EsuBft986_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft986_5a-0001
Unique NameEsuBft986_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_548contigScaffold_548:110765..111675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft986_5
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsTMhelix
Protein domainsTRANSMEMBRANE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length91
Hectar predicted targeting categorysignal anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft986_5aEsuBft986_5aEctocarpus subulatus male Bft15bgeneScaffold_548 110765..111675 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_5a-0001-exonEsuBft986_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_548 110765..111675 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_5a-0001-exonagat-five_prime_utr-15512Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_548 110765..111022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_5a-0001-cdsEsuBft986_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_548 111023..111244 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_5a-0001-exonagat-three_prime_utr-23800Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_548 111245..111675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_5a-0001EsuBft986_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_548 111023..111244 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft986_5a-0001 ID=EsuBft986_5a-0001|Name=EsuBft986_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=911bp|location=Sequence derived from alignment at Scaffold_548:110765..111675+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTTGTGTTTCCCGTCTAGCTCTGCCACTGCCTTGACCTATGCTTGCTGCT
CCGACGGCCGCCGCCGCCACAGCCGCAGCTTGAGCTATCGTCCCCCCTGT
AACGGCACCTGCCGTGCCTCCTGCCGCAGCTGTTGGTCGAATTTCAGCAC
AGGGACTAGAACTTGCAGTGCCGCCTCGTCCTCGTCTTTGTTCCCCTTGT
AACGCCGCCGCCCCAGCCGCTAGTAGCGGTGACGGTGGTCGAGGAACAGG
TGCGGTAGATGGTGGTGGGCTTGCTGACGTCACTTCTGCTGTTGCCGCTT
GTATTGCTGTTGCCGCTGCTGGTGATGTTGCTGTTGGTGCTTGTGGCATT
CCTGCAGTTACTGTTGCAGCTGGTTCTACTGTCCCTCCTGCTTCCGGCCC
CTCTGTTGCTGCAACTACCTCTGATGCCGCTGCTCCTACGGGACGTTCTC
TACGAGCTTTCCCCTTGCATTTCCCCTTAGAAGACGGCGACTGGGTTGAA
GCGGTTGAGGAGTTATTTGATGCCCCACGAACGACGTGTACTGCCTGGCT
CGTACTGCCTCTTCCGACGTCAGATATCGTCGTCGGTGTACTCCTCTCAC
CCGCACTTTCCTCGTCGTTGCCCATGTTGTCTTCGTTCGTAGCACCTTCG
CAACTGACTCGCTGACGCTTCCGTGTTGTTGTGTCTGCCCATCCCGTGAC
CGTACGGAAAGCTGCTGCCTGCCGTGATCGCTTTTCCTCGTCGCTCTTTT
CTCTGCGTTTGATTTCGTCCCCGGCATTTTTGCTCCAGCCGCAAGCCGCA
GGCGTTGATCCTTTCCTGCGACCCATGGTTCATCCTCTGTGGTGCTGTGC
GTGTGCTGTGGGTTGTACGTGTGTGTGCTGCGGTGAGAGAGCTGTGTCCT
TTCTCTTTGCG
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protein sequence of EsuBft986_5a-0001

>EsuBft986_5 ID=EsuBft986_5|Name=EsuBft986_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=73bp
MVVGLLTSLLLLPLVLLLPLLVMLLLVLVAFLQLLLQLVLLSLLLPAPLL
LQLPLMPLLLRDVLYELSPCISP
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mRNA from alignment at Scaffold_548:110765..111675+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft986_5a-0001 ID=EsuBft986_5a-0001|Name=EsuBft986_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=911bp|location=Sequence derived from alignment at Scaffold_548:110765..111675+ (Ectocarpus subulatus male Bft15b)
CTTGTGTTTCCCGTCTAGCTCTGCCACTGCCTTGACCTATGCTTGCTGCT
CCGACGGCCGCCGCCGCCACAGCCGCAGCTTGAGCTATCGTCCCCCCTGT
AACGGCACCTGCCGTGCCTCCTGCCGCAGCTGTTGGTCGAATTTCAGCAC
AGGGACTAGAACTTGCAGTGCCGCCTCGTCCTCGTCTTTGTTCCCCTTGT
AACGCCGCCGCCCCAGCCGCTAGTAGCGGTGACGGTGGTCGAGGAACAGG
TGCGGTAGATGGTGGTGGGCTTGCTGACGTCACTTCTGCTGTTGCCGCTT
GTATTGCTGTTGCCGCTGCTGGTGATGTTGCTGTTGGTGCTTGTGGCATT
CCTGCAGTTACTGTTGCAGCTGGTTCTACTGTCCCTCCTGCTTCCGGCCC
CTCTGTTGCTGCAACTACCTCTGATGCCGCTGCTCCTACGGGACGTTCTC
TACGAGCTTTCCCCTTGCATTTCCCCTTAGAAGACGGCGACTGGGTTGAA
GCGGTTGAGGAGTTATTTGATGCCCCACGAACGACGTGTACTGCCTGGCT
CGTACTGCCTCTTCCGACGTCAGATATCGTCGTCGGTGTACTCCTCTCAC
CCGCACTTTCCTCGTCGTTGCCCATGTTGTCTTCGTTCGTAGCACCTTCG
CAACTGACTCGCTGACGCTTCCGTGTTGTTGTGTCTGCCCATCCCGTGAC
CGTACGGAAAGCTGCTGCCTGCCGTGATCGCTTTTCCTCGTCGCTCTTTT
CTCTGCGTTTGATTTCGTCCCCGGCATTTTTGCTCCAGCCGCAAGCCGCA
GGCGTTGATCCTTTCCTGCGACCCATGGTTCATCCTCTGTGGTGCTGTGC
GTGTGCTGTGGGTTGTACGTGTGTGTGCTGCGGTGAGAGAGCTGTGTCCT
TTCTCTTTGCG
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Coding sequence (CDS) from alignment at Scaffold_548:110765..111675+

>EsuBft986_5a-0001 ID=EsuBft986_5a-0001|Name=EsuBft986_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=222bp|location=Sequence derived from alignment at Scaffold_548:110765..111675+ (Ectocarpus subulatus male Bft15b)
ATGGTGGTGGGCTTGCTGACGTCACTTCTGCTGTTGCCGCTTGTATTGCT
GTTGCCGCTGCTGGTGATGTTGCTGTTGGTGCTTGTGGCATTCCTGCAGT
TACTGTTGCAGCTGGTTCTACTGTCCCTCCTGCTTCCGGCCCCTCTGTTG
CTGCAACTACCTCTGATGCCGCTGCTCCTACGGGACGTTCTCTACGAGCT
TTCCCCTTGCATTTCCCCTTAG
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