EsuBft1833_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1833_5a-0001
Unique NameEsuBft1833_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_550contigScaffold_550:2147..6932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
StatusManually annotated
Seed ortholog2880.D7FR88
ProteomeIdEsuBft1833_5
Protein domainsIPR005200
Protein domainsPTHR31983
Ownerapollo_admin@sb-roscoff.fr
Noteendo- -beta-glucanase 1 os:saccharomyces cerevisiae (strain atcc 204508 s288c) gn:dse4 pe:1 sv:1 [Automatic annotation]
Nb exon8
Max annot lvl2759|Eukaryota
Length1818
Hectar predicted targeting categoryother localisation
Evalue2.88e-263
EggNOG OGsCOG5498@1|root,KOG2254@2759|Eukaryota
Date last modified2016-09-13
Date creation2016-06-13
KEGG koko:K01180
EC3.2.1.6
DescriptionEndo-1,3-beta-glucanase, N-terminal fragment, family GH81
Descriptionglucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group
COG categoryM
BRITEko00000,ko01000
NoteEndo-1,3-beta-glucanase, also known as laminarinase, catalyzes the hydrolysis of 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans (including laminarin from brown algae). Belongs to the family GH81 of the glycoside hydrolases.
NoteGap from 151 to 201
NoteSimeon A., annotator
Cross References
External references for this mRNA
DatabaseAccession
GO0016998
EC3.2.1.39
GO0052862
GO0052861
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1833_5aEsuBft1833_5aEctocarpus subulatus male Bft15bgeneScaffold_550 2147..6932 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1833_5a-0001EsuBft1833_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_550 2615..6932 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1833_5a-0001-exonagat-exon-3947Ectocarpus subulatus male Bft15bexonScaffold_550 2147..2765 -
EsuBft1833_5a-0001-exonagat-exon-3952Ectocarpus subulatus male Bft15bexonScaffold_550 3256..3422 -
EsuBft1833_5a-0001-exonagat-exon-3949Ectocarpus subulatus male Bft15bexonScaffold_550 3630..3824 -
EsuBft1833_5a-0001-exonEsuBft1833_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_550 4255..4344 -
EsuBft1833_5a-0001-exonagat-exon-3946Ectocarpus subulatus male Bft15bexonScaffold_550 5026..5337 -
EsuBft1833_5a-0001-exonagat-exon-3948Ectocarpus subulatus male Bft15bexonScaffold_550 5599..5741 -
EsuBft1833_5a-0001-exonagat-exon-3951Ectocarpus subulatus male Bft15bexonScaffold_550 6393..6585 -
EsuBft1833_5a-0001-exonagat-exon-3950Ectocarpus subulatus male Bft15bexonScaffold_550 6834..6932 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1833_5a-0001-exonagat-three_prime_utr-6594Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_550 2147..2614 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1833_5a-0001-cdsEsuBft1833_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_550 2615..2765 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1833_5a-0001 ID=EsuBft1833_5a-0001|Name=EsuBft1833_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1818bp|location=Sequence derived from alignment at Scaffold_550:2147..6932- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGCCAAGATGGGGCGAATCGCGCTCATCGCCGAGGAAATGGGGCG
CCCGGAAGACGCCAGAATGGTGGCGGCTCGCCTGGCCGAAGCATCTCAGG
TTTGGCTGAACGGTACGGCGGGGTCCCCATTGCTCTACGACTTCCGGTGG
GGCGGCGTGGTCACTTGCGGCTGCGCGTATGAAAAGGACCACGGTTGCAT
GAATGGTATCGGCCCATATCAGTGCCCAGGCCTTAGCGACCCCGGGATGA
ACTTCGGCCTTGGCTTTTACAACGATCATCACTTCCATTTCGGTTACCAC
ATCTTTGCGGCGGCGATCGTCTCCAAGTTTTTCCCGGATTGGGGAATCAA
GCACCACGAGGCCGTGACGCTGCTCATCAGAGACATAGCAAACCCGTCCA
GCTCGGACCCTTTCTTCCCGGTGTTCCGACACAAGGAGGCACTGTCGTTC
ATTGCCCTGCTTTCTGAGTTTGTTGCTAGAGTCGCCAGGTACAACTCGCT
AAACCAACCTCTGGTTTTGAGACAGCATTGGTCATGTACAACCCCGCAAC
GTATTTTAAGAGAACCTTGCCATGAATACCAAGCACTTCCGCGGCGGTGC
CAGGATTGGTTCTTGGGGTCATCGTGGGCCCTTGGCATCCCCACCCTGGG
GGGGGTCCCGTACATGAACGGTCGCAACCAGGAAAGCAGCAGCGAGGCCG
TCAATGCGTACTACGCCGTCGCCCTCTATGGCCACGTCATGGCACAGGTG
TTCTCCTCAGCGGGCGATCCGGCAAAGGCGCAGGCGGCCTCCCTCATTCG
GGACACTGGGAGGCAGCTTCTCGCCACGGAAGTACAGTCCGCCCAGATTT
ACTGGCAAGTCGCCAACGCAGGCACCCCCAACTTGCCTAGAGTGTATCCG
GAGGCCTACCGGCCGCACGTCGTCGGGATGCTTTGGAGCACGCTGGCGCA
GATGCAGACCTGGTTTGGTGCGGAGGCCTGGAAAGTTTACGGGATCCAGG
CAAGCTGCCTATCCGTCTCTTTGTATCTGCATATGCTACCAATCACCGGA
GTTAGCGAGCAGCTGCTGGACCCGCGATGGGTGCAGCAGATGCTGCCGTC
GTTCGAGGATTCTTGTCTGCACGACAGCAACCCCATAAAGGCCTGTGTCG
TGGAGGGGTGGTCGATGCTCGTGCACGCAGGACAAGCGATCACCGGCAGG
TGGGAAGATGGTAGAGATGGGATAATGGCCCTCCCAGACGACGTGTTCGA
GACGGCGGGCGGAAATGGTCACAGTCGAACGAGCATGCTGTGGTTTGTGG
CCAATCGCCCTCCCCCTCCGCCACCCTCGGGTGATGACGACAGTGATTAA
CGTTTGCGATGTCAGGGATTCCTCACCTTCCCCGACAACAAGCGTTTCTC
CTCATCGGAGTAGAAGCCTGACTGGGTTTACTGTTGTCAATTTTGTTTTG
CGCCCGGATTTTTGACTGCGTAGAGTCGATGAAACGTGGCATGCGGTCAG
CTTGTGGATTTTTTGTTTTGGACGTATGATTGTACGTGAATTGAAGGTTG
CAGCGAGGCGTGTTGCAACGGTTTGTGTGTAGAGCAGATGCTTGATGAAG
GTTTCGGCTACAAATCTACAGCTACACACCGCGATTGCGGGCGTTTATGG
CGCTTGGTTGTTGGACTTGGTGTTGAATTTCAGTGATTGACAGGAACGGG
GATAACAGATGACCGAGTTTGGTGCAATAGTGCATGACTCGGGTTCGAGA
GGGCTCACAGACAGGCAGATAGGCTGCCAGGCAAGATATTGAGATATGAC
ATAGAGATATACGAAAGA
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protein sequence of EsuBft1833_5a-0001

>EsuBft1833_5 ID=EsuBft1833_5|Name=EsuBft1833_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=449bp
MLAKMGRIALIAEEMGRPEDARMVAARLAEASQVWLNGTAGSPLLYDFRW
GGVVTCGCAYEKDHGCMNGIGPYQCPGLSDPGMNFGLGFYNDHHFHFGYH
IFAAAIVSKFFPDWGIKHHEAVTLLIRDIANPSSSDPFFPVFRHKEALSF
IALLSEFVARVARYNSLNQPLVLRQHWSCTTPQRILREPCHEYQALPRRC
QDWFLGSSWALGIPTLGGVPYMNGRNQESSSEAVNAYYAVALYGHVMAQV
FSSAGDPAKAQAASLIRDTGRQLLATEVQSAQIYWQVANAGTPNLPRVYP
EAYRPHVVGMLWSTLAQMQTWFGAEAWKVYGIQASCLSVSLYLHMLPITG
VSEQLLDPRWVQQMLPSFEDSCLHDSNPIKACVVEGWSMLVHAGQAITGR
WEDGRDGIMALPDDVFETAGGNGHSRTSMLWFVANRPPPPPPSGDDDSD
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mRNA from alignment at Scaffold_550:2147..6932-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1833_5a-0001 ID=EsuBft1833_5a-0001|Name=EsuBft1833_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4786bp|location=Sequence derived from alignment at Scaffold_550:2147..6932- (Ectocarpus subulatus male Bft15b)
ATGTTGGCCAAGATGGGGCGAATCGCGCTCATCGCCGAGGAAATGGGGCG
CCCGGAAGACGCCAGAATGGTGGCGGCTCGCCTGGCCGAAGCATCTCAGG
TACAGAGTGTGGGAAGGCACAGCAGTACCCCAGTTTTGCTTCTTTGGGTC
CGACCCTTTTCCGGAGAGTTTTGGTACGATTTATTTCGTGTGACACAACA
TTGATAACACCGTCGACATATTTTCCACGCACTAAACGACCCCCCTTGGC
ACGACAACCACTTCTTGCTTGGCTTTGTTGCTGTAACGCTTGTTATTGCG
AAGACAACAACAATGCCTACCTGGTAAAACAATGCCCTGAACGACAGGTT
TGGCTGAACGGTACGGCGGGGTCCCCATTGCTCTACGACTTCCGGTGGGG
CGGCGTGGTCACTTGCGGCTGCGCGTATGAAAAGGACCACGGTTGCATGA
ATGGTATCGGCCCATATCAGTGCCCAGGCCTTAGCGACCCCGGGATGAAC
TTCGGCCTTGGCTTTTACAACGATCATCACTTCCATTTCGGTGAGTGGGA
CGGGCGGCGCACACAGCAGCAAACAATACCCTCTGAGACATATGCACGTG
TTGAGAAGGTGACGCTTACCTTTTGCGTATTCCTACTGGACGCCCGCCGT
ATCGACGCTGAGACACCTCCAGGCGACAATTTTATTTTATTTTATTGGGA
ACAGCTCGAGATAGGTGAGGAGTTGTGCGACGAACTCCAAAGTTGTATCC
CTGGCGCGACCACCTTGCCTGAATCCCGCTAGTCGCCTTACTCTCGTGTG
TTGCATGAAGTGACGCCTGCAGTTGAGGTGGCTCGTTCGCCTGTTTGGTA
GTGCGCTTTAACAGAACTCACCCGGCAATTGCGCAACTCTTGAGTCTGAA
AGGTCAATGTCAGAATCACCACTCTGCGCATTTTCTCGTGCCTGCTTGCA
TGAGTTGTCATTGTCCTTCTTTTCCAAGCAGTATACCGTCGCGAGGGGCA
GCTAGACGTAATAAGTAGTATTCCCCGACCAGTTTGCGTCGTCGCCCCGT
CCTTGCGAGACAGACCAACGTCGTGTTTTAACCGCGGCTGCTATTTCTGT
TCTACGCATAAATGCGGCGTATTCTCGTCCGAAGAGGCTCACGGCTCGTT
CGTTTTATTTTTTCCCGCTCTACCTCTCTCTAAAACAACAGGTTACCACA
TCTTTGCGGCGGCGATCGTCTCCAAGTTTTTCCCGGATTGGGGAATCAAG
CACCACGAGGCCGTGACGCTGCTCATCAGAGACATAGCAAACCCGTCCAG
CTCGGACCCTTTCTTCCCGGTGTTCCGACACAAGGTATACAGGGCAATGT
CTGCACACCTACCGCATGTTCGATCCACGAGCGGCAAAAATGACCGCAAC
TCTACTTTCAAGTGTTTGGGACGTGTCAGCGGCATCCAAATGAAATATGG
CACCACTGCTGCTGCCCTTGTGCTCCAAGCATCCCAGGCAACCTTTTTGT
ACCTGCCCGTGATGGGCGTTGGCGAATCCAGTACAGTTAAAATTGAGCCC
ACCATCGTTCTGAGGTATTCTTCTGCCAGACCATGTACCGTGTAGGAGGC
ACTGTCGTTCATTGCCCTGCTTTCTGAGTTTGTTGCTAGAGTCGCCAGGT
ACAACTCGCTAAACCAACCTCTGGTTTTGAGACAGCATTGGTCATGTACA
ACCCCGCAACGTATTTTAAGAGAACCTTGCCATGAATACCAAGCACTTCC
GCGGCGGTGCCAGGATTGGTTCTTGGGGTCATCGTGGGCCCTTGGCATCC
CCACCCTGGGGGGGGTCCCGTACATGAACGGTCGCAACCAGGAAAGCAGC
AGCGAGGCCGTCAATGCGTACTACGCCGTCGCCCTCTATGGCCACGTCAT
GGCACAGGTAGATAACCGATCTCCGTCTCCACGTCTCTCGCTGCTACCAT
TGTTGTTGTTGTTGTCGTCGTTGGTGGAACTGGTTTCGTTGTTGGTGCTG
TAGGTGTCCGTTATGAAACGTTGGGACTCTGCGACCCTATCGCTACTCGT
GCGACCCAACCGGTTCGACATGGCCTCCGCCAAACGGTTGAAATTGCGTG
GTGCGGGAGAAGTACACGATGGTAGTATTAAGCGTTCTGGAACCGACATG
TGTTACGCGACGTCGCAGTGTCGAACAGTATCACCACCGCCTGGTTAACA
CTGTGAACCCAACAACACTTTGTGGTGCATGGTTTCTCCCTATATTAGGC
GGTATTTTCGAAGTACAAAGGCTGGTCACCCTGCGCAAGACCGGTGAAGG
CGCGTGACACAGATGGAATATCCAATTCGTCTCGTACTCTGAATATTATG
GGGTGCCCGGTATGAGGCCAGCTACATCCAATCCCTCGGAACGAGTTGGC
CTTATAAATGACCACTACTCTACGTGCCTCCCTCTAGAACAATATGCGGC
CTGTTGTTCTGTCCGTGCTGGGTTCTCCAACCTCATGCGGAAGCAGCCCT
GTTGTCTTCCGTATCCAAGATTTTCTCTTTGTCGTTACGACCTTCGTTTT
TCTGCATGTGATTCTTGCCGGTGACCGTCTTGTCCTAGGTGTTCTCCTCA
GCGGGCGATCCGGCAAAGGCGCAGGCGGCCTCCCTCATTCGGGACACTGG
GAGGCAGCTTCTCGCCACGGAAGTACAGGTGAGAGAAGAAGGATGACGAG
GAGGCATCGGAATGGCGACGGTTCATGATCGGGGGATCTTTATTGATGGT
TGTTCACCGAAATGCAACAAGAACTCGGGTACACAAAATGGGAGCGAATG
ATGAAGAGGCGGCGGCGCGGTCAGAGGGTGCTACAAGCAGGAGAGACCCG
GACGATGAGAGAGATAAGTAGAAAATGAATGCTTCGACTGAGATATCCAT
CAACTCGGGGGCGACTTCGCAAGCAAGTGTAGTACATCTCCAAATTCGTT
TGACATGCATACGGATGGACACTGTGGTAGAGGGTCGTCTTGCGGGAGTG
CAGCGGCGGCGTAACCCCTCTCCGCGATCCTCCCACCACAGCTCTTTTTC
CCGGTTGCCCTACCCCATGATTGCTGGGCATTTTGTGTCTGCACGGTGGA
TCACGCAGTCCGCCCAGATTTACTGGCAAGTCGCCAACGCAGGCACCCCC
AACTTGCCTAGAGTGTATCCGGAGGCCTACCGGCCGCACGTCGTCGGGAT
GCTTTGGAGCACGCTGGCGCAGATGCAGACCTGGTTTGGTGCGGAGGCCT
GGAAAGTTTACGGGATCCAGGCAAGCTGCCTATCCGTCTCTTTGTATCTG
CATGTTCAGTTCCATTCACTTCACCAACAGCGACACAGGTTGCCTCCAAG
AAAGTGACCCGGTTGTCTCCGTTGCCGCGAGCCTCCCCTTTTGTCGGCGG
CGTTTTGGATGCCTCCCTAGCATCGGCTGTCGCGTTTTAGTTGTGGGTGC
TAGACACCCTTTGATCGTGGCATGCCCTTCTTCCTCGCCCTTGCACCTGT
TGCGCAACAGATGCTACCAATCACCGGAGTTAGCGAGCAGCTGCTGGACC
CGCGATGGGTGCAGCAGATGCTGCCGTCGTTCGAGGATTCTTGTCTGCAC
GACAGCAACCCCATAAAGGCCTGTGTCGTGGAGGGGTGGTCGATGCTCGT
GCACGCAGGACAAGCGATCACCGGCAGGTGCGGCGATATGTCTGTTGCTG
CTGATGTTACCGTTGCCGCTATTTTGCAAGTGGTGTGTGCTGGCAGCGTG
TTCGAAGAGCTAGACAGGCATGCAAGGCTGTGAGGTTTTGTCGTCTTCGC
TCCCTTGCATGGAGCGCAGTTGGCATGCGCCGTGTCGTGTCTAGCGATTG
CGTAGTTTCCATGGTCCTCGCCACGCTGGCCCAGTACCTCTCTTCTATTT
CTTTGTTGCGTGCCGCCAAAGGGTCAACATGCGTGACACCCCAAGGCGGT
TACTTGGCTCTATTACGGTGGGGTGTCATGCGTTCATGAACGCTGGCATG
GCACTGATGACAGTTAACTGGAACATGGTTCGCCCAACAGTAACGCAGTG
AAGGGTTCTCCCAATTCCGAGAGAGAATATTTCTATTATATCCATAATCT
GATTTATACATCAAATCACCCTTCACGACCCCCCTTCGTCCTCGAATTCG
AAACTCGTGCTTCCAAGGTGGGAAGATGGTAGAGATGGGATAATGGCCCT
CCCAGACGACGTGTTCGAGACGGCGGGCGGAAATGGTCACAGTCGAACGA
GCATGCTGTGGTTTGTGGCCAATCGCCCTCCCCCTCCGCCACCCTCGGGT
GATGACGACAGTGATTAACGTTTGCGATGTCAGGGATTCCTCACCTTCCC
CGACAACAAGCGTTTCTCCTCATCGGAGTAGAAGCCTGACTGGGTTTACT
GTTGTCAATTTTGTTTTGCGCCCGGATTTTTGACTGCGTAGAGTCGATGA
AACGTGGCATGCGGTCAGCTTGTGGATTTTTTGTTTTGGACGTATGATTG
TACGTGAATTGAAGGTTGCAGCGAGGCGTGTTGCAACGGTTTGTGTGTAG
AGCAGATGCTTGATGAAGGTTTCGGCTACAAATCTACAGCTACACACCGC
GATTGCGGGCGTTTATGGCGCTTGGTTGTTGGACTTGGTGTTGAATTTCA
GTGATTGACAGGAACGGGGATAACAGATGACCGAGTTTGGTGCAATAGTG
CATGACTCGGGTTCGAGAGGGCTCACAGACAGGCAGATAGGCTGCCAGGC
AAGATATTGAGATATGACATAGAGATATACGAAAGA
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Coding sequence (CDS) from alignment at Scaffold_550:2147..6932-

>EsuBft1833_5a-0001 ID=EsuBft1833_5a-0001|Name=EsuBft1833_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1350bp|location=Sequence derived from alignment at Scaffold_550:2147..6932- (Ectocarpus subulatus male Bft15b)
ATGTTGGCCAAGATGGGGCGAATCGCGCTCATCGCCGAGGAAATGGGGCG
CCCGGAAGACGCCAGAATGGTGGCGGCTCGCCTGGCCGAAGCATCTCAGG
TTTGGCTGAACGGTACGGCGGGGTCCCCATTGCTCTACGACTTCCGGTGG
GGCGGCGTGGTCACTTGCGGCTGCGCGTATGAAAAGGACCACGGTTGCAT
GAATGGTATCGGCCCATATCAGTGCCCAGGCCTTAGCGACCCCGGGATGA
ACTTCGGCCTTGGCTTTTACAACGATCATCACTTCCATTTCGGTTACCAC
ATCTTTGCGGCGGCGATCGTCTCCAAGTTTTTCCCGGATTGGGGAATCAA
GCACCACGAGGCCGTGACGCTGCTCATCAGAGACATAGCAAACCCGTCCA
GCTCGGACCCTTTCTTCCCGGTGTTCCGACACAAGGAGGCACTGTCGTTC
ATTGCCCTGCTTTCTGAGTTTGTTGCTAGAGTCGCCAGGTACAACTCGCT
AAACCAACCTCTGGTTTTGAGACAGCATTGGTCATGTACAACCCCGCAAC
GTATTTTAAGAGAACCTTGCCATGAATACCAAGCACTTCCGCGGCGGTGC
CAGGATTGGTTCTTGGGGTCATCGTGGGCCCTTGGCATCCCCACCCTGGG
GGGGGTCCCGTACATGAACGGTCGCAACCAGGAAAGCAGCAGCGAGGCCG
TCAATGCGTACTACGCCGTCGCCCTCTATGGCCACGTCATGGCACAGGTG
TTCTCCTCAGCGGGCGATCCGGCAAAGGCGCAGGCGGCCTCCCTCATTCG
GGACACTGGGAGGCAGCTTCTCGCCACGGAAGTACAGTCCGCCCAGATTT
ACTGGCAAGTCGCCAACGCAGGCACCCCCAACTTGCCTAGAGTGTATCCG
GAGGCCTACCGGCCGCACGTCGTCGGGATGCTTTGGAGCACGCTGGCGCA
GATGCAGACCTGGTTTGGTGCGGAGGCCTGGAAAGTTTACGGGATCCAGG
CAAGCTGCCTATCCGTCTCTTTGTATCTGCATATGCTACCAATCACCGGA
GTTAGCGAGCAGCTGCTGGACCCGCGATGGGTGCAGCAGATGCTGCCGTC
GTTCGAGGATTCTTGTCTGCACGACAGCAACCCCATAAAGGCCTGTGTCG
TGGAGGGGTGGTCGATGCTCGTGCACGCAGGACAAGCGATCACCGGCAGG
TGGGAAGATGGTAGAGATGGGATAATGGCCCTCCCAGACGACGTGTTCGA
GACGGCGGGCGGAAATGGTCACAGTCGAACGAGCATGCTGTGGTTTGTGG
CCAATCGCCCTCCCCCTCCGCCACCCTCGGGTGATGACGACAGTGATTAA
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