EsuBft1103_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1103_2a-0001
Unique Name	EsuBft1103_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_561	contig	Scaffold_561:389739..391382 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1103_2
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SignalP-noTM
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	164
Hectar predicted targeting category	signal peptide
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1103_2a	EsuBft1103_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_561 389739..391382 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1103_2a-0001-exon	EsuBft1103_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_561 389739..391382 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1103_2a-0001-exon	agat-five_prime_utr-623	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_561 389739..390530 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1103_2a-0001-cds	EsuBft1103_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_561 390531..391160 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1103_2a-0001-exon	agat-three_prime_utr-991	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_561 391161..391382 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1103_2a-0001	EsuBft1103_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_561 390531..391160 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_561:389739..391382+
coding sequence from alignment at Scaffold_561:389739..391382+

spliced messenger RNA

>EsuBft1103_2a-0001 ID=EsuBft1103_2a-0001|Name=EsuBft1103_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1644bp|location=Sequence derived from alignment at Scaffold_561:389739..391382+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAGAGACAGAAACGACAGCACAGACAGCATCGACCGGAGTGCGGTGGTGG
CACGTGTGCACAGACACACACAGGATGGTGCCTGTCCCGTCGACGTGCTT
GCTTTGCGGAAGATCCAAAAAGAGTTGATCGGAGATTGTGCGAAAAAGTC
CGCCTGGAAGGTTTCCGAGGAAAAAGAGTTCAGGCACCGAGAGAGGAAAA
TCCGCGTGGAGGAGCGTGGAGAGATATCGTGGAGAAGGGAAACATAAGAG
GTAGCAGTGAAGGGGCTGGTAGAGGTGAGAGCTTGTTGAAGTCAGTTTGG
ATCCATTGCGGCGACGATCCACTGATACGAGAGGGCAACATCGGAACACG
TGTACGCGACACACACACGTGGTCCCGGAGAGATCCAAACAAAAGCTCGA
TCGGAGATCCTGCAGCCTCGCTTCTGGAAGAGTCAACGGCAGGAGCAGCT
CAGCGTGGTGAGAGGAAGATCAGGGGACAGGCAGCAGCAGCAGCAGCGGG
AGGAAGCAACAGTCAAAGGGGCCGAGGAGAAGGAAGCTTCGAGACACGCG
TGCTGGGAGCACACACACACGTGGAGGCCCGAACGGAACTGTGCTCGCGA
CCCCGTGATCGATTGGAGATCGAGCAAGGCGGTCGCTAGGTCCAGCAGCA
GCAGACGGAGCCGAGGTACCGAGAGCGGGATTGGGTGCAAAGAGCATCTA
GAAGATCTCTGAAACCTGAACAGAAGATTGACAGACGTCAAAGGAATAGC
AGATCATTACTGAGTAGAAACCTTTGAACGTACGTCGGCGGCATGCACAT
GTTCCGCGCCCAGTTGTTGTCGTTGACTGTTTTGGCGTCTTTCTTAGGAG
TGCGACGAGAAAGGACCCTGGCTCTTGCGGTTGAAGGTGGCGGGGAAGTA
GGAACAGGGGGTGGCAGTGTCGGGGGTCTGGGGGAACATGGGCTTGAGTG
GGGGTTGCCTCAGAAAGAGCAAGACGGCGGATGTTTCTCTCTTGGTGTGA
CCGGTGGCAGTATCGATCAGCAATGCCGCAAAGACGTTTGTGCGCCGAAA
TATGGGTGCGACAGCTTTAACCTAACCACTTCGGTGGAAAGCGGATTTCT
GTTCGATACGGTGTCGGGAGTGCTGAGGGGGGAGGGCTTGGCCCTTGTGG
TTGCAGGTGGCAAGGAAGTAGGAACAGGGGGTGGCAGTGTCGGGGGTCTG
GGGGAACATGGGCTTGAATGGGGGTTGCCTCAGAAAGAGCAAGACGGCGG
ATGTTTCTCTCTTGGTGTGACCGGTGGCAGTATCGATCAGCAATGCCGCA
CAGACTTTTGCGCGCCGAAATATGCGTGCGACAGCTTCAACCTAACCACT
TCGGTGGAAAGCGGATTTCTGTTCAATACGGTGTCAGGGGTACCAGGGAA
GACGGGGCCGAGTTTTGTTTGATTTCGGGTGGATGAGGTTGGGGTTTTGT
TCGTTTTTCTCCATATCTAAGGTTCGTGCCTAGAGTTCAGCTGTATGTAG
TGTTTCGACAAAAGTTTTGTTGACTTAGAGGCAAACATTCCTAGCTATTG
GGCATCGAGTTCATTTGGCTTGGCATGACGGCCTTTACGATCGACTTTTT
ATGTATGTCTGCATTTATCTGCAATTGTCGGAGGGCAAACAAAA

protein sequence of EsuBft1103_2a-0001

>EsuBft1103_2 ID=EsuBft1103_2|Name=EsuBft1103_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=209bp
MHMFRAQLLSLTVLASFLGVRRERTLALAVEGGGEVGTGGGSVGGLGEHG
LEWGLPQKEQDGGCFSLGVTGGSIDQQCRKDVCAPKYGCDSFNLTTSVES
GFLFDTVSGVLRGEGLALVVAGGKEVGTGGGSVGGLGEHGLEWGLPQKEQ
DGGCFSLGVTGGSIDQQCRTDFCAPKYACDSFNLTTSVESGFLFNTVSGV
PGKTGPSFV

mRNA from alignment at Scaffold_561:389739..391382+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1103_2a-0001 ID=EsuBft1103_2a-0001|Name=EsuBft1103_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1644bp|location=Sequence derived from alignment at Scaffold_561:389739..391382+ (Ectocarpus subulatus male Bft15b)
CAGAGACAGAAACGACAGCACAGACAGCATCGACCGGAGTGCGGTGGTGG
CACGTGTGCACAGACACACACAGGATGGTGCCTGTCCCGTCGACGTGCTT
GCTTTGCGGAAGATCCAAAAAGAGTTGATCGGAGATTGTGCGAAAAAGTC
CGCCTGGAAGGTTTCCGAGGAAAAAGAGTTCAGGCACCGAGAGAGGAAAA
TCCGCGTGGAGGAGCGTGGAGAGATATCGTGGAGAAGGGAAACATAAGAG
GTAGCAGTGAAGGGGCTGGTAGAGGTGAGAGCTTGTTGAAGTCAGTTTGG
ATCCATTGCGGCGACGATCCACTGATACGAGAGGGCAACATCGGAACACG
TGTACGCGACACACACACGTGGTCCCGGAGAGATCCAAACAAAAGCTCGA
TCGGAGATCCTGCAGCCTCGCTTCTGGAAGAGTCAACGGCAGGAGCAGCT
CAGCGTGGTGAGAGGAAGATCAGGGGACAGGCAGCAGCAGCAGCAGCGGG
AGGAAGCAACAGTCAAAGGGGCCGAGGAGAAGGAAGCTTCGAGACACGCG
TGCTGGGAGCACACACACACGTGGAGGCCCGAACGGAACTGTGCTCGCGA
CCCCGTGATCGATTGGAGATCGAGCAAGGCGGTCGCTAGGTCCAGCAGCA
GCAGACGGAGCCGAGGTACCGAGAGCGGGATTGGGTGCAAAGAGCATCTA
GAAGATCTCTGAAACCTGAACAGAAGATTGACAGACGTCAAAGGAATAGC
AGATCATTACTGAGTAGAAACCTTTGAACGTACGTCGGCGGCATGCACAT
GTTCCGCGCCCAGTTGTTGTCGTTGACTGTTTTGGCGTCTTTCTTAGGAG
TGCGACGAGAAAGGACCCTGGCTCTTGCGGTTGAAGGTGGCGGGGAAGTA
GGAACAGGGGGTGGCAGTGTCGGGGGTCTGGGGGAACATGGGCTTGAGTG
GGGGTTGCCTCAGAAAGAGCAAGACGGCGGATGTTTCTCTCTTGGTGTGA
CCGGTGGCAGTATCGATCAGCAATGCCGCAAAGACGTTTGTGCGCCGAAA
TATGGGTGCGACAGCTTTAACCTAACCACTTCGGTGGAAAGCGGATTTCT
GTTCGATACGGTGTCGGGAGTGCTGAGGGGGGAGGGCTTGGCCCTTGTGG
TTGCAGGTGGCAAGGAAGTAGGAACAGGGGGTGGCAGTGTCGGGGGTCTG
GGGGAACATGGGCTTGAATGGGGGTTGCCTCAGAAAGAGCAAGACGGCGG
ATGTTTCTCTCTTGGTGTGACCGGTGGCAGTATCGATCAGCAATGCCGCA
CAGACTTTTGCGCGCCGAAATATGCGTGCGACAGCTTCAACCTAACCACT
TCGGTGGAAAGCGGATTTCTGTTCAATACGGTGTCAGGGGTACCAGGGAA
GACGGGGCCGAGTTTTGTTTGATTTCGGGTGGATGAGGTTGGGGTTTTGT
TCGTTTTTCTCCATATCTAAGGTTCGTGCCTAGAGTTCAGCTGTATGTAG
TGTTTCGACAAAAGTTTTGTTGACTTAGAGGCAAACATTCCTAGCTATTG
GGCATCGAGTTCATTTGGCTTGGCATGACGGCCTTTACGATCGACTTTTT
ATGTATGTCTGCATTTATCTGCAATTGTCGGAGGGCAAACAAAA

Coding sequence (CDS) from alignment at Scaffold_561:389739..391382+

>EsuBft1103_2a-0001 ID=EsuBft1103_2a-0001|Name=EsuBft1103_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=630bp|location=Sequence derived from alignment at Scaffold_561:389739..391382+ (Ectocarpus subulatus male Bft15b)
ATGCACATGTTCCGCGCCCAGTTGTTGTCGTTGACTGTTTTGGCGTCTTT
CTTAGGAGTGCGACGAGAAAGGACCCTGGCTCTTGCGGTTGAAGGTGGCG
GGGAAGTAGGAACAGGGGGTGGCAGTGTCGGGGGTCTGGGGGAACATGGG
CTTGAGTGGGGGTTGCCTCAGAAAGAGCAAGACGGCGGATGTTTCTCTCT
TGGTGTGACCGGTGGCAGTATCGATCAGCAATGCCGCAAAGACGTTTGTG
CGCCGAAATATGGGTGCGACAGCTTTAACCTAACCACTTCGGTGGAAAGC
GGATTTCTGTTCGATACGGTGTCGGGAGTGCTGAGGGGGGAGGGCTTGGC
CCTTGTGGTTGCAGGTGGCAAGGAAGTAGGAACAGGGGGTGGCAGTGTCG
GGGGTCTGGGGGAACATGGGCTTGAATGGGGGTTGCCTCAGAAAGAGCAA
GACGGCGGATGTTTCTCTCTTGGTGTGACCGGTGGCAGTATCGATCAGCA
ATGCCGCACAGACTTTTGCGCGCCGAAATATGCGTGCGACAGCTTCAACC
TAACCACTTCGGTGGAAAGCGGATTTCTGTTCAATACGGTGTCAGGGGTA
CCAGGGAAGACGGGGCCGAGTTTTGTTTGA