EsuBft980_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft980_4a-0001
Unique NameEsuBft980_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_562contigScaffold_562:291496..295496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LLQ9
ProteomeIdEsuBft980_4
Protein domainsIPR011993
Protein domainsIPR001849
Protein domainsSSF50729
Ownerapollo_admin@sb-roscoff.fr
Nb exon7
Max annot lvl2759|Eukaryota
Length150
Hectar predicted targeting categoryother localisation
Evalue5.84e-153
EggNOG OGs29GBP@1|root,2RPHW@2759|Eukaryota
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-04_004840.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionDomain present in PSD-95, Dlg, and ZO-1/2.
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft980_4aEsuBft980_4aEctocarpus subulatus male Bft15bgeneScaffold_562 291496..295496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft980_4a-0001EsuBft980_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_562 291714..295496 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft980_4a-0001-exonagat-exon-82753Ectocarpus subulatus male Bft15bexonScaffold_562 291496..291730 +
EsuBft980_4a-0001-exonagat-exon-82756Ectocarpus subulatus male Bft15bexonScaffold_562 292288..292309 +
EsuBft980_4a-0001-exonEsuBft980_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_562 292601..293098 +
EsuBft980_4a-0001-exonagat-exon-82755Ectocarpus subulatus male Bft15bexonScaffold_562 293596..293733 +
EsuBft980_4a-0001-exonagat-exon-82752Ectocarpus subulatus male Bft15bexonScaffold_562 294222..294565 +
EsuBft980_4a-0001-exonagat-exon-82754Ectocarpus subulatus male Bft15bexonScaffold_562 295161..295383 +
EsuBft980_4a-0001-exonagat-exon-82751Ectocarpus subulatus male Bft15bexonScaffold_562 295452..295496 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft980_4a-0001-exonagat-five_prime_utr-15460Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_562 291496..291713 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft980_4a-0001-cdsEsuBft980_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_562 291714..291730 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft980_4a-0001 ID=EsuBft980_4a-0001|Name=EsuBft980_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1505bp|location=Sequence derived from alignment at Scaffold_562:291496..295496+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACAGCACTTCAGACAGCAATATGCTGTAGTCGACAATCTTACGTTTTGGT
AAAGAGTGGGACAGGGAGGGGGTGATGCTACTGTAGTCGAACGGTGGGAC
GGACGTGCAGTTCAGTTTTGGGCACGCATACGGTGCTGCAGGGATTTTTA
GGTGTACCTCTTCGGGCTCTTGGATACCTTTTTCTCGTTATATGTGTGCG
TGTTCTTTAGATCCTCAGATGGCTCTAGCACTTTCGCCGACCAGCGAAAC
CCATGGAGTTCTAGCGCCGGACGGGCTGCAGCTGTTCCGCGCGCCCTCTC
CCTCCGCCAGGCTCGACTGGGTGTCGGCCTTCGCCGTCGTTACCACCGCC
CACGAGCTCGGACTTTGCAAGACCCCGCCGCTGCCGCCGCCGCCGCCGAC
ACCGCCATCGCCCACGACCGCTGCGGCGACGGCCGGTGACGCACGAGAAG
AATCGTCGGGAGCGCCGAGGCCGTCGAGGTTTGGGAGGACGTGGGGGTAC
AGGGGCGGGCGGAAGAGCGATCCGGAGGGGGAAGACGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGATCAGGGAGGGGCGTGGGGGGAGACGGCGG
CAATCGGGGGCCGCGTCGCGGCGGCGGGGGTGAGGGCTAGGGTGACCACC
GCGTCGCCCCCGAGGAGAGTGATGCAGGGCTTCCTGAGGAAGAGGGCGGC
GGCGAGGTCGTGGGGATCGTCGGGGGTGTGGGAGTACCGCTGGGTGGTGT
TAAGGGATGATGGGCGGCTGCTGTGGTACCTCTCGGTGCCCGCGGACCCC
TGGGAGGTGCCGAACGGTTACCTCTGCCTCCGCGGCGCAAGGGTTTCGTT
TTCAGAAGGCGTTTTGCTCAGGAACAACCTCCGGGAAGACGAGGTGCAGG
GGGACCGGCTGTGCCCGTTCGTGGTGGATGTCATCGAACACGGCGATGGC
GACGGCGACGGCGATAGCGGCGGTGACCCAGCAGTGCTGCAGCAGGCCCA
TTGGCAACAACAACAACAACAGGAGCAGCAGGAGCAGCAGGAACAGCTGC
GGAGACGTCGCGGGCGGGGGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAG
GAGGCGAGGCAATCTGACCGACCGAGAGCACGTTCGTCGGAGCAGCCACA
ACAGCAGCGAGAGGGAGAGAGGCGGGTGGTGTTCCTGAGCACATGGGGAA
CAGAGGAACGAGCGGAGTGGGTCGAGGCTCTCTCAATGTACACACAAAGC
AGCGGCAGCGGCGGTGCCGGTGGTGGCAAGAACGACCCACGCGCCGACCG
CGGCAGGGAGCTGAGGCTCAGGGCGGAAGAACGGCGAAGGAAGGGGCTTG
GGCGCCTCTTGGAGACGCCGGAGGAGGTCTTGAGCAATCCTCACGAGGCC
TTCGCCCTGCTGGTCGGAAGCGGCAGCGGCGGCGGAGTGACGAGGGGCGA
GTTCTGCGAGGGAGTGCACCGGCCAAGGTGTGGCGTGCATTCCGGGGGAG
CCTAG
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protein sequence of EsuBft980_4a-0001

>EsuBft980_4 ID=EsuBft980_4|Name=EsuBft980_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=428bp
MALALSPTSETHGVLAPDGLQLFRAPSPSARLDWVSAFAVVTTAHELGLC
KTPPLPPPPPTPPSPTTAAATAGDAREESSGAPRPSRFGRTWGYRGGRKS
DPEGEDEEEEEEEEEEEDQGGAWGETAAIGGRVAAAGVRARVTTASPPRR
VMQGFLRKRAAARSWGSSGVWEYRWVVLRDDGRLLWYLSVPADPWEVPNG
YLCLRGARVSFSEGVLLRNNLREDEVQGDRLCPFVVDVIEHGDGDGDGDS
GGDPAVLQQAHWQQQQQQEQQEQQEQLRRRRGRGQQQQQQQQQEEARQSD
RPRARSSEQPQQQREGERRVVFLSTWGTEERAEWVEALSMYTQSSGSGGA
GGGKNDPRADRGRELRLRAEERRRKGLGRLLETPEEVLSNPHEAFALLVG
SGSGGGVTRGEFCEGVHRPRCGVHSGGA
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mRNA from alignment at Scaffold_562:291496..295496+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft980_4a-0001 ID=EsuBft980_4a-0001|Name=EsuBft980_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4001bp|location=Sequence derived from alignment at Scaffold_562:291496..295496+ (Ectocarpus subulatus male Bft15b)
ACAGCACTTCAGACAGCAATATGCTGTAGTCGACAATCTTACGTTTTGGT
AAAGAGTGGGACAGGGAGGGGGTGATGCTACTGTAGTCGAACGGTGGGAC
GGACGTGCAGTTCAGTTTTGGGCACGCATACGGTGCTGCAGGGATTTTTA
GGTGTACCTCTTCGGGCTCTTGGATACCTTTTTCTCGTTATATGTGTGCG
TGTTCTTTAGATCCTCAGATGGCTCTAGCACTTTCGTGACCACGGGCTGA
GAGTCTTTGCTAGATTTTGGCATTTAGCAACTGACATACGGTTTAATGTG
AAGACAACAACATACCTGCGGGTTTGATGTTGTTGTCGATTCTGATTCCT
CCAAGCCACATGTAATGGCAACGAGCTTCAGCGCGATCGTTCAATCTACC
GTCAAGTGTGGTTCTGTGTCACCCCCTCTCGGAAGGTCGTTACTCGCAGT
ACTATGTACCTTCACCGTGCGACCTTGACTTTTCTGCTGAGGAACTGATG
CCCGCTGCCTCACTTTAGAATTGTCTCCACGTTGCCAGTCTTCAATATTG
AAGTAATTTGAAGGAAGGTGGGGTTCGTTTTTCTCCCTGTTAACACAGTC
AACTATTCTGCTGTTTTCGCAAAAGAATGCGCTGCAAGTATTGTCAGAGA
GAGGCATGCCGGGACTTGAATCCCCGACCTTATCCATCCACAGGAGAAAT
ACGCCAACATCTTTTGTGTTGCCTTGAGGGTTTGCCGGTCACCAAGCATG
GGGCGCAATCACAAATTGTCGTGGGCCTTTGTTTCTTCTCAGGCCGACCA
GCGAAACCCATGGAGTAAGTCAGAGCCGGATCGAAGACGTCACTACTGCA
GGCGTGCCGAAGGAAAACTCTCGAAAGCGGAAGTTATGAACACCTGAAAA
CGACCCGTAGGGTGTGTTTGGATGCAAAAATAGCCTGTTCTTGTATTCTT
CTGTTTCTTCTCCTGTATCCGCTGAGACGTTTATTCGGAGATGAGTCTGC
ACCCATGGCATACGTAAACAGCTGTTTCGCAATACCAAACAAATTGTCAA
GGATTCATTTGTATGTTCCATTTGCTTGTTGCGTTCCTCCCTATCGCTAC
TGTAGGTTCTAGCGCCGGACGGGCTGCAGCTGTTCCGCGCGCCCTCTCCC
TCCGCCAGGCTCGACTGGGTGTCGGCCTTCGCCGTCGTTACCACCGCCCA
CGAGCTCGGACTTTGCAAGACCCCGCCGCTGCCGCCGCCGCCGCCGACAC
CGCCATCGCCCACGACCGCTGCGGCGACGGCCGGTGACGCACGAGAAGAA
TCGTCGGGAGCGCCGAGGCCGTCGAGGTTTGGGAGGACGTGGGGGTACAG
GGGCGGGCGGAAGAGCGATCCGGAGGGGGAAGACGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGATCAGGGAGGGGCGTGGGGGGAGACGGCGGCA
ATCGGGGGCCGCGTCGCGGCGGCGGGGGTGAGGGCTAGGGTGACCACCGC
GTCGCCCCCGAGGAGAGTGATGCAGGGCTTCCTGAGGAAGAGGGCGGCGG
CGAGGTCGTGGGGATCGTCGGGGGTGTGGGAGTACCGCTGGGTGGTGTTA
AGGGTGGGTCGGGGCTCGGAGCGGCGCTCTCCGGCGCAATGCTTCATGTG
TGTGTGTGCGTACCGTTGCGAATCCACTGGGTGTTCATGCGCCGTTCGAG
TATACTCGTCGGCCGTGTGGTCCACAAGCGTTTTTTGCTCTATAAGGGAC
GTAGGCAGAACAAAACGAAGAACGGCGCTACCGTTGAGCGTGAGCGGCGG
CCGCGGGGGTCTGGTCCTTGCCGCAGCGTGAGAGAGCGATGGAGTGTGGG
GGTTTGTTTTTCAACCTCTTCTTCGGGGGCGTCGGGACTGTCAATAGCGA
GATGGGATGTTTTCGCGCCTTCCAACTTGTCCATCGAAGTCGCCATCGCA
CCTGCCTAACCTTAAGGTTTGATACTTTTTCCGATCGCAACTGGAACACT
TCGACGGCTCATCGACCACTGTTGTGTACTTTGCGTGTGTGTCTTTGCTT
TTTCGTGGCGACGCGCGTCCAATCAATCGGCTGCTGTATTTTTTACCCAG
GATGATGGGCGGCTGCTGTGGTACCTCTCGGTGCCCGCGGACCCCTGGGA
GGTGCCGAACGGTTACCTCTGCCTCCGCGGCGCAAGGGTTTCGTTTTCAG
AAGGCGTTTTGCTCAGGAACAACCTCCGGGAAGACGAGGTACGGCAACGG
TTCCCGTAGCCGCGATACGCACGTATCCAGACTTCTTTTCGGTTCTTTTT
GGCTGTTCGAGTCGAAGAACGTGTAAGCTGCGAGAGCGTTTTGGAATCGT
CACACTTCAGCTGGTTGCGAGTCACACTTCAGCTGGTTGTGAGTCACACT
TCAGCTGGTTGCGAGTCCTGCCGCCTGCTTTTATTTTCATCTCGCATCGC
CCCTTGATGACGCTGCTGTCTTCTCGTGAGCCCACTCCGGAGTGATTACT
TGTAGCAACGTACACATGGTCGGGGTGACTGACTCCTCGGTAGTGTTGGC
TGCGGGGTAGTTTCGTAGTGCGTGCAGGTGGTTTAAAAATGAAAACCACG
GTTTAGGAAACATCGTAATGATGGTTTATATGCCCTTGTATCGTATCATT
TTTTTTCTATCCTGGGTTCCTATTTTTTCGGTCCTCACCAAGAACTAAGA
GCCGTTTCCCTCGTGCGCGCTGAAAGGTGCAGGGGGACCGGCTGTGCCCG
TTCGTGGTGGATGTCATCGAACACGGCGATGGCGACGGCGACGGCGATAG
CGGCGGTGACCCAGCAGTGCTGCAGCAGGCCCATTGGCAACAACAACAAC
AACAGGAGCAGCAGGAGCAGCAGGAACAGCTGCGGAGACGTCGCGGGCGG
GGGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGGAGGCGAGGCAATCTGA
CCGACCGAGAGCACGTTCGTCGGAGCAGCCACAACAGCAGCGAGAGGGAG
AGAGGCGGGTGGTGTTCCTGAGCACATGGGGAACAGAGGAACGAGCGGAG
TGGGTCGAGGCTCTCTCAATGTGAGCTAGCTAGCTTGTTTTCGGGCTCTC
CGAGGGTGCTTCGGGGGCGGCGGCGGTGGGGGGTAATTGGATTGGGTTTG
GTCTTCGCGGGGCTGCTTTTTTTTTCTTTTCATCCAGAGTGCAGCTGCTC
TTGCGTTGTTTTTGGCGTGGTACTCCTCTGTCGCTATCTCTGTCTCTGTG
CACATCTGCCTGTCTGTGTGTCTGTGTGTGTATGTGTCTGTCTGTCTGTC
TGTCTGTCTGTCTGCCTCCCTTCCATCACCTTCTCCGTGCCCTAGGGTGA
GCGATGCTCGAAAGACGTGGGAACAAACAAACGACTGTCCTGCGTTGCCC
CCCGGGCCTGTACGTCTCATGGCTGGGGGTTTGGCGCCATCAAAGCACAA
TTGTGTGGGACTGACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCGCACG
CAGAAGGTCGGCGGTGGATCATCCCCATCATCCCCCTTCTTCCCCTCATC
CCCCCGAAGCGTGCCTGCCCTCCCGCAGCTGTTTGTCGACGTCCTTTTGG
CGTTCCGGTGTTCTCTCTTCAAAGGTTGAGGGCCCTTGTTTTGTTCTCGT
GGTTCGCGTTTGCAGGTACACACAAAGCAGCGGCAGCGGCGGTGCCGGTG
GTGGCAAGAACGACCCACGCGCCGACCGCGGCAGGGAGCTGAGGCTCAGG
GCGGAAGAACGGCGAAGGAAGGGGCTTGGGCGCCTCTTGGAGACGCCGGA
GGAGGTCTTGAGCAATCCTCACGAGGCCTTCGCCCTGCTGGTCGGAAGCG
GCAGCGGCGGCGGAGTGACGAGGGGCGAGTTCTGCGAGGTATGCTGAGTT
CCCCCGGCGGGAAACGTTGTGCTTCCCTGAAAGATGCTGCGTTTGGTGAA
AGGCAGGGAGTGCACCGGCCAAGGTGTGGCGTGCATTCCGGGGGAGCCTA
G
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Coding sequence (CDS) from alignment at Scaffold_562:291496..295496+

>EsuBft980_4a-0001 ID=EsuBft980_4a-0001|Name=EsuBft980_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1287bp|location=Sequence derived from alignment at Scaffold_562:291496..295496+ (Ectocarpus subulatus male Bft15b)
ATGGCTCTAGCACTTTCGCCGACCAGCGAAACCCATGGAGTTCTAGCGCC
GGACGGGCTGCAGCTGTTCCGCGCGCCCTCTCCCTCCGCCAGGCTCGACT
GGGTGTCGGCCTTCGCCGTCGTTACCACCGCCCACGAGCTCGGACTTTGC
AAGACCCCGCCGCTGCCGCCGCCGCCGCCGACACCGCCATCGCCCACGAC
CGCTGCGGCGACGGCCGGTGACGCACGAGAAGAATCGTCGGGAGCGCCGA
GGCCGTCGAGGTTTGGGAGGACGTGGGGGTACAGGGGCGGGCGGAAGAGC
GATCCGGAGGGGGAAGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGATCAGGGAGGGGCGTGGGGGGAGACGGCGGCAATCGGGGGCCGCGTCG
CGGCGGCGGGGGTGAGGGCTAGGGTGACCACCGCGTCGCCCCCGAGGAGA
GTGATGCAGGGCTTCCTGAGGAAGAGGGCGGCGGCGAGGTCGTGGGGATC
GTCGGGGGTGTGGGAGTACCGCTGGGTGGTGTTAAGGGATGATGGGCGGC
TGCTGTGGTACCTCTCGGTGCCCGCGGACCCCTGGGAGGTGCCGAACGGT
TACCTCTGCCTCCGCGGCGCAAGGGTTTCGTTTTCAGAAGGCGTTTTGCT
CAGGAACAACCTCCGGGAAGACGAGGTGCAGGGGGACCGGCTGTGCCCGT
TCGTGGTGGATGTCATCGAACACGGCGATGGCGACGGCGACGGCGATAGC
GGCGGTGACCCAGCAGTGCTGCAGCAGGCCCATTGGCAACAACAACAACA
ACAGGAGCAGCAGGAGCAGCAGGAACAGCTGCGGAGACGTCGCGGGCGGG
GGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGGAGGCGAGGCAATCTGAC
CGACCGAGAGCACGTTCGTCGGAGCAGCCACAACAGCAGCGAGAGGGAGA
GAGGCGGGTGGTGTTCCTGAGCACATGGGGAACAGAGGAACGAGCGGAGT
GGGTCGAGGCTCTCTCAATGTACACACAAAGCAGCGGCAGCGGCGGTGCC
GGTGGTGGCAAGAACGACCCACGCGCCGACCGCGGCAGGGAGCTGAGGCT
CAGGGCGGAAGAACGGCGAAGGAAGGGGCTTGGGCGCCTCTTGGAGACGC
CGGAGGAGGTCTTGAGCAATCCTCACGAGGCCTTCGCCCTGCTGGTCGGA
AGCGGCAGCGGCGGCGGAGTGACGAGGGGCGAGTTCTGCGAGGGAGTGCA
CCGGCCAAGGTGTGGCGTGCATTCCGGGGGAGCCTAG
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