAGAAAGCATGCGGAAAGCCTTAGCCCTTACAACTCC
CCTGTTTCTGATATATAGACTACACGGATGTTTGTGCTGCTGCTGGTGGT
TGAATTTTCGCGAGGAGCACGAAAATCCGTCGCTGGGTCGAGAGTGATTT
TTCACTTCGTTGTCATGCGAGTGGCGATAAATATTTCCTCTTCACTTGGG
GTCGGTTTTTATGAGGGTTTGATGCGTTTTCGCTGTAGTGCCCCGTAATT
GAGGAAGGTGTTTTGGTACAATCGTACAAGTAGAGCATTGGTGTTGTTTT
GGCTGCCGAGGGGTAGTATCCTATGGCTTCCCACAGTGTCGGCCATCTGG
CCATCCCCGTTGCGATTCCTTTTTTAGTGGCGAACAAGTCTCCGCCATTG
CTGTTTCGAGGTGCACGCCAACTCTGCTGTTGCTCTTGTCGCGACTCGTG
GTGTGTTTTCGCCCCTGCCTTTTTTTCTGTAGTGGTGAACAAGTCTCCGC
TTTCCTGTTTTGCAGGTGTTTGCGAAACCTGCGGTTGCCCTCACGGCGGC
TGCTTGTGTTCTTCTTTTCTCTAAATCTCTCCCTCCCTCCTTCCATCTCT
NCCCCCCCCCCCCCCCCCCTCTGTTGGTCTTGCCTCTCGACAGGGAGCTC
GAGGAGGACGGAGGTTCGTTGGATCGGTCATCCGCGGAGGCCAGGCAGGA
GCTTCTCGCTGCTGTGGAGGAGACCACTCGCGGGTTGAAAGTCTTCCAGG
GCAAACAGGTACAGGAACGATTGCAACCCTTCTCTCGTAAAAGACGTTGC
TTTGAGTCAGACCTCAGCCACGTTCTGAAATCGTCTCATCTTTCCAATCA
AGACGTGAGGTTAGTTATTTGCCGGGACACACAGTGCATGCTTCGATGAA
GGATGCCAACAGCAGCGACAACAGCAGCAGCAACAATTGAAACATAGATG
CAGAAGTAATCTGCTGTCCTGTTTGTGTTTGGGATGCTTTCGAGGAGGAG
AGCGCTTGAGGTGGTTGCCTTGTTGGCTAGTTGGTTGATTTTTCTGTGCG
AGTCGGGATAGTACCGCAAGTTGTCGTAGTATTACCGTAGTATTACCGTA
GTATTACCGTAGTATGTACCGTAGTATTACAGTAGTTTCAAGAGTGGTAC
CGTCGTTCTCCCTTCTTCCCCTCGCTCCTCGACAAGCTTTTGCTTAGACA
TGGGTTGTAGTGAAGGGGGGGTCTTTCTGGCGAGCAGGGCTAAACTCACC
CTCAAGGGATGACCGAAACCTTCTTGCTGCTGCGCATCCGCCGCGAGGCG
TGCGTGTGGTGGTGGAGTTGGGTCGGCACTGATGGGGTCAGGCGGGAAAA
TGTAGATGCGCGGGCCTTTCTGGCCGTCGGCGTAGGCAGTGATGCCCATC
TCATTTTTGTGCGCGGAGGCAGACACCATCAGAAAGGTGGACGGGCACTA
CACGGCCCTAGGTTTGCTAGAGGGAGCTGTATTGCCTCAGTAACCTGGCT
TCGCCATCAAAGGAGGAGGGAGCAGGTGGCGACGAGCTGAACTGGGCTGG
TTGACCATTCGGCGCGAGAATTTTTATTTTTTTCAGACCAAGAACCTTGA
GTGCAATGTGGGAGAAAGCGAGGAACGGACTGGGAAGGACAGCAACGAGA
GCGTGTACGGACGGAGCAGGTCGAGTGGCGTTTTGCTCGGGCTGACTACA
GCGGCGCCGGATGGAGCAATGGCACCGGAGCATGCGGGCGACATCGACCC
GTGGCGCACGGACAAACATTTCTATCTGTGTTGTCATTTTTTTATTTTTT
TCTGACTTTCCGTGTGTCGGTGTTGGTTCTATGTGATGACGTCGTCACTG
GTTTTGTAGAGAGACCCGTCAGAGATGGCGTGGCTAACCCGGGTGCCTTG
GTTATGTGCCTGATCGTGGAAGACCCCTTCAATGTGGAACGATTCTTAGC
TATTGTCGATATTTTCACTGCGTGCCTAACACAGACGATCGGGAGAGATT
CGGGTGATTGTCAATTGCTGCTATGATGGCTTTGGTTGGTTGTTCTCTTT
CACTGTACGACCGCAGACAAATTCTGACAGCACTTCAGACAGCAGCTTTG
TGCCCCGCCAGCTGCTTGTTCCATGCCTACCATGGTGTTTTTGTACAGAC
AGCACTTCAGACAGCAGTATGCTGTAGTCGGCAATCTTCCGTTTTGGTAT
CGAGTGGAACAGGGAGGGGGTGATGCTACTGTATAGTCGAACGGTGGGAC
GGACGTGCAGTTCAGTTTTTGGGCACGCATACGGTGCTGCAGGGATTTTT
ACGTGTACCTCTTCGGGCTCTTGGATACCTTTTCCGCGTTATATGTGTGC
GTGTTCTTTAGATCCT

Coding sequence (CDS) from alignment at Scaffold_576:259489..264804+

>EsuBft1005_2a-0001 ID=EsuBft1005_2a-0001|Name=EsuBft1005_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1017bp|location=Sequence derived from alignment at Scaffold_576:259489..264804+ (Ectocarpus subulatus male Bft15b)
ATGACCGCTGGTAGGGAAGCGATGGACGACAGCATGGTGGCGGAGGCAGC
GGCGATGGCAGCGCTAGCGGCGTCCATGGCGCCATCGGAGATCCAGGGGG
CAATGGCGAAGGGGGACTTAAAGCAGGGCTCTTCACACGGCACGGCATCG
TCCAGCACTTCGTCTGCAACGGGTGGCGGCGCGGCGGCGGCAGCGGCGGC
AGCGATGGCAAGCCTGTCGAATCCCCACCCGACAGCAATGAAAAAGAATC
ACAGCTTTATGACCAAGTTCAAGGGACTGCTGAGCCAGTCTTCCTCATCC
AAGTCCGACAGCTCCCCGCTTTCCCCCCTAGCGGCGGCGAGAGAGTCTGC
TACAAACCCGACTGTGGCCTACACACCGCGAAGCTCCCCCAAGGACGCCG
CCGCAGGCGCTGGAACCGCAAAGGCGGGGGAGGATCATCCACCCTCGCGT
TCGGAGCGGGGTGGGACTGATCCGGATTCCGCCGCCGGGGGGGGGAGTTC
CGTTGTTCGTCCGGCGTTTTCTGGGGGGGAGGAGAACGGCGCGGTCCAGG
AGATGCGGGCGGAACTGTCCGTCTTGATCGACGCCTTCCAACAAAAGTCG
GAATCCTTGAGCAACCGTCTCACCGAGGTAGCCGTGGAGAAGGCGGCCCT
GGAGTGCAGCCGGACCTCGCTGGGAAGCTCCCACGCCGAGGGCATAAGGC
GGCTGGCGGAGGCGGAGTTCGAGCAGCAGCGATTGGCCGACGAAGAGGAC
TACGAAAAGGCGGCGGAACTGTCGCTGGAGATCGAGAACCTCAGGGAAGA
GTCGGCTTCGGCGGCACGCCGTCTCAGGCGAGTCATTCGTTCCCGCGACG
ACACCGAAGAAAGCATGCGGAAAGCCTTAGCCCTTACAACTCCCCTGGAG
CTCGAGGAGGACGGAGGTTCGTTGGATCGGTCATCCGCGGAGGCCAGGCA
GGAGCTTCTCGCTGCTGTGGAGGAGACCACTCGCGGGTTGAAAGTCTTCC
AGGGCAAACAGGGCTAA