EsuBft980_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft980_5a-0001
Unique NameEsuBft980_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_562contigScaffold_562:297809..300737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LLQ9
ProteomeIdEsuBft980_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl2759|Eukaryota
Length105
Hectar predicted targeting categoryother localisation
Evalue2.16e-72
EggNOG OGs29GBP@1|root,2RPHW@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionDomain present in PSD-95, Dlg, and ZO-1/2.
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft980_5aEsuBft980_5aEctocarpus subulatus male Bft15bgeneScaffold_562 297809..300737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft980_5a-0001EsuBft980_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_562 297809..300737 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft980_5a-0001-exonagat-exon-82758Ectocarpus subulatus male Bft15bexonScaffold_562 297809..297900 +
EsuBft980_5a-0001-exonEsuBft980_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_562 298013..298069 +
EsuBft980_5a-0001-exonagat-exon-82757Ectocarpus subulatus male Bft15bexonScaffold_562 298279..298540 +
EsuBft980_5a-0001-exonagat-exon-82761Ectocarpus subulatus male Bft15bexonScaffold_562 299181..299238 +
EsuBft980_5a-0001-exonagat-exon-82760Ectocarpus subulatus male Bft15bexonScaffold_562 299573..300060 +
EsuBft980_5a-0001-exonagat-exon-82759Ectocarpus subulatus male Bft15bexonScaffold_562 300636..300737 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft980_5a-0001-cdsEsuBft980_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_562 297809..297900 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft980_5a-0001 ID=EsuBft980_5a-0001|Name=EsuBft980_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1059bp|location=Sequence derived from alignment at Scaffold_562:297809..300737+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGAAGGCACCGAGGCGAGAGGGGTTGACGGCGTCAGGACCGGGAG
GGTTCACGCCGAGGCACTCGCGGGACACGGCATCGGCGAGCGGTACCCTG
TGCGATCGCTGGATACGGCAAGTGATGGTGTGGCCAACACGGAGCTCAGG
CTAACGTTCGATGTGTTCCGGCGGTACTCGGAAGCCCTCTCGCGGGCCTT
TCGTCCCTCCGACTCCCACCCTTCCTGGGAGGACCTGCGCATCCGACTGG
GTCTCCACCCGTTGGAGTCGTTGATCATGGGGGAAGAGTTCGTCGCGGAG
GTCCCCCGTTCTTCCTCTTCGCAGCTGGACCTGATGGCCCTCGCCGGGTG
GTCCGGAAACCTCTTTCTCACGGACCGCCACCTGCTTCTGCACTTTCCCA
AGCGGCAGCAGGCTCGAGTTGTGCCCCTCGGGAGCGTTCAGGATGTTCGG
GGGTCCAGCAGCCGCGCTGTGGCCAAGGAGGCCTCAGCCGCCGCCGCCGC
CGCCGCAGCCACCGCCGCCGCCGCGGCAGCGGCGGCAGCGGCGGCGGAGG
CAGCTTCCGCACCGCCAACACCAGGAGCACCATCCTCCACCGCGCCGACC
AGCAGCACCTCGACTTCCAGACCGAACGGCGCCCATCCCAACGGCTCCGG
CGAATGGCCGCCAACGCTGCCGTCAGCGGCGGCCGGAGGATGCAACGGTG
GCGGCGGTGGTGGCGGAAAGGTGGAGCGGGGACCGAGCGGCCACCGTACC
CCAACTGGTGGCGGCAGCGGCGGGTTTGGGGTTGGGGTTGGTTTCGGAGG
TAATGGCAGCGGCGGGTTCGGCGGCGGCGGCGGTGCGAGGGGGCACGGCG
GAGGGGTGGAGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGGTGGAA
GACGGAGCGGAGGTTCGCAAGGGCGAACGGAAGGCGTACCGGCTGGTACT
GACAAAGGTGAAGATGCAGAGGTTAGTGTCCAAGCCAGAGGAGTGCGGCG
GAACTCGGCAGGAGTGGCTCGACTGCCTACGGGAGATGGTGGAGGTGAAG
TTTAAGTAA
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protein sequence of EsuBft980_5a-0001

>EsuBft980_5 ID=EsuBft980_5|Name=EsuBft980_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=352bp
MGEGTEARGVDGVRTGRVHAEALAGHGIGERYPVRSLDTASDGVANTELR
LTFDVFRRYSEALSRAFRPSDSHPSWEDLRIRLGLHPLESLIMGEEFVAE
VPRSSSSQLDLMALAGWSGNLFLTDRHLLLHFPKRQQARVVPLGSVQDVR
GSSSRAVAKEASAAAAAAAATAAAAAAAAAAAEAASAPPTPGAPSSTAPT
SSTSTSRPNGAHPNGSGEWPPTLPSAAAGGCNGGGGGGGKVERGPSGHRT
PTGGGSGGFGVGVGFGGNGSGGFGGGGGARGHGGGVEEAAAAAAAAATVE
DGAEVRKGERKAYRLVLTKVKMQRLVSKPEECGGTRQEWLDCLREMVEVK
FK
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mRNA from alignment at Scaffold_562:297809..300737+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft980_5a-0001 ID=EsuBft980_5a-0001|Name=EsuBft980_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2929bp|location=Sequence derived from alignment at Scaffold_562:297809..300737+ (Ectocarpus subulatus male Bft15b)
ATGGGGGAAGGCACCGAGGCGAGAGGGGTTGACGGCGTCAGGACCGGGAG
GGTTCACGCCGAGGCACTCGCGGGACACGGCATCGGCGAGCGGTACGTGG
GTACATAAGATGACACCGTGCTATGTGGTGATATTGGTGGAGTTCGCACC
CTGTGTGATCGTTCGTCAAGGGAGATGAGAGACGGGTGGTAGTGAAGTTG
GCAGGTACCCTGTGCGATCGCTGGATACGGCAAGTGATGGTGTGGCCAAC
ACGGAGCTCAGGTTACAGTGACCACCATCATGAATGTCCTTACCCCCCTC
CCAACCCTGACCTCTCGCGACGGGACGCATTCTCAGATCTCTGGCCAAGC
TGCTGGCATCGTGCCGTGGGACAAGAAAAACAAAAACCTTCTGTGCAACA
GTGAAGAAACGGGGCACTCCCTTCCCCCCCCCCCCTCTTTCGTTCCGCCT
CGTTCCTGAAACCGACCAAGGCTAACGTTCGATGTGTTCCGGCGGTACTC
GGAAGCCCTCTCGCGGGCCTTTCGTCCCTCCGACTCCCACCCTTCCTGGG
AGGACCTGCGCATCCGACTGGGTCTCCACCCGTTGGAGTCGTTGATCATG
GGGGAAGAGTTCGTCGCGGAGGTCCCCCGTTCTTCCTCTTCGCAGCTGGA
CCTGATGGCCCTCGCCGGGTGGTCCGGAAACCTCTTTCTCACGGACCGCC
ACCTGCTTCTGCACTTTCCCAAGCGGCAGCAGGTGTTGTTATTGCTGTTG
CCGTGCTGTTGTTTCTGTTGCCGTTGTTGTTGTTGCTGTTGCCGTTGCTA
TTGTTGCTGTTGCCGTTGCTGTGGCTGTGGCTGGTGTTGCTGCCGCTGGA
GTTTTCTAGGAACAAAGTGACGTCGCCGTGGATGACGTCACATGTCGACC
AGAGTTTTTTGAGGATTGGCCAAACAGAAAACTGCGGGCACCTCTTTTCT
CTCTCTCGGTCCGTTGTGTATGCTGCTACGTCTGTTTACCCCTTTTTACG
TGGAGTGCTTGGCTTGACCGGTACCCTTTGTATTGTTTCACCATTCGCCT
TGGAAGGTACATGTACTCACCGCGTTCGGCAATGATGTATCCGTTCTCGC
GCATCTGTGCACCTTTCTTTATCTTGCGCTTTTCGTGGGCCCCCCTTTTG
CACGGTCCTCCTGGCACTTTCGCGTATCGCAATCATCAGCGGCGTTGCCA
CGCCTGCGGAAGCTTTTGCGCTCCACGGTTTTGTTGGGGCCCTTTGCTTT
TTTCGTTGAGATGTTTACCATTTGGTTGCGGCTTGCCGTACAAAGAATAA
TAATATAGAAGTATATTTTTCCGAACATAATGCATTTCCCCATTTTTTTT
TTTTTTGTCATGACATGGCCAGGCTCGAGTTGTGCCCCTCGGGAGCGTTC
AGGATGTTCGGGGGTCCAGCAGCCGCGCTGGTCCGTTCACGGTGGACGAT
GCCATCGAGCTCTTCGGCTGCGAGGCAAGAGCTTGGTACTTGCTGCGGCT
GTTGTTGTCGCTGTCGTTGTTGTTGCTGCTGCTGCTGTAGCTGCTGCTGT
TGCTATTGCTGTTGCTGTTGCTGCTGTTGCTGCTGTTGCTGCTGTTGCTT
TTGCTGTTGCTGTTGCTGCTGTTGCTGCTGCTGCTACTGCTGCTGCGGCT
GCTACATCTGCGACTCGTTCGATCTTGACCGTAACACACCTAATCAATGA
AAATCACTCGTCCTTCTTTAGGTCCACACGGTCCCCCTCGGGCTTACCCG
CGACTCATTAACAGTGGCCAAGGAGGCCTCAGCCGCCGCCGCCGCCGCCG
CAGCCACCGCCGCCGCCGCGGCAGCGGCGGCAGCGGCGGCGGAGGCAGCT
TCCGCACCGCCAACACCAGGAGCACCATCCTCCACCGCGCCGACCAGCAG
CACCTCGACTTCCAGACCGAACGGCGCCCATCCCAACGGCTCCGGCGAAT
GGCCGCCAACGCTGCCGTCAGCGGCGGCCGGAGGATGCAACGGTGGCGGC
GGTGGTGGCGGAAAGGTGGAGCGGGGACCGAGCGGCCACCGTACCCCAAC
TGGTGGCGGCAGCGGCGGGTTTGGGGTTGGGGTTGGTTTCGGAGGTAATG
GCAGCGGCGGGTTCGGCGGCGGCGGCGGTGCGAGGGGGCACGGCGGAGGG
GTGGAGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGGTGGAAGACGG
AGCGGAGGTTCGCAAGGGCGAACGGAAGGCGTACCGGCTGGTACTGACAA
AGGTACGGCATCAGGTCGGGGCGGGGGGTTGACGGAGGAAAACAGCAGGG
AGGGATCACGTGCTAATTATTGTTTGTTTTATTTGCTTCTCTTGGTACAA
CGTGGCTTCTGGGCCTCAGGTAAAGTCTTGTTGTGGGGAACCGCCCCCCG
CTACTCCCCCCCATGAATACAGCCGCATGTTGAACAAGCCGTCCTCTGGG
GGGAAACGCCTTCCAACAATCCCACTCGACATTCGGACATGAAGGGGCGC
GAGACTCTGTCCTTGTTCTGTGTGGCGCTGTCATTCGTATGCTTACGTTC
GTACGTCCGTTGGTTTCGGTCCCAAGACACACGGTGGGATGCTACAAACA
CCCTGGGGGGGTACGAGGTACCCCGGGCCGCGCGCCCCCCCGCCCACCGT
CCGTGAAACACTTGTTCTGCCGCACGGAGCCGTCATTCCCCATCTAGCTG
CGTGGATGTGTTCGTGGCAGACAGTCCTAAACAGGGCGAGTTGTATGTTA
TCTCTCTTACCAACTCAGCATGACTTCCCCCCCCCCCCACTTTTCGGGAC
GGAATCCCCCCCTGAAACCCCCTACAGGTGAAGATGCAGAGGTTAGTGTC
CAAGCCAGAGGAGTGCGGCGGAACTCGGCAGGAGTGGCTCGACTGCCTAC
GGGAGATGGTGGAGGTGAAGTTTAAGTAA
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Coding sequence (CDS) from alignment at Scaffold_562:297809..300737+

>EsuBft980_5a-0001 ID=EsuBft980_5a-0001|Name=EsuBft980_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1059bp|location=Sequence derived from alignment at Scaffold_562:297809..300737+ (Ectocarpus subulatus male Bft15b)
ATGGGGGAAGGCACCGAGGCGAGAGGGGTTGACGGCGTCAGGACCGGGAG
GGTTCACGCCGAGGCACTCGCGGGACACGGCATCGGCGAGCGGTACCCTG
TGCGATCGCTGGATACGGCAAGTGATGGTGTGGCCAACACGGAGCTCAGG
CTAACGTTCGATGTGTTCCGGCGGTACTCGGAAGCCCTCTCGCGGGCCTT
TCGTCCCTCCGACTCCCACCCTTCCTGGGAGGACCTGCGCATCCGACTGG
GTCTCCACCCGTTGGAGTCGTTGATCATGGGGGAAGAGTTCGTCGCGGAG
GTCCCCCGTTCTTCCTCTTCGCAGCTGGACCTGATGGCCCTCGCCGGGTG
GTCCGGAAACCTCTTTCTCACGGACCGCCACCTGCTTCTGCACTTTCCCA
AGCGGCAGCAGGCTCGAGTTGTGCCCCTCGGGAGCGTTCAGGATGTTCGG
GGGTCCAGCAGCCGCGCTGTGGCCAAGGAGGCCTCAGCCGCCGCCGCCGC
CGCCGCAGCCACCGCCGCCGCCGCGGCAGCGGCGGCAGCGGCGGCGGAGG
CAGCTTCCGCACCGCCAACACCAGGAGCACCATCCTCCACCGCGCCGACC
AGCAGCACCTCGACTTCCAGACCGAACGGCGCCCATCCCAACGGCTCCGG
CGAATGGCCGCCAACGCTGCCGTCAGCGGCGGCCGGAGGATGCAACGGTG
GCGGCGGTGGTGGCGGAAAGGTGGAGCGGGGACCGAGCGGCCACCGTACC
CCAACTGGTGGCGGCAGCGGCGGGTTTGGGGTTGGGGTTGGTTTCGGAGG
TAATGGCAGCGGCGGGTTCGGCGGCGGCGGCGGTGCGAGGGGGCACGGCG
GAGGGGTGGAGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGGTGGAA
GACGGAGCGGAGGTTCGCAAGGGCGAACGGAAGGCGTACCGGCTGGTACT
GACAAAGGTGAAGATGCAGAGGTTAGTGTCCAAGCCAGAGGAGTGCGGCG
GAACTCGGCAGGAGTGGCTCGACTGCCTACGGGAGATGGTGGAGGTGAAG
TTTAAGTAA
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