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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
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| Seed ortholog | 13735.ENSPSIP00000000205 |
| ProteomeId | EsuBft1053_4 |
| Protein domains | Coil |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 33208|Metazoa |
| Length | 123 |
| Evalue | 2.8e-13 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria,48HSD@7711|Chordata,49FJM@7742|Vertebrata |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Ribonuclease H protein |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1053_4a-0001 ID=EsuBft1053_4a-0001|Name=EsuBft1053_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1238bp|location=Sequence derived from alignment at Scaffold_550:64105..65385- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCTTGACCGAGTTCGGAGGGCAGGATGGGGGATGCTGTATGC
CGATGATGCCGGCGTCGTATCGAGGTCTGCAGAAGGACTGGCGAGAATGA
TGACCATCATCGTTAAGGTGTTCGGGGAGTTCGGGCTAACGGTGTCGGAG
AAGCAAACGGAGACGCTCCTAATGCGCGCGAAGGACAAGGCGACTACAAC
ATCACAGCCCGCTCCGCCTCCACCGCGGACCATCGAAGCCGCGGGACCGA
AAAACACCCAGACGACCGAGTTCCGGTACCTCGCTGGCCTCTTCAACGAA
CATGGCGACCTCACCCGGGAGATCAACTACAGGAGCAGAGGAGCGTGGGC
GTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACAGACCGAAAGCTCCAT
TCCGACTCAAGATCCACCTGCTCCAGACGGAGGCGATGGAGGCACTGCTG
TATGGCTGCATGACATGGTCACCACTCAGCGGCCACTATCAGACGCTGCG
GTCGATACACCACCGACTGCTCCTTCGAGTTACCGGGTACAAGCGCAAGA
AAGACACCTTCCGGCAGCTCTCTTTCGCCCAGACGCTGAAGCGGGTCGAA
TGCCAGAGCGTTGAAGTCACGCTCCGACAACGACGCCTACTGTTCGCGGG
AGCGTTGGCAAGGCAGCCGGACGGGCGACTCCCGAAACGACTGATGCTCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGAAGCGACGTAGGG
GGAGACAGGAACAGAACTGGCCAAAGTGTGTGCTCGACGACCTGAGGGCA
TTCGGGGCCGACCACGGATCTACGAAAGCCGATCCATGTTGTTTCGGAAT
CCCGGTACCGAAAGACACGGCACCGACGTTAAAGTGGACGGAAGCCGCGA
AGGGAGCTGAGAGGTTCATGACCTCCTGGCACGAGAAGGAAGAAGAGGCC
AGCCGACAACGGGCGCTCAAACGAAACCACAAGCCACCAACCAATGGGGC
GGGAGGGGGGCAGGAGACGGACGAGACGGGGAGGGAAGAAAGTAAACGAG
AAGAGACGGACCGAGTGGCACGATACGTGCCGGATTGA back to topprotein sequence of EsuBft1053_4a-0001 >EsuBft1053_4 ID=EsuBft1053_4|Name=EsuBft1053_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=382bp
MLYADDAGVVSRSAEGLARMMTIIVKVFGEFGLTVSEKQTETLLMRAKDK
ATTTSQPAPPPPRTIEAAGPKNTQTTEFRYLAGLFNEHGDLTREINYRSR
GAWACLRRYGRELFDRPKAPFRLKIHLLQTEAMEALLYGCMTWSPLSGHY
QTLRSIHHRLLLRVTGYKRKKDTFRQLSFAQTLKRVECQSVEVTLRQRRL
LFAGALARQPDGRLPKRLMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXEKRRRGRQEQNWPKCVLDDLRAFGADHGSTKADPC
CFGIPVPKDTAPTLKWTEAAKGAERFMTSWHEKEEEASRQRALKRNHKPP
TNGAGGGQETDETGREESKREETDRVARYVPD back to topmRNA from alignment at Scaffold_550:64105..65385- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1053_4a-0001 ID=EsuBft1053_4a-0001|Name=EsuBft1053_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1281bp|location=Sequence derived from alignment at Scaffold_550:64105..65385- (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCTTGACCGAGTTCGGAGGGCAGGATGGGGGATGCTGTATGC
CGATGATGCCGGCGTCGTATCGAGGTCTGCAGAAGGACTGGCGAGAATGA
TGACCATCATCGTTAAGGTGTTCGGGGAGTTCGGGCTAACGGTGTCGGAG
AAGCAAACGGAGACGCTCCTAATGCGCGCGAAGGACAAGGCGACTACAAC
ATCACAGCCCGCTCCGCCTCCACCGCGGACCATCGAAGCCGCGGGACCGA
AAAACACCCAGACGACCGAGTTCCGGTACCTCGCTGGCCTCTTCAACGAA
CATGGCGACCTCACCCGGGAGATCAACTACAGGAGCAGAGGAGCGTGGGC
GTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACAGACCGAAAGCTCCAT
TCCGACTCAAGATCCACCTGCTCCAGACGGAGGCGATGGAGGCACTGCTG
TATGGCTGCATGACATGGTCACCACTCAGCGGCCACTATCAGACGCTGCG
GTCGATACACCACCGACTGCTCCTTCGAGTTACCGGGTACAAGCGCAAGA
AAGACACCTTCCGGCAGCTCTCTTTCGCCCAGACGCTGAAGCGGGTCGAA
TGCCAGAGCGTTGAAGTCACGCTCCGACAACGACGCCTACTGTTCGCGGG
AGCGTTGGCAAGGCAGCCGGACGGGCGACTCCCGAAACGACTGATGCTCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGAAGCGACGTAGGG
GGAGACAGGAACAGAACTGGCCAAAGTGTGTGCTCGACGACCTGAGGGCA
TTCGGGGCCGACCACGGATCTACGAAAGCCGATCCATGTTGTTTCGGAAT
CCCGGTACCGAAAGACACGGCACCGACGTTAAAGTGGACGGAAGCCGCGA
AGGTGAATGGGGGAGTACCCTGGCATGCTTGCAGCGGTGCTGCAGGGAGC
TGAGAGGTTCATGACCTCCTGGCACGAGAAGGAAGAAGAGGCCAGCCGAC
AACGGGCGCTCAAACGAAACCACAAGCCACCAACCAATGGGGCGGGAGGG
GGGCAGGAGACGGACGAGACGGGGAGGGAAGAAAGTAAACGAGAAGAGAC
GGACCGAGTGGCACGATACGTGCCGGATTGA back to topCoding sequence (CDS) from alignment at Scaffold_550:64105..65385- >EsuBft1053_4a-0001 ID=EsuBft1053_4a-0001|Name=EsuBft1053_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1149bp|location=Sequence derived from alignment at Scaffold_550:64105..65385- (Ectocarpus subulatus male Bft15b)
ATGCTGTATGCCGATGATGCCGGCGTCGTATCGAGGTCTGCAGAAGGACT
GGCGAGAATGATGACCATCATCGTTAAGGTGTTCGGGGAGTTCGGGCTAA
CGGTGTCGGAGAAGCAAACGGAGACGCTCCTAATGCGCGCGAAGGACAAG
GCGACTACAACATCACAGCCCGCTCCGCCTCCACCGCGGACCATCGAAGC
CGCGGGACCGAAAAACACCCAGACGACCGAGTTCCGGTACCTCGCTGGCC
TCTTCAACGAACATGGCGACCTCACCCGGGAGATCAACTACAGGAGCAGA
GGAGCGTGGGCGTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACAGACC
GAAAGCTCCATTCCGACTCAAGATCCACCTGCTCCAGACGGAGGCGATGG
AGGCACTGCTGTATGGCTGCATGACATGGTCACCACTCAGCGGCCACTAT
CAGACGCTGCGGTCGATACACCACCGACTGCTCCTTCGAGTTACCGGGTA
CAAGCGCAAGAAAGACACCTTCCGGCAGCTCTCTTTCGCCCAGACGCTGA
AGCGGGTCGAATGCCAGAGCGTTGAAGTCACGCTCCGACAACGACGCCTA
CTGTTCGCGGGAGCGTTGGCAAGGCAGCCGGACGGGCGACTCCCGAAACG
ACTGATGCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGAA
GCGACGTAGGGGGAGACAGGAACAGAACTGGCCAAAGTGTGTGCTCGACG
ACCTGAGGGCATTCGGGGCCGACCACGGATCTACGAAAGCCGATCCATGT
TGTTTCGGAATCCCGGTACCGAAAGACACGGCACCGACGTTAAAGTGGAC
GGAAGCCGCGAAGGGAGCTGAGAGGTTCATGACCTCCTGGCACGAGAAGG
AAGAAGAGGCCAGCCGACAACGGGCGCTCAAACGAAACCACAAGCCACCA
ACCAATGGGGCGGGAGGGGGGCAGGAGACGGACGAGACGGGGAGGGAAGA
AAGTAAACGAGAAGAGACGGACCGAGTGGCACGATACGTGCCGGATTGA back to top
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