Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1799_5 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SignalP-TM |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 52 |
| Hectar predicted targeting category | signal peptide |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1799_5a-0001 ID=EsuBft1799_5a-0001|Name=EsuBft1799_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=527bp|location=Sequence derived from alignment at Scaffold_550:113818..114344+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TTATCCGCGCCATCTCTGCCGCGTCTCTCTACAAAACCAGTGACGTCATC
ACACACACCCAACACCTGTATTCAGGAAAAAAACGGAGAAATAATTGACA
ACACAAGAGATGTTCGTCCGTGCGCCACGGTTCGATGCCGTCCGCATGCT
CTGGTTCCGCTGCTCCGGTGCCGCTTCTCCGGTGCCGCTGTGGCCAGTCC
TAGCACGACCAAACTCGACCCGCTCCGCTTCGTACACGCTCTCGTTGCTG
TCCATCCCAGTCGGTCCCTCGTTCTCTCCCTCGTTGTGCACTTAGGGTTC
TTGGTCTAAAAATTCTCGCGCCGAAGGATCAACCAGCCCAACCAGCTCGT
CACCACCTGTCCCCTCCTCGTTTGATGGCAAAACCAGGTTACTGAGACAG
TACAGCTCCCTCTAGCAAACCTAGGGCCGTGTACATAGTGCCCGTCCACC
TTTCTGATGACGTCTGCCTCCGCGCACAAAGATGAGATGGGCATTGCTGC
CTACACCGACGGCCTGGAGGCCCGCGC back to topprotein sequence of EsuBft1799_5a-0001 >EsuBft1799_5 ID=EsuBft1799_5|Name=EsuBft1799_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=61bp
MFVRAPRFDAVRMLWFRCSGAASPVPLWPVLARPNSTRSASYTLSLLSIP
VGPSFSPSLCT back to topmRNA from alignment at Scaffold_550:113818..114344+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1799_5a-0001 ID=EsuBft1799_5a-0001|Name=EsuBft1799_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=527bp|location=Sequence derived from alignment at Scaffold_550:113818..114344+ (Ectocarpus subulatus male Bft15b)
TTATCCGCGCCATCTCTGCCGCGTCTCTCTACAAAACCAGTGACGTCATC
ACACACACCCAACACCTGTATTCAGGAAAAAAACGGAGAAATAATTGACA
ACACAAGAGATGTTCGTCCGTGCGCCACGGTTCGATGCCGTCCGCATGCT
CTGGTTCCGCTGCTCCGGTGCCGCTTCTCCGGTGCCGCTGTGGCCAGTCC
TAGCACGACCAAACTCGACCCGCTCCGCTTCGTACACGCTCTCGTTGCTG
TCCATCCCAGTCGGTCCCTCGTTCTCTCCCTCGTTGTGCACTTAGGGTTC
TTGGTCTAAAAATTCTCGCGCCGAAGGATCAACCAGCCCAACCAGCTCGT
CACCACCTGTCCCCTCCTCGTTTGATGGCAAAACCAGGTTACTGAGACAG
TACAGCTCCCTCTAGCAAACCTAGGGCCGTGTACATAGTGCCCGTCCACC
TTTCTGATGACGTCTGCCTCCGCGCACAAAGATGAGATGGGCATTGCTGC
CTACACCGACGGCCTGGAGGCCCGCGC back to topCoding sequence (CDS) from alignment at Scaffold_550:113818..114344+ >EsuBft1799_5a-0001 ID=EsuBft1799_5a-0001|Name=EsuBft1799_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=186bp|location=Sequence derived from alignment at Scaffold_550:113818..114344+ (Ectocarpus subulatus male Bft15b)
ATGTTCGTCCGTGCGCCACGGTTCGATGCCGTCCGCATGCTCTGGTTCCG
CTGCTCCGGTGCCGCTTCTCCGGTGCCGCTGTGGCCAGTCCTAGCACGAC
CAAACTCGACCCGCTCCGCTTCGTACACGCTCTCGTTGCTGTCCATCCCA
GTCGGTCCCTCGTTCTCTCCCTCGTTGTGCACTTAG back to top
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