Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 6500.XP_005092035.1 |
| ProteomeId | EsuBft1053_8 |
| Protein domains | PTHR19446 |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | transposon tx1 uncharacterized 149 kda protein os:xenopus laevis pe:3 sv:1 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 33208|Metazoa |
| Length | 744 |
| Evalue | 1.12e-40 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Ribonuclease H protein |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1053_8a-0001 ID=EsuBft1053_8a-0001|Name=EsuBft1053_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=744bp|location=Sequence derived from alignment at Scaffold_550:36345..37139+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCGAGGATTACTAGTACTACATCAACACCTCAAGAGATCAGTGGGCCT
CAGCGGGAGACATGCGGGGGGACAACAGTTCGTCGCGGATGAGAACGGCG
TGTTGCTCAGGAACAGGGACGACATCCTCCAGCGGTGGGCGAGATTCTTC
AGCACCCTACTCAACACCAAATCCCCCACCCTGAACCCAGACATCATCGA
ACGAGTGACGCAGCGGCGAGCGACACGTGACACTCAACGGTTGGGAGATG
TGCCAGAACTCGAGGAGGTGGCACGGGCAACGAAAGGCCTCAAGAACTGG
AAGGCACCCGGCCATGACTCCCTCCCTGCCGAGTTGCTCAAGATCGATGA
CGACGAACCCTTCGTCCTGGGACACCTCCATACCATCCTCGTCAAGGTAC
TGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGTTTTCG
CTACTATCTCAAGCAGGCAAGGTCCCCGTCAAGATCATCGCCAACCATCT
AAGCGCATTCTGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCAGAT
TTCGACCCGGGCGATCCACCGTCGACATGCTGTTCATCGTGCGCCGGGTC
CAGGAGCTGGGGCGGAGAAAGACAATACCGCTCTACATGTGCTTCGTCGA
CTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGTGC
TGGCCAGGGCCGGGATTCCCGCGGAGCTGATCGAAGTCATCTNA back to topprotein sequence of EsuBft1053_8a-0001 >EsuBft1053_8 ID=EsuBft1053_8|Name=EsuBft1053_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=248bp
MRGLLVLHQHLKRSVGLSGRHAGGQQFVADENGVLLRNRDDILQRWARFF
STLLNTKSPTLNPDIIERVTQRRATRDTQRLGDVPELEEVARATKGLKNW
KAPGHDSLPAELLKIDDDEPFVLGHLHTILVKVLYKKGDRSNCNNYRGFS
LLSQAGKVPVKIIANHLSAFCEANNILPEEQCRFRPGRSTVDMLFIVRRV
QELGRRKTIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAELIEVIX back to topmRNA from alignment at Scaffold_550:36345..37139+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1053_8a-0001 ID=EsuBft1053_8a-0001|Name=EsuBft1053_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=795bp|location=Sequence derived from alignment at Scaffold_550:36345..37139+ (Ectocarpus subulatus male Bft15b)
ATGCGAGGATTACTAGTACTACATCAACACCTCAAGAGATCAGTGGGCCT
CAGCGGGAGACATGCGGGGGGACAACAGTTCGTCGCGGATGAGAACGGCG
TGTTGCTCAGGAACAGGGACGACATCCTCCAGCGGTGGGCGAGATTCTTC
AGCACCCTACTCAACACCAAATCCCCCACCCTGAACCCAGACATCATCGA
ACGAGTGACGCAGCGGCGAGCGACACGTGACACTCAACGGTTGGGAGATG
TGCCAGAACTCGAGGAGGTGGCACGGGCAACGAAAGGCCTCAAGAACTGG
AAGGCACCCGGCCATGACTCCCTCCCTGCCGAGTTGCTCAAGATCGATGA
CGACGAACCCTTCGTCCTGGGACACCTCCATACCATCCTCGTCAAGGTGT
GGAACGGAGGAGACATCTCGCGAGAGTAAAAGGATGCAACCATCCAGGTA
CTGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGTTTTC
GCTACTATCTCAAGCAGGCAAGGTCCCCGTCAAGATCATCGCCAACCATC
TAAGCGCATTCTGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCAGA
TTTCGACCCGGGCGATCCACCGTCGACATGCTGTTCATCGTGCGCCGGGT
CCAGGAGCTGGGGCGGAGAAAGACAATACCGCTCTACATGTGCTTCGTCG
ACTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGTG
CTGGCCAGGGCCGGGATTCCCGCGGAGCTGATCGAAGTCATCTNA back to topCoding sequence (CDS) from alignment at Scaffold_550:36345..37139+ >EsuBft1053_8a-0001 ID=EsuBft1053_8a-0001|Name=EsuBft1053_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=744bp|location=Sequence derived from alignment at Scaffold_550:36345..37139+ (Ectocarpus subulatus male Bft15b)
ATGCGAGGATTACTAGTACTACATCAACACCTCAAGAGATCAGTGGGCCT
CAGCGGGAGACATGCGGGGGGACAACAGTTCGTCGCGGATGAGAACGGCG
TGTTGCTCAGGAACAGGGACGACATCCTCCAGCGGTGGGCGAGATTCTTC
AGCACCCTACTCAACACCAAATCCCCCACCCTGAACCCAGACATCATCGA
ACGAGTGACGCAGCGGCGAGCGACACGTGACACTCAACGGTTGGGAGATG
TGCCAGAACTCGAGGAGGTGGCACGGGCAACGAAAGGCCTCAAGAACTGG
AAGGCACCCGGCCATGACTCCCTCCCTGCCGAGTTGCTCAAGATCGATGA
CGACGAACCCTTCGTCCTGGGACACCTCCATACCATCCTCGTCAAGGTAC
TGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGTTTTCG
CTACTATCTCAAGCAGGCAAGGTCCCCGTCAAGATCATCGCCAACCATCT
AAGCGCATTCTGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCAGAT
TTCGACCCGGGCGATCCACCGTCGACATGCTGTTCATCGTGCGCCGGGTC
CAGGAGCTGGGGCGGAGAAAGACAATACCGCTCTACATGTGCTTCGTCGA
CTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGTGC
TGGCCAGGGCCGGGATTCCCGCGGAGCTGATCGAAGTCATCTNA back to top
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