EsuBft712_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft712_4a-0001
Unique NameEsuBft712_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_548contigScaffold_548:270291..275274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LJR7
ProteomeIdEsuBft712_4
Protein domainsIPR016193
Protein domainsG3DSA
Protein domainsIPR015517
Ownerapollo_admin@sb-roscoff.fr
Notedeoxycytidylate deaminase os:rattus norvegicus gn:dctd pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length929
Hectar predicted targeting categoryother localisation
Evalue2.18e-83
EggNOG OGsCOG2131@1|root,KOG3127@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameDCTD
KEGG rclassRC00074
KEGG koko:K01493
KEGG ReactionR01663
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00429
GOsGO:0003674,GO:0003824,GO:0004132,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006231,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009157,GO:0009162,GO:0009165,GO:0009176,GO:0009177,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0015949,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019239,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046073,GO:0046078,GO:0046385,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EC3.5.4.12
DescriptiondCMP deaminase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko02044
Cross References
External references for this mRNA
DatabaseAccession
GO0006220
GO0046872
GO0005829
GO0046134
GO0004132
GO0070062
EC3.5.4.12
GO0006206
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft712_4aEsuBft712_4aEctocarpus subulatus male Bft15bgeneScaffold_548 270291..275274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft712_4a-0001EsuBft712_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_548 270560..275274 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft712_4a-0001-exonagat-exon-61656Ectocarpus subulatus male Bft15bexonScaffold_548 270291..270568 +
EsuBft712_4a-0001-exonagat-exon-61658Ectocarpus subulatus male Bft15bexonScaffold_548 273704..273878 +
EsuBft712_4a-0001-exonEsuBft712_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_548 274289..274565 +
EsuBft712_4a-0001-exonagat-exon-61659Ectocarpus subulatus male Bft15bexonScaffold_548 274732..274749 +
EsuBft712_4a-0001-exonagat-exon-61657Ectocarpus subulatus male Bft15bexonScaffold_548 275094..275274 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft712_4a-0001-exonagat-five_prime_utr-13175Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_548 270291..270559 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft712_4a-0001-cdsEsuBft712_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_548 270560..270568 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft712_4a-0001 ID=EsuBft712_4a-0001|Name=EsuBft712_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=929bp|location=Sequence derived from alignment at Scaffold_548:270291..275274+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGTGCCTTCAACAAGTTGATGTGTTGGTCCCGTCTGGATGGTGAAAAGA
AAGCCCCAGCCCACTGCAGCTACGCCTTCTTCTCTACTTCCCTCTGCTAG
TTTCTTGCGCGGGCTGCTGGTTCTGCTGTCGGTGTCCGTCTGCTGCTCAT
CATCATCGTCATCATCTTGTGACTTGCGGATCGACGGCGGCGGTGGCAGT
GCTGGGGTCGCTGGAGGTGCGCTCTGTTCCCAAGGGCACTGCCTCCCGCA
AGCGCACGCCTGGCGGACCATGAGTGGGCGCGACAAAAAAGAAGTGCAAG
TCGTCCCCACGGCCACGGCCAGCTCCAATGCCGACACCGCCCAAGACGAG
GTGCCACGTCGGGCACCACGTGATGTACTTGGCGAGACGACCGCTGTTCG
CGATTCTATCAAGCCATCTCGAGGCGCCACCCTCCCCGTCGAGGGGAACA
GAGCAGCGAAACGCCTCCGGCATGCGCCCCTTGCGGACGCCGCGTTGCCG
ACCGAGGCAGCAGAGACCAACGCTGGGCGGGCGCGGTCGCCGAGTGGTAA
GGAGGCGGCGGAGGGAGAGGGCGTCGCGGCGGGAGGCGTCGCCGCCGCCG
CCGCCGCCGCCGCCGCCGGTAACCGGACGCAGAAGAGGATTGATTACCTG
GTGTGGGATGACTACTTCATGTCGGTCGCGTTTCTCAGCGCGATGCGGTC
GAAGGATCCGTCTACCCAGGTCGGGGCTTGGTTGCGTTGCGTGACCAGCA
TCGTAAACCAAGACAAGCGCATCGTGGGCATCGGTTACAACGGGTTCCCG
ATGGGATGCAGCGACGACGATCTGCCGTGGGCGCGCCGGGCAGACGACGA
GCTGGACACGAAGTACCCGGTGAGGCCGGTCGGCATGTTCCTCCTAGTCC
GTTGTCTGAACACGCCGGCTCTGTTCTGA
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protein sequence of EsuBft712_4a-0001

>EsuBft712_4 ID=EsuBft712_4|Name=EsuBft712_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=219bp
MSGRDKKEVQVVPTATASSNADTAQDEVPRRAPRDVLGETTAVRDSIKPS
RGATLPVEGNRAAKRLRHAPLADAALPTEAAETNAGRARSPSGKEAAEGE
GVAAGGVAAAAAAAAAGNRTQKRIDYLVWDDYFMSVAFLSAMRSKDPSTQ
VGAWLRCVTSIVNQDKRIVGIGYNGFPMGCSDDDLPWARRADDELDTKYP
VRPVGMFLLVRCLNTPALF
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mRNA from alignment at Scaffold_548:270291..275274+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft712_4a-0001 ID=EsuBft712_4a-0001|Name=EsuBft712_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4984bp|location=Sequence derived from alignment at Scaffold_548:270291..275274+ (Ectocarpus subulatus male Bft15b)
GTGTGCCTTCAACAAGTTGATGTGTTGGTCCCGTCTGGATGGTGAAAAGA
AAGCCCCAGCCCACTGCAGCTACGCCTTCTTCTCTACTTCCCTCTGCTAG
TTTCTTGCGCGGGCTGCTGGTTCTGCTGTCGGTGTCCGTCTGCTGCTCAT
CATCATCGTCATCATCTTGTGACTTGCGGATCGACGGCGGCGGTGGCAGT
GCTGGGGTCGCTGGAGGTGCGCTCTGTTCCCAAGGGCACTGCCTCCCGCA
AGCGCACGCCTGGCGGACCATGAGTGGGGTGAGTGCGGACGGTTCCTCTT
CAGAGAGAAGACACAGCCCACGGCAAGACTGTCCTCGGTTCTCCCGATAC
GATACACACAGCTTGGTGTACGCAGGCCGTCACGGCACCAAAGCCGCTGT
GTCCGCATGTGCATACAGCAGCAGATGTGCGGCTTTCGCTTGCGCGGGTG
TCCCACCCGCGGCACGACATGGGTGTAGCCTACATGCCAGTGTCAAAGTG
GAGTTCTTCGTCTCGCCGCCGGATGTTCGGTTTGTAGCCTGAGCGGTAGC
AGCAGCAACAGCGTACTGAAACACGAGCTCCGTCTCGACAGCAGCAGCAA
GTCCGCAAGATTCCGCCAGCTGTTTGAATTTTTGAATTTTGTCCTCTGGA
CGTATATACAGGAGTACTATACCGAAGGTTGCATAAGATATCACACCCCC
TGGACTGATTTTCGAAGCTCGATTTCTCGGCAGGACAAGCAGTGACGATG
CCGAAAACTGCGGCGTTAGAACCGTCTCGTCAAGAACTTTCCGAAAACAT
ATCCTTTGATTTCGGCATCCTCTTCGTCGTTGAGTAATCGAGCTTTGAAA
ATCGGTCCAGGGATTGTGATGTCGCACGAAACCTATGGTAGGGGAGTGAA
GGGCCTCGCTGCCCCCAGCAGGCGCCGGGGCCCGAATCGCAAACCGAAGG
TAGTTAAATTGGATGATTCTAAGATCTGTGCAATATGTTGGGGAATGGTC
GTGCCCAACGTATCGTATTCGTCGATGACGCCGCTGACCTCCCGGTTGTG
GCCTCTCAGGGCTGGACGGATGTGGTACAAGTTGTCCAAACGTCCATCAA
CCAATGTTTCATTCGTTGTGTAGTCTAAGCATGTTTTTTTTTTGTGCTGT
TGCAGCGCTCGTGAGATGGCCATCGCTTCTTCCGTGAGGTTTTTCGCCCG
ATCTGCAAATCCACCGCTAGAACTGGACGGTATGATAACTCTATCCCTCT
AGCAGTCCCGAGGGATCTTGATATCCGTGACACCGCCAAATTGTGGGTAG
TATAATGACGTGCGGAACTTGTCTTGGTTATCTTGGTTATCTGCGTCAAA
GGTGACTCGTTGATCCTCGATGCAGCTGAACAAGTCGATGAAGAATTCGT
TCACCAAAGGATCAAGTTGTTGAAATCGGGGTTCCCGAACCAATAACAAC
TGTGTTACACATGGTGCGGGTGTGACAGTATACCAGTTGTGCTTTTCATG
GCAACGTGCAGCTGGATGCCCTGCCTTATGGGAAAAGCAATGGGAACGTT
AACGGCAAACAGTCCTTCTCGTAAGCGGAGATGACGTTTTTCTCGCCGGT
GGGTGTCCTGGTCATTGCTGCTCTTCCACGCGGCCTGACCCCTTTTGTTA
GCTCGTGTGTGGACGGCCATTATTGCCGTAGGAGGAGCACATCAGGTGAC
GAATACGCCAAGGAGTTTGATATCGTTCTGGATCGAGGCCTAAGGCGACA
TGCGTATAACAGAACCGTTGATCTTTCGATTTTTGGCAAGTGAGTGTGGT
CTTACAGATAATAAATGGATTGCAATGCAGACAGTACATGTCTGATGATA
TTGCGATCATTGTGTAACCATGCTAGCTTCTTTCTGAGGAGGGAATCGAA
ACATATGTTAATGAAACATATGTACAATTGTTTGGAATCAAAAGAAAGGA
AGTAGAACATGTAACTGAGTTTGTTTCACATCGCACGCACCGGCTGCTCA
TTGCAGCTGTAAGGCGGCCAATATACGGCGAAACCTGTTGGTAAGCCGTC
CGTATCTTTTGTCATTATGGCTTCATCGAGTTCACCGTAGCCGTAGTTGG
GATCGTGCCGTAGCCAATTGAAGTGACGTCCATTCACTGTTTGTCCTCTT
TGGTTGTTGTACGTCCGTCCGAACAGTAATAGCTCGGAGATGTCGAAGTG
TAGTGTAGATGTCATTGACTGTGGTGGTTGCGAGAACAGTGCAGAACTCT
AGTCTGCACGTGTTGCAGCGGTGGACACATACATACTCTCGCCGACTTTG
AACGTTACAAAGAGGTACTTGTTTGCATTCACGCAGGCGGTCTGCATATC
GTGCTCTTGATTGTCGATTCGTCGGACGAGGCCACCCTTGCTTGTGATGC
TGTTGGCGGGTGACCCACACATAGAGTCCGCTTGCATGTCTGCTACCCAC
ATCAAAATCATGATGCACAACGTTATACAGAAGCACGTGATACAGGATTA
GTCTACAAGCTGTGTACCATACCTTCGTTGTCGTAATCTACACGGTTGTA
TTTAGTGTGATTGGTGCATGTTTGCGTGGGGCAGCAGCTGCTTGGGACAG
CAGTAGCAGTGCATAGACTGACATGCCTGGACGCTGTGCACGTCGACGAG
TCACCATTACCTGCAGTGACAAACACATAAGAGGTCGCAATACCCGTCTG
CTGCACCGCCGATGGACGGTAAGAGGTTGTGTGTACCATCCACAGTCTCT
CTCGGGAATCGCGAATTGGTGTCCTTCGACGCTGAATATGGTTGTCGTGC
GTATTACACGCTACATGTAGCAGTACATGCTAGAGTATGTCCTGTGCGTT
TCAGCCCCCGTGACCTGCAATGACATACCGGCCGGCAGAAGGGCACATGT
CCGCTGTACAGCAGTGGGAAGCTGTGTGGATCGCGCAATGGCCGTTTTGA
CGTCAACACAGACCTCGGGATTTATCCACGCATGCATATCTTCAAAAAAG
ATTCCAAGAAACACTGAAAGTTTGTGTAGAAGAAATCCTTCATTACTTTC
TAGTTGTGCGTCCGACGATGACATTCCTACAAATGATATACTTTGTAGAC
TACAGCGGCAGTCGTCTTTTCAGCAGCAGTAGAAGATGTGTAAATGTTTG
AGAGTGCGCAGAGCCTGGCGCCCGACGCGTCTCTCACCAACGGTGGCGTG
CCTCGTGGTGCGTCGATGCAAATCGTAGCATTCAGAGGAGGTGCAGCTCG
AAAGGGACACGAAACGTGATGCATTCGCTGCAAGTGCGGCGGAATGTTGT
TTTGTAATTGTCGCATCTACCAACATCTACAGCCATTCCTCCTTGCCAAG
CTTGGCATTCTGCACTCCGCTGCTGCTGCTGTTATGCCTCTGATGTTGCT
GGGTGCGTTCAAGCGCGACAAAAAAGAAGTGCAAGTCGTCCCCACGGCCA
CGGCCAGCTCCAATGCCGACACCGCCCAAGACGAGGTGCCACGTCGGGCA
CCACGTGATGTACTTGGCGAGACGACCGCTGTTCGCGATTCTATCAAGCC
ATCTCGAGGCGCCACCCTCCCCGTCGAGGGGAACAGAGGTAAAACTCGCC
CGCCGTACACGCTTGGTAGAGATCCGGGAAACGTAAGTACCGGACAGCAG
TAGCGTTTAAGGCCAGGTCAGGAGTCGGGGGACCAATCATATTTTGAAGA
ACGGCGCACTTGCTGCTCCGCGGCGGTTTGGCACGCAGTGCAGGGACAGA
GTTGTGCGGCACAGCAGCAGTCAGCGGGAGGACTGCACAGCCTGGGTACG
TTGAGAATTGCCTATGTAACAGAAGGCGCCTCAGCAAGGACGGGCCTACT
AGGCCCAACACCCCCATGACCCAGAACGATATGTGTTCCTCCCACCTTCA
CCGCAAACGCCGCCGTCGCCTCTTGACACACGTGGCCACCCCACTCCCTC
CACGGGGACCCCGCCGCCGCCGCCGCCGACTACAATTACTGCATCCAGCA
GCGAAACGCCTCCGGCATGCGCCCCTTGCGGACGCCGCGTTGCCGACCGA
GGCAGCAGAGACCAACGCTGGGCGGGCGCGGTCGCCGAGTGGTAAGGAGG
CGGCGGAGGGAGAGGGCGTCGCGGCGGGAGGCGTCGCCGCCGCCGCCGCC
GCCGCCGCCGCCGGTAACCGGACGCAGAAGAGGATTGATTACCTGGTGTG
GGATGACTACTTCATGTCGGTCGCGTTTCTCAGCGCGATGCGGTCGAAGG
ATCCGTCTACCCAGGTCGGGGCTTGGTGAGTTAGCTGGGTGATCTCGCAG
CTGCTGGTAGCAATTGTACCCGCCGTTGCCAACACACCATACCAAAGAAA
AATGGTAGTTTGCGTTACAGTGGTGTGTGCCACTAGTGTTTGGTTTACTC
GTGAGCTTTTGTTTAGTGCTATTGTTTGTGTTTGTTTGCAGGTTGCGTTG
CGTGACCAGGTATCTCCAGCAACGCCAGAGGCGTGTTTTCGGGAGCCCAC
ACCGCGTGCGTCCCATGTTTCTCCTCCCCTGGACCCTCTTCCTCGCTGCA
ACCACGTGGTTTACCCTCTTTCTGAGCTCAAGGATTGAGACGGTGGCGTT
TGCTCCTGCTGCCGCCCCCACATCGCCGCTCCCTGCTCGCGGCCCGATAC
AAACCCCTCAAATGGAGTATGATGTAACACTTTTCGCGTGCGTTCGATGC
CTCTGGTTGTTTTCCTTTGACTTGCAACTGGACACTTTCGTTTCTTCGAC
TCTAACGGCCATGCGGTCAACGACGACGACGACGACGACGACGACGACGA
CAGCATCGTAAACCAAGACAAGCGCATCGTGGGCATCGGTTACAACGGGT
TCCCGATGGGATGCAGCGACGACGATCTGCCGTGGGCGCGCCGGGCAGAC
GACGAGCTGGACACGAAGTACCCGGTGAGGCCGGTCGGCATGTTCCTCCT
AGTCCGTTGTCTGAACACGCCGGCTCTGTTCTGA
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Coding sequence (CDS) from alignment at Scaffold_548:270291..275274+

>EsuBft712_4a-0001 ID=EsuBft712_4a-0001|Name=EsuBft712_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=660bp|location=Sequence derived from alignment at Scaffold_548:270291..275274+ (Ectocarpus subulatus male Bft15b)
ATGAGTGGGCGCGACAAAAAAGAAGTGCAAGTCGTCCCCACGGCCACGGC
CAGCTCCAATGCCGACACCGCCCAAGACGAGGTGCCACGTCGGGCACCAC
GTGATGTACTTGGCGAGACGACCGCTGTTCGCGATTCTATCAAGCCATCT
CGAGGCGCCACCCTCCCCGTCGAGGGGAACAGAGCAGCGAAACGCCTCCG
GCATGCGCCCCTTGCGGACGCCGCGTTGCCGACCGAGGCAGCAGAGACCA
ACGCTGGGCGGGCGCGGTCGCCGAGTGGTAAGGAGGCGGCGGAGGGAGAG
GGCGTCGCGGCGGGAGGCGTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGG
TAACCGGACGCAGAAGAGGATTGATTACCTGGTGTGGGATGACTACTTCA
TGTCGGTCGCGTTTCTCAGCGCGATGCGGTCGAAGGATCCGTCTACCCAG
GTCGGGGCTTGGTTGCGTTGCGTGACCAGCATCGTAAACCAAGACAAGCG
CATCGTGGGCATCGGTTACAACGGGTTCCCGATGGGATGCAGCGACGACG
ATCTGCCGTGGGCGCGCCGGGCAGACGACGAGCTGGACACGAAGTACCCG
GTGAGGCCGGTCGGCATGTTCCTCCTAGTCCGTTGTCTGAACACGCCGGC
TCTGTTCTGA
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