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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LJR1 |
| ProteomeId | EsuBft712_10 |
| Protein domains | PTHR12217 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | eukaryotic translation initiation factor 2d os:homo sapiens gn:eif2d pe:1 sv:3 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 402 |
| Evalue | 1.31e-50 |
| EggNOG OGs | COG2016@1|root,KOG2522@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K15027 |
| GOs | GO:0001731,GO:0002181,GO:0002183,GO:0002190,GO:0002192,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006413,GO:0006518,GO:0006725,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0065003,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0110017,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 |
| Description | formation of translation preinitiation complex |
| COG category | J |
| BRITE | ko00000,ko03012 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0043229 |
| GO | 0006413 |
| GO | 0003723 |
| GO | 0005737 |
| GO | 0071826 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft712_10a-0001 ID=EsuBft712_10a-0001|Name=EsuBft712_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=402bp|location=Sequence derived from alignment at Scaffold_548:208191..209569- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CTCGCAACCTCGCAGCTTTGCACGGTACAAGCTGCATTTTCATTGCACAC
CGCTGTATGCGTACGACGCACAATGTTTCGAAAGAAGCAAGACGTGGCTG
AGCGGAGCCGGAGCCTGCTCAAGAACAGCGCAGCGAAGAAGATTAAAGTG
GAAATTGTTTCGGCGCTCCCTCTGCTGACCAGAGAGATCATCGATGAGCT
GATGCCCAGCAAGGATGGCATAGAGGTGGTCAAGCTCGCCACCCGCGCCC
TGGTGTACTTCCACGTCCCCACCAAGACCCCCCTCTTCTTCGACTCCGAC
GGCCGCAACAACCTCTTCCCCACCGTGTACGCCCTGTGGAGGGTCGGGAA
ATTGAAACCGACAACGCCAGGAGAGGCGGCGGCGGCGGGAGGGGGGGGNN
NN back to topprotein sequence of EsuBft712_10a-0001 >EsuBft712_10 ID=EsuBft712_10|Name=EsuBft712_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=110bp
MFRKKQDVAERSRSLLKNSAAKKIKVEIVSALPLLTREIIDELMPSKDGI
EVVKLATRALVYFHVPTKTPLFFDSDGRNNLFPTVYALWRVGKLKPTTPG
EAAAAGGGGX back to topmRNA from alignment at Scaffold_548:208191..209569- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft712_10a-0001 ID=EsuBft712_10a-0001|Name=EsuBft712_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1379bp|location=Sequence derived from alignment at Scaffold_548:208191..209569- (Ectocarpus subulatus male Bft15b)
CTCGCAACCTCGCAGCTTTGCACGGTACAAGCTGCATTTTCATTGCACAC
CGCTGTATGCGTACGACGCACAATGTTTCGAAAGAAGCAAGACGTGGCTG
AGCGGAGCCGGAGCCTGCTCAAGAACAGCGCAGCGAAGAAGATTAAAGTG
GAAATTGTTTCGGCGCTCCCTCTGCTGACCAGAGAGATCATCGATGAGCT
GATGCCCAGCAAGGTAGGAATAAAGTATCATGCTCCCTAATCGTGCGAGG
ACCAAGTTGTTGCAGTGACGGAAAAGGGTGGTGCACAACCTAGCCTCACT
ACTGCTGCTATGCACGGGATAAGTGCAATGCTGCAAGATGTAGATTGACC
GAGCTGGACTTTGCGCAAGAAACCTGTTGACTTTGTTATCTATCCGCAAG
CGCTGTGTGGCCTCTCTGACTGTTTCATGTATCGTAACAATCGGGCGGTG
TGCTCCTTCTTCACTTGCCGCATTGGCAGAAATGCCGGCTTTGTTTGCCT
CTCCCCTGCCCACTCCCCCTTTTGGTTGCCACCACAAAATACTGCTTGTT
GTTGAAATATTATTTTTGGTACAGGTCGGTGCGTCACTACTGCTGTATCT
CACAAATAACGTCACTAGCTTGCCGGATCGCACGCCGCCGCAGCCGACAG
CTGACCTTATCAGCATCCAAGCAGAGCTTTACGGCTCCAAAGCTTGCCCT
GGCTTAGATCAATTTCTTTTGGGTCGGTCGTACCTGTACGACAACTGCTG
CTCCCCGGCTCCTCCAAGCACGAGAAGGAGAAGCAGGGCCGACGACGAGT
CGAATGGGGCGGGGGGTGCTATTATGTCTTGCATGCCGTAAGGGTTAGAC
CAATGACCCACGCGTCCTCGAGAGGACGGAGTATTGTTCCCACAGGACCG
ATCAAGTGCGGCCAATCGTTCCGACGTGTCGAGCGGGGGCGGGATCATTC
GACGATCGATTTATAGTACGCGAAGAAACGTCTGGTTCGGTATGTGGTCG
AACCCGCAGCACGCAGCCCCGTGTGTCCATTGCACGAAGTCTGGAATGAA
GATCCCCCCCGCCCCTCCAACCCGGCTGATCGCGCCGTCCCGGTATTGTA
AGGATGCGAGGTCAAAGGTCTAACGATTACGGCATGCGTTTACATGGGCA
CACCCTCCTCGCCCATTCCGGCGTCATTTCGTCTCCTTAGGATGGCATAG
AGGTGGTCAAGCTCGCCACCCGCGCCCTGGTGTACTTCCACGTCCCCACC
AAGACCCCCCTCTTCTTCGACTCCGACGGCCGCAACAACCTCTTCCCCAC
CGTGTACGCCCTGTGGAGGGTCGGGAAATTGAAACCGACAACGCCAGGAG
AGGCGGCGGCGGCGGGAGGGGGGGGNNNN back to topCoding sequence (CDS) from alignment at Scaffold_548:208191..209569- >EsuBft712_10a-0001 ID=EsuBft712_10a-0001|Name=EsuBft712_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=330bp|location=Sequence derived from alignment at Scaffold_548:208191..209569- (Ectocarpus subulatus male Bft15b)
ATGTTTCGAAAGAAGCAAGACGTGGCTGAGCGGAGCCGGAGCCTGCTCAA
GAACAGCGCAGCGAAGAAGATTAAAGTGGAAATTGTTTCGGCGCTCCCTC
TGCTGACCAGAGAGATCATCGATGAGCTGATGCCCAGCAAGGATGGCATA
GAGGTGGTCAAGCTCGCCACCCGCGCCCTGGTGTACTTCCACGTCCCCAC
CAAGACCCCCCTCTTCTTCGACTCCGACGGCCGCAACAACCTCTTCCCCA
CCGTGTACGCCCTGTGGAGGGTCGGGAAATTGAAACCGACAACGCCAGGA
GAGGCGGCGGCGGCGGGAGGGGGGGGNNNN back to top
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