EsuBft1833_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1833_6a-0001
Unique NameEsuBft1833_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_550contigScaffold_550:987..1504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1833_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length51
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1833_6aEsuBft1833_6aEctocarpus subulatus male Bft15bgeneScaffold_550 987..1504 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1833_6a-0001-exonEsuBft1833_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_550 987..1504 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1833_6a-0001-exonagat-three_prime_utr-6595Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_550 987..1297 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1833_6a-0001-cdsEsuBft1833_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_550 1298..1477 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1833_6a-0001-exonagat-five_prime_utr-4339Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_550 1478..1504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1833_6a-0001EsuBft1833_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_550 1298..1477 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1833_6a-0001 ID=EsuBft1833_6a-0001|Name=EsuBft1833_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=518bp|location=Sequence derived from alignment at Scaffold_550:987..1504- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAGAGCACAAGACACGCAGATAGATTGATGGATATCACAGAGAGATGGCG
AATGATGTGCCGCCGTTGTGATATTGGCGTACGCGGTGGCACATTGCTAG
TGCCGCATATTCCACATCGGGGACAAAACAACCCTACCCTGTCGGCTGTT
GGTGACAACCAACATGTTGCTCGCGTTGGACAGGGTGTGGACTTACAGAC
CATATGAAGTACCCTGTAGTCTAAGCCAAGAAATTATTGGTGGCCTGCTG
GATAGTGAGGAGGTGAACGGCGGAGAGGAAAAGGATACAAAAGACAAGGC
ACCCTGGTTCGTACTGCGGCGGTTTGGTGTCGCGTATAACGCAGATAGTA
TGTGACTTCTCGTTGTTGGACAAGGGGGTTGCCTGGTCATGTGCGCGCTT
TGCGATCACGTGCCCATCATTGTGCAGAGTTTGATAGATTATTTGAGCGG
GAAAATGAGTTTGTTGCAGGGGGGGGAATACGGTAAAGACAAGTGATTGG
ACAGTGTTTAATCTCAAA
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protein sequence of EsuBft1833_6a-0001

>EsuBft1833_6 ID=EsuBft1833_6|Name=EsuBft1833_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=59bp
MDITERWRMMCRRCDIGVRGGTLLVPHIPHRGQNNPTLSAVGDNQHVARV
GQGVDLQTI
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mRNA from alignment at Scaffold_550:987..1504-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1833_6a-0001 ID=EsuBft1833_6a-0001|Name=EsuBft1833_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=518bp|location=Sequence derived from alignment at Scaffold_550:987..1504- (Ectocarpus subulatus male Bft15b)
GAGAGCACAAGACACGCAGATAGATTGATGGATATCACAGAGAGATGGCG
AATGATGTGCCGCCGTTGTGATATTGGCGTACGCGGTGGCACATTGCTAG
TGCCGCATATTCCACATCGGGGACAAAACAACCCTACCCTGTCGGCTGTT
GGTGACAACCAACATGTTGCTCGCGTTGGACAGGGTGTGGACTTACAGAC
CATATGAAGTACCCTGTAGTCTAAGCCAAGAAATTATTGGTGGCCTGCTG
GATAGTGAGGAGGTGAACGGCGGAGAGGAAAAGGATACAAAAGACAAGGC
ACCCTGGTTCGTACTGCGGCGGTTTGGTGTCGCGTATAACGCAGATAGTA
TGTGACTTCTCGTTGTTGGACAAGGGGGTTGCCTGGTCATGTGCGCGCTT
TGCGATCACGTGCCCATCATTGTGCAGAGTTTGATAGATTATTTGAGCGG
GAAAATGAGTTTGTTGCAGGGGGGGGAATACGGTAAAGACAAGTGATTGG
ACAGTGTTTAATCTCAAA
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Coding sequence (CDS) from alignment at Scaffold_550:987..1504-

>EsuBft1833_6a-0001 ID=EsuBft1833_6a-0001|Name=EsuBft1833_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=180bp|location=Sequence derived from alignment at Scaffold_550:987..1504- (Ectocarpus subulatus male Bft15b)
ATGGATATCACAGAGAGATGGCGAATGATGTGCCGCCGTTGTGATATTGG
CGTACGCGGTGGCACATTGCTAGTGCCGCATATTCCACATCGGGGACAAA
ACAACCCTACCCTGTCGGCTGTTGGTGACAACCAACATGTTGCTCGCGTT
GGACAGGGTGTGGACTTACAGACCATATGA
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