EsuBft986_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft986_11a-0001
Unique NameEsuBft986_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_548contigScaffold_548:76866..80796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft986_11
Protein domainsSSF56672
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noterna-directed dna polymerase from mobile element jockey os:drosophila melanogaster gn:pol pe:1 s [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1433
Evalue9.29e-72
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft986_11aEsuBft986_11aEctocarpus subulatus male Bft15bgeneScaffold_548 76866..80796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_11a-0001EsuBft986_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_548 76958..80796 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_11a-0001-exonagat-exon-55060Ectocarpus subulatus male Bft15bexonScaffold_548 76866..77288 +
EsuBft986_11a-0001-exonEsuBft986_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_548 78613..78646 +
EsuBft986_11a-0001-exonagat-exon-55062Ectocarpus subulatus male Bft15bexonScaffold_548 79248..79546 +
EsuBft986_11a-0001-exonagat-exon-55063Ectocarpus subulatus male Bft15bexonScaffold_548 79673..79903 +
EsuBft986_11a-0001-exonagat-exon-55061Ectocarpus subulatus male Bft15bexonScaffold_548 80351..80796 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_11a-0001-exonagat-five_prime_utr-15507Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_548 76866..76957 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_11a-0001-cdsEsuBft986_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_548 76958..77288 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft986_11a-0001 ID=EsuBft986_11a-0001|Name=EsuBft986_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1433bp|location=Sequence derived from alignment at Scaffold_548:76866..80796+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCGAGTTACTCCCGACGTTGTCCGGACACATGCCGCACCAGCCCGTGA
GGCTAGCTATTCACCCTCACCTCGGCCGTGATACACACTACCATGGCGAA
CCAGCTACAGTACCGCAAGACAGTTACACAGTCGTCACTGCACGCCAGAC
CCGGTGCAATGCATGCTGCCGATATGGTGCATTTGCGCCATTTGAACCGC
AGCATACCGTTGTTCTACATGCTCTTTAGTGATACACCAAGTCGGCGTGA
CGAGGATGACGGCGATGCTGCGAGCGGCATAGATCTTGGGAGTCCTGCAC
AGGCGGAGGCGGAGGTGATGGAGTTAGTGATGCTTCAAGCGGCGTGGGAG
CGTGAGGAGCTGCTGCGCGTGCGTCCTGTGGACCATGCTCCGGTGATGCG
TCTGTCGCGGACGATCGACTCCGGTGATGATACTGAGCTAACCCCTGAAA
GAAAGAGAAAGAGGGCGGGAAAGCCGGCGTACTGCTTCTTCCTGGACGTG
AAAAAGGCATACGACACCGTCTGGAAAAATGGGCTGTGGAAACAACTGTC
CAAATACGGGATCAAGGGGAAAATGTGGAGAGTGCCGAAGAAGATGACAG
AGTGTACGACAAGCGCTGTCATGCTAGACGGAGAAATGTCTAAATTCTTC
GACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCAACATCGTT
CCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGATAGATGCAGTCCGG
AAGGGATGGNGGTATGCAACGAGAACAAGGAGGAACCAGTAGAACATAGA
TGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGTACACATACCT
CGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGG
TAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCCAATACTTGCA
AACCGGCACCTCCATACGNCAGAAGAGTGCCGTCATGGTCTAGAAGTGTA
CGGAATGTTGAAGGAAGGAATAGTGTTCAAGGACTACCCACATGGACCGA
TGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCTGGGACTTGGGC
CTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGA
GTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTCG
CGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGACTGAGCTG
GGAAAAATAGATGGAACGTACAGGGAGATGTTTGAGGCATGGAATAGTGA
GGAAAGGACGGTAGCTGATCTGGGGCATAGGAGGTGGGTTGAAATGGCGG
GAAGGAATATCGTTAGGATTGACAGACTAGGGAAGACATTTTTGAGCCAC
CTTTGGCAAAGTAGAAAGATTAGCCATCGGTGA
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protein sequence of EsuBft986_11a-0001

>EsuBft986_11 ID=EsuBft986_11|Name=EsuBft986_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=446bp
MANQLQYRKTVTQSSLHARPGAMHAADMVHLRHLNRSIPLFYMLFSDTPS
RRDEDDGDAASGIDLGSPAQAEAEVMELVMLQAAWEREELLRVRPVDHAP
VMRLSRTIDSGDDTELTPERKRKRAGKPAYCFFLDVKKAYDTVWKNGLWK
QLSKYGIKGKMWRVPKKMTECTTSAVMLDGEMSKFFDIEQGVPQGCTLSP
TSFQVFINDLLEVVDRCSPEGMXVCNENKEEPVEHRWKWGIEEIAVVDQY
TYLGVEIAKDCSWNAHMSKVAEKGKARAGKLHPILANRHLHTXEECRHGL
EVYGMLKEGIVFKDYPHGPMDAGTKLKVKFRTWDLGLRERRRRHRTVDEE
DDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAW
NSEERTVADLGHRRWVEMAGRNIVRIDRLGKTFLSHLWQSRKISHR
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mRNA from alignment at Scaffold_548:76866..80796+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft986_11a-0001 ID=EsuBft986_11a-0001|Name=EsuBft986_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3931bp|location=Sequence derived from alignment at Scaffold_548:76866..80796+ (Ectocarpus subulatus male Bft15b)
CCCCGAGTTACTCCCGACGTTGTCCGGACACATGCCGCACCAGCCCGTGA
GGCTAGCTATTCACCCTCACCTCGGCCGTGATACACACTACCATGGCGAA
CCAGCTACAGTACCGCAAGACAGTTACACAGTCGTCACTGCACGCCAGAC
CCGGTGCAATGCATGCTGCCGATATGGTGCATTTGCGCCATTTGAACCGC
AGCATACCGTTGTTCTACATGCTCTTTAGTGATACACCAAGTCGGCGTGA
CGAGGATGACGGCGATGCTGCGAGCGGCATAGATCTTGGGAGTCCTGCAC
AGGCGGAGGCGGAGGTGATGGAGTTAGTGATGCTTCAAGCGGCGTGGGAG
CGTGAGGAGCTGCTGCGCGTGCGTCCTGTGGACCATGCTCCGGTGATGCG
TCTGTCGCGGACGATCGACTCCGGTGATGACTGCGACGCGTATCACTAGT
CTAACCAGTGGTAGAAGGAGGAGGAGGTCCTTGGCCTTCGGTGTTCACCG
AAACTCTGGCGAGGGGAGCGGCCCTCACCGGAAGACTCGTGTTGCCATGA
ACACCCGGCAACTGAACCGGGCCAGCCTTCTCATGAGTACGTTGACCTCC
ATCGTTGTCCATGATTGTTCAGCAGCGGTTGTGAGTGTAATGTGGTGGTA
GCCTTGCGGTGGGGGTGGAGGCGGAAGGTCTGATGTAGGTTGTGCCGAGC
GGGACCAAGTCTGCTGCCGAAAAGAGCCGAAAAGGGGGCTGCGTTCCTGG
AAATTTCTGCGTGATCAAGACCACAAACATTCCACTCGCATCTTCGCAAG
CGGTTTTCGAAATCAAATTTAAATTTTGATCTCATCTCGAACTTCCTCGC
AACTTCGAAGATGAAATCCCAACGCCAGTCCGCAATCACCGTAGTGTGTC
GGATCCTCCTTTTGTGGCGTGAAATTATTTTAATGAACTTGTCTGGATCG
CGTTCAACAGGTATTATTACATGCACCCAAGATCCTCTGACCTAAATTAA
CACGACGGAGTAGGTAGTTAGACTACGTTGAATTGATGTCGTCGTGGTGT
GCGATGCGGCACGTAGTAGTCTAGACAATGTGTACAGATGGCGCCCGCAC
TTAAGAACCTCTAGTTTCGGTCGAAGCTGGGGTTCTTATTTTGCTGATCA
TCTGATCATCCTCTTCTTGTGGGCTACAAATGGCCGCTATATATAGGTTT
TAGTCTAGGGTCTAGGGTTCTTAACCGAGCTCACAAATGGTGCTCAAGTT
CTTAGATTCTGATTTTTTTTCGAGTCTCAATTTCTTATCTGTAAAGTTCT
TAAGTGCAGGCGCAATCTGTCGTCTAGACTATAATAGTAGCTAGCCTGCT
GTAGACTACAGCAGGTGTCGTCGCCGTCTTGACAAATAAGAAATCGCCGT
CCGATCTATTTTGCTTCTCAACCAGTCCAAGTTATGGATAAAAGTTGACT
CAACAATAGTCTAGACTAATCATCCCAGGTTGAGCCTGGCTGGGTCAAAT
CAACTTACTTGCCCTATTGGTCGCCGTGGGTATCCCACTTGCTAGAAGTA
AGAAACCAACCTCTCGCGCAAAGGAAAGAGGTTGCGCCGCGTTCTGTGGT
GGGCCTTCGAGCGGTGTCCAGTGTGCGCTCACAGCCTTGCGCTGTTTCCT
AGATAAAGATCACGTCTCTCGCTCGCCGCTGGGGTGGGTGTAGACGTTTC
GCCACCGGTTTTGTACCGCGGTCATCATGCCAAACCTACTCCACCAGGTG
ATGATACTGAGCTAACCCCTGAAAGAAAGAGGTACGTCCTGTTCGGAAAC
AGTCAAGCAAAAGGCGGTTTTATCCCACCACATCCTCAATACAAAGTCTA
GAAACATCGATATATTGTACTCCTCATCGGGGAAGAAGTGGTGCAAAAAA
TAATGGGGGATTCCACCTCCAACATGTCGTATCCATCCAGTCCGGCACAA
TACGCTATCCACGTGTACCTTTCTGTATCCTTGCGGGAATAGATAGCCAT
TTACTCCATATGTTAACTGGAACAACGAGAACGTGCTTCGCTGAAGAGCG
TGTGTTGTGTGTGTAGAAAGAGAAGGTACGGTACTGGACAGAACGTAATA
TCACGTTTGTTTTTAATGCGTCGAAAGGAGGGAAGGGCGCCACCATCAGT
GTCACCAACCAAACACCACACACACCATTCCCACAAAATCAGCAACCAAC
AACCTCAACGAACTATTTTCGCCCTCACACTCCCTGCGAGTATATAACCG
CGCGTGTGTGGTGCCGTGAGACGCTGATTGTACCTAAAGTTTGAAGCGAA
AGCGAAACAATGGCGATACAGAATCTATGTAACTACGTAATACTCGCCCC
CCCGCCCCCGCCCCCCCAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCC
GGCGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGACACCGTCTGGA
AAAATGGGCTGTGGAAACAACTGTCCAAATACGGGATCAAGGGGAAAATG
TGGAGAGTGCCGAAGAAGATGACAGAGTGTACGACAAGCGCTGTCATGCT
AGACGGAGAAATGTCTAAATTCTTCGACATTGAGCAGGGGGTCCCACAAG
GTTGCACGCTGTCCCCAACATCGTTCCAGGTGTTCATCAACGATCTGTTG
GAAGTCGTAGATAGATGCAGTCCGGAAGGGAGTAAAAATAGGGGACACGG
AAACGTCGGTGTCAGGAATGCCGTTTGCGGATGATTTTGTCGGTATGTCG
GACACCCCTGAGGGACTGCAACTGCAAATTGACGCGGCGAAGAAGTTTAC
TGACAAGTGGNGGTATGCAACGAGAACAAGGAGGAACCAGTAGAACATAG
ATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGTACACATACC
TCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAG
GTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCCAATACTTGC
AAACCGGCACCTCCATACGNCAGAAGAGTGCCGTCATGGTATGGAACGAG
AACAAGGAGGAACCAGTAGAGCATTGGTGGACGTGGGGGATCGAGGAGAT
TGCAGTAGTGGACCAGTACACATACCTCGGAGTAGAGATCGCAAAAGACT
GCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGA
GCAGGGAAGCTGCACCCAATACTCGCAAACCGGCACCTCGATACACGCAT
CAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGATGAAACGCTGGAAACGGAGGGT
CTACAGGGGTTCAAGGAGAAAATATCTGTTGCTTGTGCCGAGAGCGAAAA
ACATAACCTTAGGAAATAATCCAAGAATAAGGAAGGTCTAGAAGTGTACG
GAATGTTGAAGGAAGGAATAGTGTTCAAGGACTACCCACATGGACCGATG
GATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCTGGGACTTGGGCCT
TCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGAGT
TCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTCGCG
GAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGACTGAGCTGGG
AAAAATAGATGGAACGTACAGGGAGATGTTTGAGGCATGGAATAGTGAGG
AAAGGACGGTAGCTGATCTGGGGCATAGGAGGTGGGTTGAAATGGCGGGA
AGGAATATCGTTAGGATTGACAGACTAGGGAAGACATTTTTGAGCCACCT
TTGGCAAAGTAGAAAGATTAGCCATCGGTGA
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Coding sequence (CDS) from alignment at Scaffold_548:76866..80796+

>EsuBft986_11a-0001 ID=EsuBft986_11a-0001|Name=EsuBft986_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1341bp|location=Sequence derived from alignment at Scaffold_548:76866..80796+ (Ectocarpus subulatus male Bft15b)
ATGGCGAACCAGCTACAGTACCGCAAGACAGTTACACAGTCGTCACTGCA
CGCCAGACCCGGTGCAATGCATGCTGCCGATATGGTGCATTTGCGCCATT
TGAACCGCAGCATACCGTTGTTCTACATGCTCTTTAGTGATACACCAAGT
CGGCGTGACGAGGATGACGGCGATGCTGCGAGCGGCATAGATCTTGGGAG
TCCTGCACAGGCGGAGGCGGAGGTGATGGAGTTAGTGATGCTTCAAGCGG
CGTGGGAGCGTGAGGAGCTGCTGCGCGTGCGTCCTGTGGACCATGCTCCG
GTGATGCGTCTGTCGCGGACGATCGACTCCGGTGATGATACTGAGCTAAC
CCCTGAAAGAAAGAGAAAGAGGGCGGGAAAGCCGGCGTACTGCTTCTTCC
TGGACGTGAAAAAGGCATACGACACCGTCTGGAAAAATGGGCTGTGGAAA
CAACTGTCCAAATACGGGATCAAGGGGAAAATGTGGAGAGTGCCGAAGAA
GATGACAGAGTGTACGACAAGCGCTGTCATGCTAGACGGAGAAATGTCTA
AATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCA
ACATCGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGATAGATG
CAGTCCGGAAGGGATGGNGGTATGCAACGAGAACAAGGAGGAACCAGTAG
AACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGTAC
ACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACAT
GTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCCAA
TACTTGCAAACCGGCACCTCCATACGNCAGAAGAGTGCCGTCATGGTCTA
GAAGTGTACGGAATGTTGAAGGAAGGAATAGTGTTCAAGGACTACCCACA
TGGACCGATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCTGGG
ACTTGGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAA
GACGACGAGTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCA
TGTAGTCGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGA
CTGAGCTGGGAAAAATAGATGGAACGTACAGGGAGATGTTTGAGGCATGG
AATAGTGAGGAAAGGACGGTAGCTGATCTGGGGCATAGGAGGTGGGTTGA
AATGGCGGGAAGGAATATCGTTAGGATTGACAGACTAGGGAAGACATTTT
TGAGCCACCTTTGGCAAAGTAGAAAGATTAGCCATCGGTGA
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