Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 67593.Physo139458 |
| ProteomeId | EsuBft986_2 |
| Protein domains | Coil |
| Protein domains | IPR013103 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 4776|Peronosporales |
| Length | 2235 |
| Evalue | 4.2e-40 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,3QH4V@4776|Peronosporales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | GAG-pre-integrase domain |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0005515 |
| EC | 3.1 |
| GO | 0003824 |
| GO | 0097159 |
| GO | 1901363 |
| GO | 0004518 |
| GO | 0090304 |
| GO | 0016740 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft986_2a-0001 ID=EsuBft986_2a-0001|Name=EsuBft986_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2235bp|location=Sequence derived from alignment at Scaffold_548:137712..140175- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCTAACCGAATCTGGAACAGTAATCGTCACCCGAAATTTCACCTGTCG
CCAAGTGCCCGCTGCTTCGCCCGGCCCCCTGCAGCCAGTGCCTCTCGCAG
ATGATGAGGAGGGCGGGGAGGGCGAGAGCAATGAGGGTGCGTCACGTCAA
GGTGGAGGGGGGCAAGAAGACCCGAGGAGTGAGTCCGACCTCGACGTAGA
CGACGCTCGTGGACTGGGGCAAGCGACTCCGCTCGTGCGCATGGGGGCGC
CTGCGGCACCCGGAAATGGGATGCAGGGGGACGAAGGCGGAGGTCCCCCG
TCGCCCTCTTCGGGAGGGGGTGACTTCGGCGGTGGCGATGACCCCGCCGA
CAACAGCAGCAACAGCAACGACAGTAGTGGCCCCAGCGACGTCTCCAACA
ACCACGACGGAGGCGACAGCGAGCCACTCAGCGGCGACTCTGGTGATGAG
AGCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTCTCCA
ACAACCACGACGGAGGCGACAGCGAGCCACTCAGCGGCGACTCTGGTGAT
GAGAGCAGCAGCGGGAGCGAGCCCGTCAGCAGCACATCTAGCCACGACGG
CAGCAACGACGACGGTGACGACAGCGAGGCCGTCGACCCCGGCAGCGATG
ACGATGGCGGCGGCGAGACAAGCGACCCCGGTGAGAACGATGGTGACGGC
GATGAAGGCGGCGACCCTGAGACGCTCGAGGAGTTGAAGTACGACCCCGC
CGACAGCTGCTTCCCGTCAGGAATGGAAGGGAAGACACTTCTTTGGGGAG
CGTCGAGCGCCGGCCAGCTGCGCCATGTGCTCCAGCCCGGCCGCACCCGG
AAGCAGACCCGGGAATTGCGGAGCTCCGAGGAAGAGCCGAGCGAGGCGCC
AGCCCCCGAGGAGGCGCTGTTATCAACCATCCTGGAGACCGAAAACAGTC
CGGAGATCGTTGCGGAATATATCCGCGAATCGCTGTTGGAGGAGCGCATG
CAAGACGAGCAAGCGCACCGTGAGGAGCTGAAGAAGCGGTTACAGTACGA
TCTAGTTAAGGCGCTCCATCTTGATGCAGGGGAGCTGAAGCTGGCATTCA
ATGCAAACGAAAAGGACGACGGGTCTCCGCAACCACTCCTTGACCCAGAG
CAAAGTATTCCCTCGCCAATCGGGCAGAAGCCTGACGATGAAGAGGCTGT
CCCGCTCAAATACAAAGATGCGATGGATTCCAAGTACAAGGTGTTTTGGG
AAGCGGCGATGATGAAAGAGAAGGGTGTGAGTTCGAAGTGGGTGTTTTCG
CACAAGACGAACGAGAAGGGTATGATCACCGCCTTCAAAGCCCATATGGT
TGCGCGTGGTTTCTCACAAATTCCGGGGGTAGATTTCCACCACTCAGCTT
CTGCATGCCCGTCTACGACGTCCATCAAAACCGTGGTTGTCGTAGCCACC
GAGAACAAACAGAAGATGTTCCACTGGGACATTAAACAAGCGTACATTCA
CGCTACGCTCAAAGAAGAGTTTTTTATCAGGCTTCCCCAGGGTTGTGGTG
ACATGTCTGGCAAGGTGTGCAATGTTGAGCGTGCACTGTATGGCCTGAAA
CAAAGCGGTCGCGAGTGGGGGTTTGAAGCTGCTGATGCCCTCATCGCGAA
TGGGTACGAGCAGTGCAGGGCTGACCCGTGTGTTTTCCGTAGGATGGTTG
GCGCAGAGGTCGTAGGGCTGATCGTGATCTACGTAGACGACATTTTGTTG
GTGGCGTCCGAGCAAGAGCGTCAAGAGGTGCTTGCTTCCCTCCAGAAGAA
GTTTCCGGTGAAGGATTTGGGAGAATGCACGTGGTATGATGGGATTGGCA
TTGAGATGGACCTAGAGAACGGCATCGCCAAGTTGTCCCAGACGGCATAC
ATCGGGAGCATCATCAAGTGGTTTAACCGCCTGACGAGTGGGGCGAAGAT
CAAGGTCCTTGAAGACAACAAGGGAGCTCTTGCCCTGGTGCAGAACCCCT
TCAGCTCGGCGACAAGCAAGCACATCGACGTGCGGTACCACTTTATCCGC
GAGCTCTTCAAGTCGGGGAAGATCACCGCAGAGTATGTCCCCACGGAAGA
GCAGTACGCCGACATGCTGACCAAGGTCCTTGGTAGGACCAAACTGGAGT
ACCACCGGAAGGCCCTGATGAACTTCCCGGAGTAG back to topprotein sequence of EsuBft986_2a-0001 >EsuBft986_2 ID=EsuBft986_2|Name=EsuBft986_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=744bp
MLTESGTVIVTRNFTCRQVPAASPGPLQPVPLADDEEGGEGESNEGASRQ
GGGGQEDPRSESDLDVDDARGLGQATPLVRMGAPAAPGNGMQGDEGGGPP
SPSSGGGDFGGGDDPADNSSNSNDSSGPSDVSNNHDGGDSEPLSGDSGDE
SSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSNNHDGGDSEPLSGDSGD
ESSSGSEPVSSTSSHDGSNDDGDDSEAVDPGSDDDGGGETSDPGENDGDG
DEGGDPETLEELKYDPADSCFPSGMEGKTLLWGASSAGQLRHVLQPGRTR
KQTRELRSSEEEPSEAPAPEEALLSTILETENSPEIVAEYIRESLLEERM
QDEQAHREELKKRLQYDLVKALHLDAGELKLAFNANEKDDGSPQPLLDPE
QSIPSPIGQKPDDEEAVPLKYKDAMDSKYKVFWEAAMMKEKGVSSKWVFS
HKTNEKGMITAFKAHMVARGFSQIPGVDFHHSASACPSTTSIKTVVVVAT
ENKQKMFHWDIKQAYIHATLKEEFFIRLPQGCGDMSGKVCNVERALYGLK
QSGREWGFEAADALIANGYEQCRADPCVFRRMVGAEVVGLIVIYVDDILL
VASEQERQEVLASLQKKFPVKDLGECTWYDGIGIEMDLENGIAKLSQTAY
IGSIIKWFNRLTSGAKIKVLEDNKGALALVQNPFSSATSKHIDVRYHFIR
ELFKSGKITAEYVPTEEQYADMLTKVLGRTKLEYHRKALMNFPE back to topmRNA from alignment at Scaffold_548:137712..140175- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft986_2a-0001 ID=EsuBft986_2a-0001|Name=EsuBft986_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2464bp|location=Sequence derived from alignment at Scaffold_548:137712..140175- (Ectocarpus subulatus male Bft15b)
ATGCTAACCGAATCTGGAACAGTAATCGTCACCCGAAATTTCACCTGTCG
CCAAGTGCCCGCTGCTTCGCCCGGCCCCCTGCAGCCAGTGCCTCTCGCAG
ATGATGAGGAGGGCGGGGAGGGCGAGAGCAATGAGGGTGCGTCACGTCAA
GGTGGAGGGGGGCAAGAAGACCCGAGGAGTGAGTCCGACCTCGACGTAGA
CGACGCTCGTGGACTGGGGCAAGCGACTCCGCTCGTGCGCATGGGGGCGC
CTGCGGCACCCGGAAATGGGATGCAGGGGGACGAAGGCGGAGGTCCCCCG
TCGCCCTCTTCGGGAGGGGGTGACTTCGGCGGTGGCGATGACCCCGCCGA
CAACAGCAGCAACAGCAACGACAGTAGTGGCCCCAGCGACGTCTCCAACA
ACCACGACGGAGGCGACAGCGAGCCACTCAGCGGCGACTCTGGTGATGAG
AGCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTCTCCA
ACAACCACGACGGAGGCGACAGCGAGCCACTCAGCGGCGACTCTGGTGAT
GAGAGCAGCAGCGGGAGCGAGCCCGTCAGCAGCACATCTAGCCACGACGG
CAGCAACGACGACGGTGACGACAGCGAGGCCGTCGACCCCGGCAGCGATG
ACGATGGCGGCGGCGAGACAAGCGACCCCGGTGAGAACGATGGTGACGGC
GATGAAGGCGGCGACCCTGAGACGCTCGAGGAGTTGAAGTACGACCCCGC
CGACAGCTGCTTCCCGTCAGGAATGGAAGGGAAGACACTTCTTTGGGGAG
CGTCGAGCGCCGGCCAGCTGCGCCATGTGCTCCAGCCCGGCCGCACCCGG
AAGCAGACCCGGGAATTGCGGAGCTCCGAGGAAGAGCCGAGCGAGGCGCC
AGCCCCCGAGGAGGCGCTGTTATCAACCATCCTGGAGACCGAAAACAGTC
CGGAGATCGTTGCGGAATATATCCGCGAATCGCTGTTGGAGGAGCGCATG
CAAGACGAGCAAGCGCACCGTGAGGAGCTGAAGAAGCGGTTACAGTACGA
TCTAGTTAAGGCGCTCCATCTTGATGCAGGGGAGCTGAAGCTGGCATTCA
ATGCAAACGAAAAGGACGACGGGTCTCCGCAACCACTCCTTGACCCAGAG
CAAAGTATTCCCTCGCCAATCGGGCAGAAGCCTGACGATGAAGAGGCTGT
CCCGCTCAAATACAAAGATGCGATGGATTCCAAGTACAAGGTGTTTTGGG
AAGCGGCGATGATGAAAGAGAAGGGTGGTCTAGACAAGGCGGGACTTTCA
CGAAAATTGGCAAACTTCCCGAGGGGCGGAAGGCAGTGAGTTCGAAGTGG
GTGTTTTCGCACAAGACGAACGAGAAGGGTATGATCACCGCCTTCAAAGC
CCATATGGTTGCGCGTGGTTTCTCACAAATTCCGGGGGTAGATTTCCACC
ACTCAGCTTCTGCATGCCCGTCTACGACGTCCATCAAAACCGTGGTTGTC
GTAGCCACCGAGAACAAACAGAAGATGTTCCACTGGGACATTAAACAAGC
GTACATTCACGCTACGCTCAAAGAAGAGTTTTTTATCAGGCTTCCCCAGG
GTTGTGGTGACATGTCTGGCAAGGTGTGCAATGTTGAGCGTGCACTGTAT
GGCCTGAAACAAAGCGGTCGCGAGTGGGGGTTTGAAGCTGCTGATGCCCT
CATCGCGAATGGGTACGAGCAGTGCAGGGCTGACCCGTGTGTTTTCCGTA
GGATGGTTGGCGCAGAGGTCGTAGGGCTGATCGTGATCTACGTAGACGAC
ATTTTGTTGGTGGCGTCCGAGCAAGAGCGTCAAGAGGTGCTTGCTTCCCT
CCAGAAGAAGTTTCCGGTGAAGGATTTGGGAGAATGCACGTGGTATGATG
GGATTGGCATTGAGATGGACCTAGAGAACGGCATCGCCAAGTTGTCCCAG
ACGGCATACATCGGGAGCATCATCAAGTGGTTTAACGTGACTACTACCGC
CCCCACGCCTGCTGTCCCCGGCGCTGACCNGCGCAGAGGTCGTAGGGCTG
ATCGTGATCTACGTAGACGACATTTTGTTGGTGGCGTCCGAGCAAGAGAC
AGCCGGGGAGGGAGTGAAGGAGGCGTTGCATGTGCGTGCGGTTCTGTCAT
TCGTAGCGCCTGACGAGTGGGGCGAAGATCAAGGTCCTTGAAGACAACAA
GGGAGCTCTTGCCCTGGTGCAGAACCCCTTCAGCTCGGCGACAAGCAAGC
ACATCGACGTGCGGTACCACTTTATCCGCGAGCTCTTCAAGTCGGGGAAG
ATCACCGCAGAGTATGTCCCCACGGAAGAGCAGTACGCCGACATGCTGAC
CAAGGTCCTTGGTAGGACCAAACTGGAGTACCACCGGAAGGCCCTGATGA
ACTTCCCGGAGTAG back to topCoding sequence (CDS) from alignment at Scaffold_548:137712..140175- >EsuBft986_2a-0001 ID=EsuBft986_2a-0001|Name=EsuBft986_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2235bp|location=Sequence derived from alignment at Scaffold_548:137712..140175- (Ectocarpus subulatus male Bft15b)
ATGCTAACCGAATCTGGAACAGTAATCGTCACCCGAAATTTCACCTGTCG
CCAAGTGCCCGCTGCTTCGCCCGGCCCCCTGCAGCCAGTGCCTCTCGCAG
ATGATGAGGAGGGCGGGGAGGGCGAGAGCAATGAGGGTGCGTCACGTCAA
GGTGGAGGGGGGCAAGAAGACCCGAGGAGTGAGTCCGACCTCGACGTAGA
CGACGCTCGTGGACTGGGGCAAGCGACTCCGCTCGTGCGCATGGGGGCGC
CTGCGGCACCCGGAAATGGGATGCAGGGGGACGAAGGCGGAGGTCCCCCG
TCGCCCTCTTCGGGAGGGGGTGACTTCGGCGGTGGCGATGACCCCGCCGA
CAACAGCAGCAACAGCAACGACAGTAGTGGCCCCAGCGACGTCTCCAACA
ACCACGACGGAGGCGACAGCGAGCCACTCAGCGGCGACTCTGGTGATGAG
AGCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTCTCCA
ACAACCACGACGGAGGCGACAGCGAGCCACTCAGCGGCGACTCTGGTGAT
GAGAGCAGCAGCGGGAGCGAGCCCGTCAGCAGCACATCTAGCCACGACGG
CAGCAACGACGACGGTGACGACAGCGAGGCCGTCGACCCCGGCAGCGATG
ACGATGGCGGCGGCGAGACAAGCGACCCCGGTGAGAACGATGGTGACGGC
GATGAAGGCGGCGACCCTGAGACGCTCGAGGAGTTGAAGTACGACCCCGC
CGACAGCTGCTTCCCGTCAGGAATGGAAGGGAAGACACTTCTTTGGGGAG
CGTCGAGCGCCGGCCAGCTGCGCCATGTGCTCCAGCCCGGCCGCACCCGG
AAGCAGACCCGGGAATTGCGGAGCTCCGAGGAAGAGCCGAGCGAGGCGCC
AGCCCCCGAGGAGGCGCTGTTATCAACCATCCTGGAGACCGAAAACAGTC
CGGAGATCGTTGCGGAATATATCCGCGAATCGCTGTTGGAGGAGCGCATG
CAAGACGAGCAAGCGCACCGTGAGGAGCTGAAGAAGCGGTTACAGTACGA
TCTAGTTAAGGCGCTCCATCTTGATGCAGGGGAGCTGAAGCTGGCATTCA
ATGCAAACGAAAAGGACGACGGGTCTCCGCAACCACTCCTTGACCCAGAG
CAAAGTATTCCCTCGCCAATCGGGCAGAAGCCTGACGATGAAGAGGCTGT
CCCGCTCAAATACAAAGATGCGATGGATTCCAAGTACAAGGTGTTTTGGG
AAGCGGCGATGATGAAAGAGAAGGGTGTGAGTTCGAAGTGGGTGTTTTCG
CACAAGACGAACGAGAAGGGTATGATCACCGCCTTCAAAGCCCATATGGT
TGCGCGTGGTTTCTCACAAATTCCGGGGGTAGATTTCCACCACTCAGCTT
CTGCATGCCCGTCTACGACGTCCATCAAAACCGTGGTTGTCGTAGCCACC
GAGAACAAACAGAAGATGTTCCACTGGGACATTAAACAAGCGTACATTCA
CGCTACGCTCAAAGAAGAGTTTTTTATCAGGCTTCCCCAGGGTTGTGGTG
ACATGTCTGGCAAGGTGTGCAATGTTGAGCGTGCACTGTATGGCCTGAAA
CAAAGCGGTCGCGAGTGGGGGTTTGAAGCTGCTGATGCCCTCATCGCGAA
TGGGTACGAGCAGTGCAGGGCTGACCCGTGTGTTTTCCGTAGGATGGTTG
GCGCAGAGGTCGTAGGGCTGATCGTGATCTACGTAGACGACATTTTGTTG
GTGGCGTCCGAGCAAGAGCGTCAAGAGGTGCTTGCTTCCCTCCAGAAGAA
GTTTCCGGTGAAGGATTTGGGAGAATGCACGTGGTATGATGGGATTGGCA
TTGAGATGGACCTAGAGAACGGCATCGCCAAGTTGTCCCAGACGGCATAC
ATCGGGAGCATCATCAAGTGGTTTAACCGCCTGACGAGTGGGGCGAAGAT
CAAGGTCCTTGAAGACAACAAGGGAGCTCTTGCCCTGGTGCAGAACCCCT
TCAGCTCGGCGACAAGCAAGCACATCGACGTGCGGTACCACTTTATCCGC
GAGCTCTTCAAGTCGGGGAAGATCACCGCAGAGTATGTCCCCACGGAAGA
GCAGTACGCCGACATGCTGACCAAGGTCCTTGGTAGGACCAAACTGGAGT
ACCACCGGAAGGCCCTGATGAACTTCCCGGAGTAG back to top
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