Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G180 |
| ProteomeId | EsuBft1005_14 |
| Protein domains | PF13374 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 117 |
| Hectar predicted targeting category | no signal peptide or anchor |
| Evalue | 1.08e-05 |
| EggNOG OGs | COG0457@1|root,KOG1840@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | determination of stomach left/right asymmetry |
| COG category | C |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1005_14a-0001 ID=EsuBft1005_14a-0001|Name=EsuBft1005_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1178bp|location=Sequence derived from alignment at Scaffold_576:147681..150443+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TATTGAACTTGAAGTTGACCCTGCCTCGTAAACCACTGTGTCTCAGGGCG
AGTACGCGGGGGCCGAGCCACTCTTTGAACGGTCCCAGTCCGTACGAGAG
AATGTACTAGATACGGAGCATGTTAATGTGGCCACGACGCTCAACGATCG
GGCGGTGTTGTGTCATTGCCAGAACAATTTTACGAGCGGTCAGAAGCCGT
TCGAGACAAGGCCCTGGATCCGGACCACCCCGATGTGGCCCGATTGCTCA
ACGACCGGGCGTTGTTGTTGGACAAGATGGAGCAGTATACGGACGCAGTT
CCACTATTGGAGAGGGCCCTCTCAATCCGTATGAAAAAGCTTGGGGAAAA
CCACCCAGACACGGTCAGCACTCAGAACAGCCTGGACGTTGTGCGAAGGA
AGGGGTGAAACGAGATGGAAGAAGCTGCCTGCCGTATATTGGTCACTGCC
AACGCCATGATCAAGGCAGGGCGAAGCTGCGGCAGGCAAGGTTCAACCGA
CCAATCGCCGGAGTGTGGTGGCCGACCTGGCCGACCTCTGCCGTATGCGT
AACGCGTGATGGCATCAGTTTGCTATGAAAAGCTGCAGAGGGAGGCTTAG
TAGCTCAACATACGGGCCTTTTCATTGTACCATACTATGGATCAGACCGC
GGTTGGAAGATCGCTACAATACACTTGTATAAGACTGACAGATTTGCAAG
GCATCATTAGGTCTGTGTGATCTATGCATCGGAACTGTCTGTCACGACTG
AATGTGTGTGGTACACGTATGCTCGTTGGGAAGACGATGGGATCGGAGAT
GATTTCCTGTGGACCAAGGATAGTAAAGCCATGGGGTTTAATACGCAACA
TGGTTCTGATGTCGATAGAAGTTGTGCGTAAGTGTAGTCCCGAATGTCCG
CGAACAGGAAACTGCGCGCGCCACTATTATTACAGTACGGGCCGGGAGAT
AAGAAACGTCAAAATCGGGTCGAGCCTCAATCCCTTATATTGGGTCGAAG
GACCACCCGACGTCGTCCATTTTCTTAGAAGGCATCTCTTATTCGTTTGG
ACTGCCGCATCCTCCTGATTTTCGTATTTCTTATTTTCTTTGTTCTGGCT
GAGAACACAACAACACACCAAACATTCATGCAGCATTAACCATAAAGCTC
GGTGTGGCAAACATTGGAGTGCGTCGCC back to topprotein sequence of EsuBft1005_14a-0001 >EsuBft1005_14 ID=EsuBft1005_14|Name=EsuBft1005_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=43bp
MEQYTDAVPLLERALSIRMKKLGENHPDTVSTQNSLDVVRRKG back to topmRNA from alignment at Scaffold_576:147681..150443+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1005_14a-0001 ID=EsuBft1005_14a-0001|Name=EsuBft1005_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2763bp|location=Sequence derived from alignment at Scaffold_576:147681..150443+ (Ectocarpus subulatus male Bft15b)
TATTGAACTTGAAGTTGACCCTGCCTCGTAAACCACTGTGTCTCAGGGCG
AGTACGCGGGGGCCGAGCCACTCTTTGAACGGTCCCAGTCCGTACGAGAG
AATGTACTAGATACGGAGCATGTTAATGTGGCCACGACGCTCAACGATCG
GGCGGTGTTGTGTCATTGCCAGGTGAGGGTCAACGGACGACTCTAGATGC
TTGTCCGTAGTTTTTTATCTCACGTTTCCCTGAAACCCGACCCTCTGCCT
TGCTGCCCACTCCATACCATGGCGAGATGCTGAGACCGAAGTATTCTATT
AGCCATTGATGACCATACGCGATGGCCTAGGCGCTCAACAACCAAGCGGG
CGTAGTTACGAAAATGTGTTATGCGCAGGAGTAGACCCCAAGTTGATTGA
GCAATGAAGACAACTCTGCCACGCTGTATACGACTGCATGCCAGGGGAAG
TACGTTAAGGCCGAGTCACTCTATGAACGTTCACAAGCCATACGAGAGTG
GGTGCTAGGTCCGGAGCATCCCGATGTGGCCACAACGCTCAACAATCTTG
AACGTTTGTTGATGAGCCAGGTGACGATGCCTCTAGAACAAGACAATCCC
TCCGCAATTTTAGATCTCGTTCGGACTGAAATCCGACTCTCTGCCGCACT
GTCCACTCCATATCATGGCAAGTATAGTCTATGTTGAGACCGAGCCACTC
CATCAGCGGTCGTAAGCCATATGAGGGAAGGTGGTGGACCGAGAGTTGTA
GATCCCACATGTTCCGCACTGCTGGTTACGACTGCATGCCAGGGTATGGT
GAGGCTGATCCACTCTACGCAAGGTGTCAGACGATATATATATATGCCAG
GGTTCTGCGCCGTGAGCATGTGCATGTGGCCATGGCCCTCGACAACCGGG
CGAATTGTTGAGAATATGTTTCTCCGCAAATACATATCACGTTTCCGGGC
AAGTGTGTTCGGGCCACTAAAAATGCAGAAAGGTGAAGGGTCCGAAGCAC
CCAATCGTGGCCACAAGACTCAACGGACGGGCGGTGTGAGTGTTGATTCT
TTGGCAGTGACAGGTTTACTAGCCTCCAACATTCGTGCATGAAGCTGCTC
AAAGTATGCCGAGGTGGACCCTCTGTACCTTGCAGTCACTGTGGTTGGAG
GCAGTACGTTGGGCCTTGATCACCACGATCTTGGCACGTGCAAACAACCG
GGCGGGGTTGTTGAAGAATCAGGTGAGAACCCAAGCAATTATCTCAAAAT
TTAAATTGGTAAGGTCCACATTGTCGAGGGACATGTTGTTGTTTTTGGTG
CACTGCCTCACGCTAACCCACACAACCGATGCACATGAGGCAGAACAATT
TTACGAGCGGTCAGAAGCCGTTCGAGACAAGGCCCTGGATCCGGACCACC
CCGATGTGGCCCGATTGCTCAACGACCGGGCGTTGTTGTTGGACAAGATG
GTAAGGCACGGAAATCGTTCACCGTTAGCGGGTACTTGGGAGTAGTTTGC
TCTTATCCAGAAGCTTGTTGAGGACAACCAATTAGCGGCTGCCAGGTTTT
TGACGACGTCATTCCTAATGTGTCGATGTGATTTGTTTGCTACTTGACTG
GACCACTCGCTTCCAACCAACTACAGTTACTGCTTGTGTGTAGTACCTGG
TAAACGAATCGGTGTTTTCACCCCCAAGTCTTTGCACATAGGTGTGGTTT
GCCCACTGGATTAGGTTTTGCGCAACCCTGCTCGCAATCGTCTACAGGAG
CAGTATACGGACGCAGTTCCACTATTGGAGAGGGCCCTCTCAATCCGTAT
GAAAAAGCTTGGGGAAAACCACCCAGACACGGTCAGCACTCAGAACAGCC
TGGACGTTGTGCGAAGGAAGGTTCGTGCACACCTGGGTCGTCTGTTGGTG
GGCCAGCTTCATGCACGACGCGATGATACGCGCGAAGGCCTGGCTCTTAT
GCATATGTACCTGGAAATTGTTTGTTCCATGTCGCAGGGGTGAAACGAGA
TGGAAGAAGCTGCCTGCCGTATATTGGTCACTGCCAACGCCATGATCAAG
GCAGGGCGAAGCTGCGGCAGGCAAGGTTCAACCGACCAATCGCCGGAGTG
TGGTGGCCGACCTGGCCGACCTCTGCCGTATGCGTAACGCGTGATGGCAT
CAGTTTGCTATGAAAAGCTGCAGAGGGAGGCTTAGTAGCTCAACATACGG
GCCTTTTCATTGTACCATACTATGGATCAGACCGCGGTTGGAAGATCGCT
ACAATACACTTGTATAAGACTGACAGATTTGCAAGGCATCATTAGGTCTG
TGTGATCTATGCATCGGAACTGTCTGTCACGACTGAATGTGTGTGGTACA
CGTATGCTCGTTGGGAAGACGATGGGATCGGAGATGATTTCCTGTGGACC
AAGGATAGTAAAGCCATGGGGTTTAATACGCAACATGGTTCTGATGTCGA
TAGAAGTTGTGCGTAAGTGTAGTCCCGAATGTCCGCGAACAGGAAACTGC
GCGCGCCACTATTATTACAGTACGGGCCGGGAGATAAGAAACGTCAAAAT
CGGGTCGAGCCTCAATCCCTTATATTGGGTCGAAGGACCACCCGACGTCG
TCCATTTTCTTAGAAGGCATCTCTTATTCGTTTGGACTGCCGCATCCTCC
TGATTTTCGTATTTCTTATTTTCTTTGTTCTGGCTGAGAACACAACAACA
CACCAAACATTCATGCAGCATTAACCATAAAGCTCGGTGTGGCAAACATT
GGAGTGCGTCGCC back to topCoding sequence (CDS) from alignment at Scaffold_576:147681..150443+ >EsuBft1005_14a-0001 ID=EsuBft1005_14a-0001|Name=EsuBft1005_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=132bp|location=Sequence derived from alignment at Scaffold_576:147681..150443+ (Ectocarpus subulatus male Bft15b)
ATGGAGCAGTATACGGACGCAGTTCCACTATTGGAGAGGGCCCTCTCAAT
CCGTATGAAAAAGCTTGGGGAAAACCACCCAGACACGGTCAGCACTCAGA
ACAGCCTGGACGTTGTGCGAAGGAAGGGGTGA back to top
|