EsuBft1005_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1005_10a-0001
Unique NameEsuBft1005_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_576contigScaffold_576:189229..192982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7029.ACYPI40717-PA
ProteomeIdEsuBft1005_10
Protein domainsCoil
Protein domainsPTHR19446
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl33208|Metazoa
Length326
Evalue1.12e-18
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3CYKV@33213|Bilateria,420TT@6656|Arthropoda,3SQX5@50557|Insecta,3EDFZ@33342|Paraneoptera
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_10aEsuBft1005_10aEctocarpus subulatus male Bft15bgeneScaffold_576 189229..192982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_10a-0001EsuBft1005_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_576 191180..192982 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_10a-0001-exonagat-exon-70911Ectocarpus subulatus male Bft15bexonScaffold_576 189229..189591 -
EsuBft1005_10a-0001-exonEsuBft1005_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_576 189873..191470 -
EsuBft1005_10a-0001-exonagat-exon-70910Ectocarpus subulatus male Bft15bexonScaffold_576 191684..192982 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_10a-0001-exonagat-three_prime_utr-32Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_576 189229..189591 -
EsuBft1005_10a-0001-exonagat-three_prime_utr-33Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_576 189873..191179 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_10a-0001-cdsEsuBft1005_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_576 191180..191470 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1005_10a-0001 ID=EsuBft1005_10a-0001|Name=EsuBft1005_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3260bp|location=Sequence derived from alignment at Scaffold_576:189229..192982- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGTAGCCACCGTCAACCTCGGTGGCAGGCTTGCCCACAACCGTGC
AGTCCGGACTGAACCGAAACAGAAGCAATTCAACCGACGGGAATTGCAGT
TCGAAGCAGCACGGTGTGCGGTGACTAATCGGTTCCTCCTCAACCTCGAC
ACACGACCGGACGAGCGAACAACCACCGCCGCGGAATTGGCGACCGACTT
CACCAATGCTCTCCTCGACGCAGCGCGGACGACCCTGGGGGAGGAACCGC
GGAGACGCCGCACGCAGGAGTGGTGTGAGACCCCAGAGACGCGAGCAGCG
CTGGAGCAGGCCCTTACCAAACGTCGGGAAGCGCGCCGGGCGATGAGGGG
CAACTGGAACTCAGCGACGTGCAGGGTTCTCAAAGCAGCGTGTAAGGGAG
TGGCTACAGCAGTCGGAACGGGCATTTATGCCCACCTGGACGGATATATA
ACTGAGCTCGAAGAAATCTACAAAGATCGCGACATGCGAGGACTGTACCA
ACACCTCAAGAGATCAGTGGGCCTCAGCCGGAGACAAGCGGGGGGACAGC
AGTTCGTCGCGGATGAGAACGGTGTGTTGCTCCGGAACAGGGACGACATC
CTCCAGCGGTGGGCGAGATTCTTCAGAACCCTACTCAACACCAAATCCCC
AACCCTGAACCCANACAAAGATCGCGACATGCGAGGACTGTACCAACACC
TCAAGAGATCAGTGGGCCTCAGCCGGAGACAAGCGGGGGGACAGCAGTTC
GTCGCGGATGAGAACGGTGTGTTGCTCCGGAACAGGGACGACATCCTCCA
GCGGTGGGCGAGATTCTTCAGCACCCTATTCAACACCAAATCCCCCACCC
TGAACCCAGACATCATCGAACGGGTGACGCAGCGGCCAGCGACACGTGAC
ACTCAACGGTTGGGAGATGTGCCAGAACTCGAGGAGGTGGCACGGGCAAC
GAAAGGCCTCAAGAACTGGAAGGCACTCGGCCATGACTCCCTCCCTGCCG
AGCTGCTCAAGATCGATGACGACGAACCCTTCGTCCTGGGACACCTCCAC
ACCATCCTCGTCAAGGTTTGGAACGGAGGAGATATTCCGCGAGAGTGGAA
GGATGCAACCATCAAGGTGCTGTACAAGAAGGGCGACCGATCCAACTGTA
ATAACTACAGGGGAATTTCGCTACTCTCATGTAGGCGAGGTCCCCATCAA
GATCATCACCAACCGTCTAAGCGCCTTCTGCGAAGCCAACAACATCCTCC
CGGAGGAACAGCGCGGATTTCGACCCAAGCGATCAACCGTCGACATGCTG
GCCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAATTCCACGATGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGGAGACACCCCTTGACCGAGTACGGAGGGCAGTATGGGGGATGC
TGTATGCCGATGATGCCGGCGTCGTATCGAGGTCTGCAGAAGGACTGGCC
AGAATGATGACCATCATCGTTGAGGTGTTCGGGGAGTTCGGGCTAACGGT
GTCGGAGAAGACGACGGAGACGCTCCTGATGCGCGCATAGGACAAGCCGA
CTACAACATCACAGCCCGGCCCGCTTCCTACACTGACCATCGAAGCCGCG
GGACAGAAATACGCCCAGACGACCGAGTTCCGGTACCTCGGTGGCCTCGT
CAACGAACATGGCGACCTCACCCGGGAGATCAACTACAAGAGCAGAGGAG
CGTGGGCGTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACAGACCGCAA
GCGCCATTCCGACTCAAGATCCGCCTGCTCCAGGCGGAGGCGATGGAGGC
ACGGTTGCATGACATGGTCACCACTCAGCGGCCACTATCAGACGCTGCGG
TCGATACATCACCGACTGCTCCTTCGAGCTAACGGGTACAAGCGCAAGAA
AGACACCTACCGGCAGCTCTCTTACGCCCAGACGCTGAAGAGGGTCGAAT
GTCAGAGCGTTGAAGCCACGATCCGACAACGACGCCTACTGTTCGCGGGA
GCATTGGCAAGGCAGCCGGACGGTCGACTCCCGAAGCGAATGATGTTCGG
CGAACTGGCAGGGGGGGAGAAGCGACGTAGGGGGGGACAGGAACAGAACT
GGCCGAAGTGTGTGCTCGACGACCTTAAGGCATTCGGGGCCGACCACGGA
TCTACGAAAACCGATCCATGCTATCTCGGAATCCCGGTACCGAAAGACAC
GGCACCGAAGTTAAGGTGGACGGAAGCCGCGAAGGTAGAGAAGGGAGTAC
CCTGGCAGGCGGCGTTGCTGCAGGGAGCTGAGAGGTTCATGACCTCCTGG
CACAAGAAGGAGAGGCCACCGACAACGGGCGGTCAAACGAAACCACAAGC
CATCAACCAATGGGGCGGGAGGGGGGCAGGAGACGGACGAGACGGCGAGG
GAAGAAAGCAAACGAGAAGAGACGGACCGAGTGGCGCGATACGTGCCGGA
ATGAATTTCTTCTAGCCATTTCCCCCCCGCCCCAACGCTGCACCATTGCA
CCAACCCCCCACTAGTGATGACGTACNTCCGGCCTGGTCCCTTTTTGTCC
TCGCTCTTTTTATTTGATTTTCTCTTTCGTTACTGTTTCCTCTTATTTTC
TTCTCTTTTTCTCTTTTTTGTCTCTTTCTGTGCCAGATGGCCTTGTCTCT
GCTTGCGTTGTGAAGTACCAAGATTGAACCAAAAGGAGGTGTACCTCATT
CTCTCCGGCCCGTGATGGTGACTCCTAGTCTCAGTTGTTACCTCGCATAG
CGCGCAGAGGGAGTGGAGGACTCCAGAATATCTGTCGTTAATTTCTATTG
ACTTGCGGACCCCTCGGGGCCATTTTATCTGAGTGTACCTTGTAAGGGCG
AGAGGTCATGAGTCTAGCATTTACTTACGCACCTGTTACCTTTGCTTCAC
ACACATTGTCCTTCACAACTTGAGAGTGAGGGGTATCGTGAGCCTATACC
TATCTACCACCTGTTTCTTATGCTTTACACTCTTCACAACTTGCGACTGA
GAGGTATCTTGCGCCCTATAGCCATCATTGCTATGCTCACCCTTCCCTTG
AAACAGAGCAAGAGGTATCGTAAGCCTAGCCCTACCCCCCACCTGTCATC
TTCGCTTCACTCACATTTTCCTTCACAACTTGAGACTGAGAGGTATCATG
AGCCTAGCCCAATCTACCACCTGTTATGTCCGCTTTACTCACACTTTAGT
GCTGCACTTC
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protein sequence of EsuBft1005_10a-0001

>EsuBft1005_10 ID=EsuBft1005_10|Name=EsuBft1005_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=529bp
MVVATVNLGGRLAHNRAVRTEPKQKQFNRRELQFEAARCAVTNRFLLNLD
TRPDERTTTAAELATDFTNALLDAARTTLGEEPRRRRTQEWCETPETRAA
LEQALTKRREARRAMRGNWNSATCRVLKAACKGVATAVGTGIYAHLDGYI
TELEEIYKDRDMRGLYQHLKRSVGLSRRQAGGQQFVADENGVLLRNRDDI
LQRWARFFRTLLNTKSPTLNPXKDRDMRGLYQHLKRSVGLSRRQAGGQQF
VADENGVLLRNRDDILQRWARFFSTLFNTKSPTLNPDIIERVTQRPATRD
TQRLGDVPELEEVARATKGLKNWKALGHDSLPAELLKIDDDEPFVLGHLH
TILVKVWNGGDIPREWKDATIKVLYKKGDRSNCNNYRGISLLSCRRGPHQ
DHHQPSKRLLRSQQHPPGGTARISTQAINRRHAGRDSREADRSHPPIPRX
XXXXXXXXXXXXXXXXXXXETPLDRVRRAVWGMLYADDAGVVSRSAEGLA
RMMTIIVEVFGEFGLTVSEKTTETLLMRA
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mRNA from alignment at Scaffold_576:189229..192982-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1005_10a-0001 ID=EsuBft1005_10a-0001|Name=EsuBft1005_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3754bp|location=Sequence derived from alignment at Scaffold_576:189229..192982- (Ectocarpus subulatus male Bft15b)
ATGGTAGTAGCCACCGTCAACCTCGGTGGCAGGCTTGCCCACAACCGTGC AGTCCGGACTGAACCGAAACAGAAGCAATTCAACCGACGGGAATTGCAGT TCGAAGCAGCACGGTGTGCGGTGACTAATCGGTTCCTCCTCAACCTCGAC ACACGACCGGACGAGCGAACAACCACCGCCGCGGAATTGGCGACCGACTT CACCAATGCTCTCCTCGACGCAGCGCGGACGACCCTGGGGGAGGAACCGC GGAGACGCCGCACGCAGGAGTGGTGTGAGACCCCAGAGACGCGAGCAGCG CTGGAGCAGGCCCTTACCAAACGTCGGGAAGCGCGCCGGGCGATGAGGGG CAACTGGAACTCAGCGACGTGCAGGGTTCTCAAAGCAGCGTGTAAGGGAG TGGCTACAGCAGTCGGAACGGGCATTTATGCCCACCTGGACGGATATATA ACTGAGCTCGAAGAAATCTACAAAGATCGCGACATGCGAGGACTGTACCA ACACCTCAAGAGATCAGTGGGCCTCAGCCGGAGACAAGCGGGGGGACAGC AGTTCGTCGCGGATGAGAACGGTGTGTTGCTCCGGAACAGGGACGACATC CTCCAGCGGTGGGCGAGATTCTTCAGAACCCTACTCAACACCAAATCCCC AACCCTGAACCCANACAAAGATCGCGACATGCGAGGACTGTACCAACACC TCAAGAGATCAGTGGGCCTCAGCCGGAGACAAGCGGGGGGACAGCAGTTC GTCGCGGATGAGAACGGTGTGTTGCTCCGGAACAGGGACGACATCCTCCA GCGGTGGGCGAGATTCTTCAGCACCCTATTCAACACCAAATCCCCCACCC TGAACCCAGACATCATCGAACGGGTGACGCAGCGGCCAGCGACACGTGAC ACTCAACGGTTGGGAGATGTGCCAGAACTCGAGGAGGTGGCACGGGCAAC GAAAGGCCTCAAGAACTGGAAGGCACTCGGCCATGACTCCCTCCCTGCCG AGCTGCTCAAGATCGATGACGACGAACCCTTCGTCCTGGGACACCTCCAC ACCATCCTCGTCAAGGTTTGGAACGGAGGAGATATTCCGCGAGAGTGGAA GGATGCAACCATCAAGGTGCTGTACAAGAAGGGCGACCGATCCAACTGTA ATAACTACAGGGGAATTTCGCTACTCTCATGTAGGCGAGGTCCCCATCAA GATCATCACCAACCGTCTAAGCGCCTTCTGCGAAGCCAACAACATCCTCC CGGAGGAACAGCGCGGATTTCGACCCAAGCGATCAACCGTCGACATGCTG TTAGTCGTGCGCCGCCTCCAGGAGCTGGGGCGGAGAAAAAAAATACTGCT CCACATGTGCTTCGTCGACTTGAACAAGGCGTATGATTCGGTGGACCGAN GCCTCCAGGAGCTGGGGAGGAGAAAGAAAATACCGCTCTACATGTGCTTC GTCGACTTGAACAAGGCGTATGATTCGGTCAACCGAGAGGTGCTATGGAA GGTGCTTGCCAGGGCCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCC AATTCCACGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNGGAGACACCCCTTGACCGAGTACGGAGGGCA GTATGGGGGATGCTGTATGCCGATGATGCCGGCGTCGTATCGAGGTCTGC AGAAGGACTGGCCAGAATGATGACCATCATCGTTGAGGTGTTCGGGGAGT TCGGGCTAACGGTGTCGGAGAAGACGACGGAGACGCTCCTGATGCGCGCA TAGGACAAGCCGACTACAACATCACAGCCCGGCCCGCTTCCTACACTGAC CATCGAAGCCGCGGGACAGAAATACGCCCAGACGACCGAGTTCCGGTACC TCGGTGGCCTCGTCAACGAACATGGCGACCTCACCCGGGAGATCAACTAC AAGAGCAGAGGAGCGTGGGCGTGCCTCAGGCGATATGGCCGGGAGCTCTT CGACAGACCGCAAGCGCCATTCCGACTCAAGATCCGCCTGCTCCAGGCGG AGGCGATGGAGGCACGGTTGCATGACATGGTCACCACTCAGCGGCCACTA TCAGACGCTGCGGTCGATACATCACCGACTGCTCCTTCGAGCTAACGGGT ACAAGCGCAAGAAAGACACCTACCGGCAGCTCTCTTACGCCCAGACGCTG AAGAGGGTCGAATGTCAGAGCGTTGAAGCCACGATCCGACAACGACGCCT ACTGTTCGCGGGAGCATTGGCAAGGCAGCCGGACGGTCGACTCCCGAAGC GAATGATGTTCGGCGAACTGGCAGGGGGGGAGAAGCGACGTAGGGGGGGA CAGGAACAGAACTGGCCGAAGTGTGTGCTCGACGACCTTAAGGCATTCGG GGCCGACCACGGATCTACGAAAACCGATCCATGCTATCTCGGAATCCCGG TACCGAAAGACACGGCACCGAAGTTAAGGTGGACGGAAGCCGCGAAGGTA GAGAAGGGAGTACCCTGGCAGGCGGCGTTGCTGCAGGGAGCTGAGAGGTT CATGACCTCCTGGCACAAGAAGGAGAGGCCACCGACAACGGGCGGTCAAA CGAAACCACAAGCCATCAACCAATGGGGCGGGAGGGGGGCAGGAGACGGA CGAGACGGCGAGGGAAGAAAGCAAACGAGAAGAGACGGACCGAGTGGCGC GATACGTGCCGGAATGAATTTCTTCTAGCCATTTCCCCCCCGCCCCAACG CTGCACCATTGCACCAACCCCCCACTAGTGATGACGTACNTCCGGCCTGG TCCCTTTTTGTCCTCGCTCTTTTTATTTGATTTTCTCTTTCGTTACTGTT TCCTCTTATTTTCTTCTCTTTTTCTCTTTTTTGTCTCTTTCTGTGCCAGA TGGCCTTGTCTCTGCTTGCGTTGTGAAGTACCAAGATTGAACCAAAAGGA GGTGTACCTCATTCTCTCCGGCCCGTGATGGTGACTCCTAGTCTCAGTTG TTACCTCGCATAGCGCGCAGAGGGAGTGGAGGACTCCAGAATATCTGTCG TTAATTTCTATTGACTTGCGGACCCCTCGGGGCCATTTTATCTGAGTGTA CCTTGTAAGGGTAAGTTAGCCTGCGACCACGGGAATCGACCGCCGCGAGT GTTGTATCAGTACGGACATACGAAGGTACTGGTAGAGAGAGATCGAAACG GTTTTGAATGTGAAGACAACAACAACACAGTTCCGTTGCTTTTCTCAAAC CTTCATTGACAACTTGAAGGCGAGAGGTATTGATGCTTGTTATGGTGCGG AGCGGAGTCCTCGACAACTCGAGACTAAGAGTCGGTGGTATCATGAGCCC CTACTTAGTTGCGTTGCCAAACCTTCATTGACAACTTGTAGGCGAGAGGT CATGAGTCTAGCATTTACTTACGCACCTGTTACCTTTGCTTCACACACAT TGTCCTTCACAACTTGAGAGTGAGGGGTATCGTGAGCCTATACCTATCTA CCACCTGTTTCTTATGCTTTACACTCTTCACAACTTGCGACTGAGAGGTA TCTTGCGCCCTATAGCCATCATTGCTATGCTCACCCTTCCCTTGAAACAG AGCAAGAGGTATCGTAAGCCTAGCCCTACCCCCCACCTGTCATCTTCGCT TCACTCACATTTTCCTTCACAACTTGAGACTGAGAGGTATCATGAGCCTA GCCCAATCTACCACCTGTTATGTCCGCTTTACTCACACTTTAGTGCTGCA CTTC
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Coding sequence (CDS) from alignment at Scaffold_576:189229..192982-

>EsuBft1005_10a-0001 ID=EsuBft1005_10a-0001|Name=EsuBft1005_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1590bp|location=Sequence derived from alignment at Scaffold_576:189229..192982- (Ectocarpus subulatus male Bft15b)
ATGGTAGTAGCCACCGTCAACCTCGGTGGCAGGCTTGCCCACAACCGTGC
AGTCCGGACTGAACCGAAACAGAAGCAATTCAACCGACGGGAATTGCAGT
TCGAAGCAGCACGGTGTGCGGTGACTAATCGGTTCCTCCTCAACCTCGAC
ACACGACCGGACGAGCGAACAACCACCGCCGCGGAATTGGCGACCGACTT
CACCAATGCTCTCCTCGACGCAGCGCGGACGACCCTGGGGGAGGAACCGC
GGAGACGCCGCACGCAGGAGTGGTGTGAGACCCCAGAGACGCGAGCAGCG
CTGGAGCAGGCCCTTACCAAACGTCGGGAAGCGCGCCGGGCGATGAGGGG
CAACTGGAACTCAGCGACGTGCAGGGTTCTCAAAGCAGCGTGTAAGGGAG
TGGCTACAGCAGTCGGAACGGGCATTTATGCCCACCTGGACGGATATATA
ACTGAGCTCGAAGAAATCTACAAAGATCGCGACATGCGAGGACTGTACCA
ACACCTCAAGAGATCAGTGGGCCTCAGCCGGAGACAAGCGGGGGGACAGC
AGTTCGTCGCGGATGAGAACGGTGTGTTGCTCCGGAACAGGGACGACATC
CTCCAGCGGTGGGCGAGATTCTTCAGAACCCTACTCAACACCAAATCCCC
AACCCTGAACCCANACAAAGATCGCGACATGCGAGGACTGTACCAACACC
TCAAGAGATCAGTGGGCCTCAGCCGGAGACAAGCGGGGGGACAGCAGTTC
GTCGCGGATGAGAACGGTGTGTTGCTCCGGAACAGGGACGACATCCTCCA
GCGGTGGGCGAGATTCTTCAGCACCCTATTCAACACCAAATCCCCCACCC
TGAACCCAGACATCATCGAACGGGTGACGCAGCGGCCAGCGACACGTGAC
ACTCAACGGTTGGGAGATGTGCCAGAACTCGAGGAGGTGGCACGGGCAAC
GAAAGGCCTCAAGAACTGGAAGGCACTCGGCCATGACTCCCTCCCTGCCG
AGCTGCTCAAGATCGATGACGACGAACCCTTCGTCCTGGGACACCTCCAC
ACCATCCTCGTCAAGGTTTGGAACGGAGGAGATATTCCGCGAGAGTGGAA
GGATGCAACCATCAAGGTGCTGTACAAGAAGGGCGACCGATCCAACTGTA
ATAACTACAGGGGAATTTCGCTACTCTCATGTAGGCGAGGTCCCCATCAA
GATCATCACCAACCGTCTAAGCGCCTTCTGCGAAGCCAACAACATCCTCC
CGGAGGAACAGCGCGGATTTCGACCCAAGCGATCAACCGTCGACATGCTG
GCCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAATTCCACGATGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGGAGACACCCCTTGACCGAGTACGGAGGGCAGTATGGGGGATGC
TGTATGCCGATGATGCCGGCGTCGTATCGAGGTCTGCAGAAGGACTGGCC
AGAATGATGACCATCATCGTTGAGGTGTTCGGGGAGTTCGGGCTAACGGT
GTCGGAGAAGACGACGGAGACGCTCCTGATGCGCGCATAG
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