Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FWK2 |
| ProteomeId | EsuBft1005_3 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 115 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.96e-97 |
| EggNOG OGs | 2CNI7@1|root,2QWH7@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1005_3a-0001 ID=EsuBft1005_3a-0001|Name=EsuBft1005_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1153bp|location=Sequence derived from alignment at Scaffold_576:256765..259458+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TTTGCGACAGCAGTATTCAATTTGTGCTCGCTCTCCCACGACACACTCGA
CGATGTTCCGCTCCTTGTTCGGGACGACCGTTGCCGGCGAGTACGGAGAC
ACTGGCACCACTGGGGGTAGACGGGGGAACCCATCGGGGCAGGAGCAAGC
GGCCCGAAAGGGAACACCGAACAAGACCGCACCTGGCGGTGGTTCTTCCT
CCGCACATCAGGATGGAGGCGGCTTCTTCCAGCTCGAGCCCACCCATGCC
TCTGCTGAGGAGTCGCTTTTCGACGACTTGGAAGTTAAACCGCCAGCAGT
GGAGCCCAAGCCTTCTCCCATGAAGCCCCCCGCAGACTCGGAGTCTGCCG
CGGGCGTCTTCTCCGCCTTTCAGTTCATGGCAGAGCCCGCCGCGGCTAGC
GACAAGGCAACACCAGTAGGAGGCAGCCCACCCTCAGCAGGAGGGGGAGG
CCAGGGGATGTCGGCGTTTTCGTTCCTGACCGAAGAGTCCCCCGCCGCCG
GGGAAAGTGGTGAAGGCCAGGACGAAACCGTCAGCATCCCTGGGGATGCT
GCCGGGAAGACCACGCCGTCTTCGTTTTCGTTCTTGTCGGAGGGAGGCGG
AGGGGGCCCTGCGACTGAGAGTAGAGTTGCCGCCGAGGCTGCGCCGTCCC
TGGTGTCATCGTCCTCTCCGCTGGCAGCGACCGGCAATGTGGTGTTGCCG
GCACCCTCCGACGGCAAGGAATCGGCAGAAGTCGGGGGTATTGCCGGACA
GACGCCGGGAGACGTCGATCAGCAGCCCGCTGTCTCGTCCGGCCTTGCGA
GCGACGTCTCTTCTCCTTCCGCTTCATCGTCTACGACGGCGCAGGCGGGT
GGCCTTGCCGCCACCGCCACCGCTGCCCAGGAAGGAGCGGACAAGCAGCC
TGCTGCTGACGATGTGCCCTCTTGGAAACCCTCGGCCGGCGTTGTTCGGA
AGAAGAGGGCGGTGAGGAGGGTGGGCTATGCTCGGGAGGAGACGCTGGCG
TCGTCGTTGATGGCTCCGCCGGTACCGCGGTCACCCACGGCGGGCCGACA
ACCCGGCAGCGGCAATGCTTCGACGGAGGCAGCAGGAGACCAGGCCAGCG
GTAGCACGCCGTCTGGGACAGCTGGGGGAGGGATTTCTCGCGGGGGGGGG
NNN back to topprotein sequence of EsuBft1005_3a-0001 >EsuBft1005_3 ID=EsuBft1005_3|Name=EsuBft1005_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=367bp
MFRSLFGTTVAGEYGDTGTTGGRRGNPSGQEQAARKGTPNKTAPGGGSSS
AHQDGGGFFQLEPTHASAEESLFDDLEVKPPAVEPKPSPMKPPADSESAA
GVFSAFQFMAEPAAASDKATPVGGSPPSAGGGGQGMSAFSFLTEESPAAG
ESGEGQDETVSIPGDAAGKTTPSSFSFLSEGGGGGPATESRVAAEAAPSL
VSSSSPLAATGNVVLPAPSDGKESAEVGGIAGQTPGDVDQQPAVSSGLAS
DVSSPSASSSTTAQAGGLAATATAAQEGADKQPAADDVPSWKPSAGVVRK
KRAVRRVGYAREETLASSLMAPPVPRSPTAGRQPGSGNASTEAAGDQASG
STPSGTAGGGISRGGGX back to topmRNA from alignment at Scaffold_576:256765..259458+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1005_3a-0001 ID=EsuBft1005_3a-0001|Name=EsuBft1005_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2694bp|location=Sequence derived from alignment at Scaffold_576:256765..259458+ (Ectocarpus subulatus male Bft15b)
TTTGCGACAGCAGTATTCAATTTGTGCTCGCTCTCCCACGACACACTCGA
CGATGTTCCGCTCCTTGTTCGGGACGACCGTTGCCGGCGAGTACGGAGAC
ACTGGCACCACTGGGGGTAGACGGGGGAACCCATCGGGGCAGGAGCAAGC
GGCCCGAAAGGGAACACCGAACAAGACCGCACCTGGCGGTGGTTCTTCCT
CCGCACATCAGGATGGAGGCGGCTTCTTCCAGCTCGAGCCCACCCATGCC
TCTGCTGGTGAGAGGCTTAAAGAGAGGGAACGGGATGTGTTAGGAGTGCT
TTTAAGCTCTTGTGATGTTGCTTTGCTTTGGGTGTTGTTGACTATGCTTG
CTGAACAGCCAAACCTATCGTTCGTCATGCATGCCGGAGGCTTCTCGATA
GAGAACAGGGGTTGAATCTCTGGTGTGTGGAGCAGTCGAAACAGCAGCCG
CAGCCGCCGCAGCAGCAGCAGCAACAGCAGCTAGAACAGACTACTGTATG
GCGTTACAGCGCGTACGTGTGTTGCGCGAGAGCGTGGGAGGCTTCTATCC
GGTTAAGGAAATATTCCCGGTTGTAAGTGCGTTTGTTAGGACATGGATGT
TCTGTGGTTCAAAACGAGTGTGGGAGAGTGCGAAAGCGTGACCTGCAACC
TTCGGAGGACAGCGTAGACTACCGCGGTAGCCGTTGAAGACTATGCTAGA
GGCATGGGACAGGGAAACGAGACATAGTCTACACACACATGGAATCCTGA
AACATTTTTTTTTCTTTTGAGGAAAAATAACGTTCTCAGACTCTAGAGAG
GGCGCAGCACGGCTGTGCGTACTCTCTTTCCGAACATGAAGCCAACTTTG
GTCCCACCCAACGCATGCAGCGTTTGGCGCGAAACGACGCCATGTTTTCA
TCTCCCACAAGCTGCCGCTGGAGTTGTACGTGACAAAAGAAGGCGTTCGT
TCTCTGAGCTCGAGGCATCGCGTTTCGGAGACAAATGAGTTGTCAACAAG
TCAAGGCATGCCCATGTCCGTTTTCCCCCGCAAACCGAACTCATCTCGGC
TGCTCTCCTTGGTGCGTGTCTCTGTGCTTGTTCGTTTCGTGTGTCGCGTT
GTTGTTAGAGGAGTCGCTTTTCGACGACTTGGAAGTTAAACCGCCAGCAG
TGGAGCCCAAGCCTTCTCCCATGAAGCCCCCCGCAGACTCGGTAGGTGCC
CCTTCGTTGCAAGCGACGCGTGCAGCGCACGTCTCGAGAAAATGTAGCGG
TTATTCCTTAGAGCGCCAGAGGCGACGGGTGCTGCGCATGTCTTGAAACA
AGTAGCAGCAGCGGTTGTGCCCAAGAGCCGGTAGAAGCAACGCGTGCTGC
GCATGTCGTAATACAGGCAGCAGCGGTAGTTCCGAAGAGCCGCTGGCAAA
GTCCGGCTCCGGCGCTGCAGTGTCTTCCGCGTTCGACACCTTTGTTGATT
AAAGTTTTGATATTTGGAGGAATCGTGTTCCAGGTGGGGAGAGGGTATGT
GCGTCTGTGTGTGCCGTCTTCTGCCACCCGGCAATGATGATTGCCTAGGG
TTAAGGTTAGTGTCTCAAGCGTTTGGCGCTGCTGCCTACGTCCATATTAT
GATGTTTGAGGACTCGTGTTCCGGGTGGTGAGCTGGGCGCAGTATGTGGC
TTTCACGCGTTTGTGCTTGTTTCTGTTTGCGCGGTCATTTGGCAACCGAT
CATGGTTCTTGCCCATCGTGAAAAGTTGCTCACCGACTTCGTCTCCTAGA
TCAGGTCCCGGAGAACCATTTGTCGTATTAGAGAACCAGTTCTCGCATTA
CATGTCATAGCTGCTACCGATCTTGATGGCCTGTCCCTTCCTCGCTCTCT
CCGCACACATTTATCGTATCTGTTCCAGCAGGAGTCTGCCGCGGGCGTCT
TCTCCGCCTTTCAGTTCATGGCAGAGCCCGCCGCGGCTAGCGACAAGGCA
ACACCAGTAGGAGGCAGCCCACCCTCAGCAGGAGGGGGAGGCCAGGGGAT
GTCGGCGTTTTCGTTCCTGACCGAAGAGTCCCCCGCCGCCGGGGAAAGTG
GTGAAGGCCAGGACGAAACCGTCAGCATCCCTGGGGATGCTGCCGGGAAG
ACCACGCCGTCTTCGTTTTCGTTCTTGTCGGAGGGAGGCGGAGGGGGCCC
TGCGACTGAGAGTAGAGTTGCCGCCGAGGCTGCGCCGTCCCTGGTGTCAT
CGTCCTCTCCGCTGGCAGCGACCGGCAATGTGGTGTTGCCGGCACCCTCC
GACGGCAAGGAATCGGCAGAAGTCGGGGGTATTGCCGGACAGACGCCGGG
AGACGTCGATCAGCAGCCCGCTGTCTCGTCCGGCCTTGCGAGCGACGTCT
CTTCTCCTTCCGCTTCATCGTCTACGACGGCGCAGGCGGGTGGCCTTGCC
GCCACCGCCACCGCTGCCCAGGAAGGAGCGGACAAGCAGCCTGCTGCTGA
CGATGTGCCCTCTTGGAAACCCTCGGCCGGCGTTGTTCGGAAGAAGAGGG
CGGTGAGGAGGGTGGGCTATGCTCGGGAGGAGACGCTGGCGTCGTCGTTG
ATGGCTCCGCCGGTACCGCGGTCACCCACGGCGGGCCGACAACCCGGCAG
CGGCAATGCTTCGACGGAGGCAGCAGGAGACCAGGCCAGCGGTAGCACGC
CGTCTGGGACAGCTGGGGGAGGGATTTCTCGCGGGGGGGGGNNN back to topCoding sequence (CDS) from alignment at Scaffold_576:256765..259458+ >EsuBft1005_3a-0001 ID=EsuBft1005_3a-0001|Name=EsuBft1005_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1101bp|location=Sequence derived from alignment at Scaffold_576:256765..259458+ (Ectocarpus subulatus male Bft15b)
ATGTTCCGCTCCTTGTTCGGGACGACCGTTGCCGGCGAGTACGGAGACAC
TGGCACCACTGGGGGTAGACGGGGGAACCCATCGGGGCAGGAGCAAGCGG
CCCGAAAGGGAACACCGAACAAGACCGCACCTGGCGGTGGTTCTTCCTCC
GCACATCAGGATGGAGGCGGCTTCTTCCAGCTCGAGCCCACCCATGCCTC
TGCTGAGGAGTCGCTTTTCGACGACTTGGAAGTTAAACCGCCAGCAGTGG
AGCCCAAGCCTTCTCCCATGAAGCCCCCCGCAGACTCGGAGTCTGCCGCG
GGCGTCTTCTCCGCCTTTCAGTTCATGGCAGAGCCCGCCGCGGCTAGCGA
CAAGGCAACACCAGTAGGAGGCAGCCCACCCTCAGCAGGAGGGGGAGGCC
AGGGGATGTCGGCGTTTTCGTTCCTGACCGAAGAGTCCCCCGCCGCCGGG
GAAAGTGGTGAAGGCCAGGACGAAACCGTCAGCATCCCTGGGGATGCTGC
CGGGAAGACCACGCCGTCTTCGTTTTCGTTCTTGTCGGAGGGAGGCGGAG
GGGGCCCTGCGACTGAGAGTAGAGTTGCCGCCGAGGCTGCGCCGTCCCTG
GTGTCATCGTCCTCTCCGCTGGCAGCGACCGGCAATGTGGTGTTGCCGGC
ACCCTCCGACGGCAAGGAATCGGCAGAAGTCGGGGGTATTGCCGGACAGA
CGCCGGGAGACGTCGATCAGCAGCCCGCTGTCTCGTCCGGCCTTGCGAGC
GACGTCTCTTCTCCTTCCGCTTCATCGTCTACGACGGCGCAGGCGGGTGG
CCTTGCCGCCACCGCCACCGCTGCCCAGGAAGGAGCGGACAAGCAGCCTG
CTGCTGACGATGTGCCCTCTTGGAAACCCTCGGCCGGCGTTGTTCGGAAG
AAGAGGGCGGTGAGGAGGGTGGGCTATGCTCGGGAGGAGACGCTGGCGTC
GTCGTTGATGGCTCCGCCGGTACCGCGGTCACCCACGGCGGGCCGACAAC
CCGGCAGCGGCAATGCTTCGACGGAGGCAGCAGGAGACCAGGCCAGCGGT
AGCACGCCGTCTGGGACAGCTGGGGGAGGGATTTCTCGCGGGGGGGGGNN
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