Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft986_12 |
| Protein domains | TRANSMEMBRANE |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TMhelix |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 91 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | RGS domain |
| Ec32 ortholog | Ec-12_002740.2 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft986_12a-0001 ID=EsuBft986_12a-0001|Name=EsuBft986_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=916bp|location=Sequence derived from alignment at Scaffold_548:74814..76641- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTACCGGTGGTGAGGATGTGAGGATCTACCCATCACCGCGCGCTCCCACA
CTAAATTACAACCATTGTTCGCCCCTCGCCCCAAGTTTCGGCGGCACGCT
GCGCTTCCTCCGCAGCTTGCACCCCAGCGCCCACCAGGCTCAAAGCACAG
GGGGGAGACACAGGAGAAGGGACACCGGACCAATCATGGCCGATGGCCCA
CCCACTTCGATCGATATCGATGGATCTAGCAGCCGTGGCGCCGGTGGTCC
ACCTTCCTAGATTTGACGTCGGAGGAGGCACCGGATCGTCCAGCTATTGG
GAGCAACGGTTTGGGGATGGATACTTCGATCCGTCAAGCTTCATCCCGAG
CTACACAACCACGGACAAGGTCTTGGCGATCTTCAGGCTCGCCGTCGGGA
CCATTCTCGTGGTGCTCGGATCCTACCCGCTGGTGCGATTCTACCGGTCG
AGATGGATATTGGATATTCGCACAAGGTGAAGGAAGAAGAACGGGTGGTG
GTGTGACCTTTAAGGCAGCAGTAACCACCACACACAGCAGATTACGACAT
ATTTATATAGTAATTTGACGTTGTTTTACCCCGAAAATCTCGGAAATGAA
CCAGCGTTGTTTGTGTCTAGAGTTTCGAGTTCTTCTGCATTGCATGTGGA
TGGAAGAGGGCGTCGTTCAGTTCTTCGTGTACTGGGTGAGGCATCGGCTC
TTCTTGCAACCATGGGGAGCGTTGTACCTGTCGACTAGAAGGACATTCGA
TTTCGTCGTGCTCGCAGGAACTCCTCTTGTAGACTACTGGTAAACGTTTT
CGTTCCCCACATTCTCGAGGTTTGCATGACTCCCTGTGGCGTACAACACG
CGACTCAGCCCAGCCCGGTTGCAGACCTGGAACCTGTCCAGGTGTTGGTA
TCTTACTGTAGTCGAT back to topprotein sequence of EsuBft986_12a-0001 >EsuBft986_12 ID=EsuBft986_12|Name=EsuBft986_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=95bp
MAHPLRSISMDLAAVAPVVHLPRFDVGGGTGSSSYWEQRFGDGYFDPSSF
IPSYTTTDKVLAIFRLAVGTILVVLGSYPLVRFYRSRWILDIRTR back to topmRNA from alignment at Scaffold_548:74814..76641- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft986_12a-0001 ID=EsuBft986_12a-0001|Name=EsuBft986_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1828bp|location=Sequence derived from alignment at Scaffold_548:74814..76641- (Ectocarpus subulatus male Bft15b)
GTACCGGTGGTGAGGATGTGAGGATCTACCCATCACCGCGCGCTCCCACA
CTAAATTACAACCATTGTTCGCCCCTCGCCCCAAGTTTCGGCGGCACGCT
GCGCTTCCTCCGCAGCTTGCACCCCAGCGCCCACCAGGCTCAAAGCACAG
GGGGGAGACACAGGAGAAGGGACACCGGACCAATCATGGCCGATGGCCCA
CCCACTTCGATCGATATCGATGGATCTAGCAGCCGTGGCGCCGGTGGTCC
ACCTTCCTAGATTTGACGTCGGAGGAGGCACCGGATCGTCCAGCTATTGG
GAGCAACGGTTTGGGGATGGATACTTCGATCCGTCAAGCTTCATCCCGAG
CTACACAACCACGGACAAGGGTAAGGTATAGAGCAATATGGAGGGCACGG
GGAGGGCACAGAGTTGCTTGGGAGGCTAGGCAAGGAATCTGTGTTGGAGC
GGTGTTCCTCGCAGCGCGGCGAATTTCCGAAAAAACCGTTCCGATTTTTG
CTGCAGTTCGTGTCTCGTTGTGTAAATCTCGTTCTGTGTCTCTCGTGCGC
GTTCTTCGACAGGTGTCCTACTGCTGTACATAAGAAAAAGGAGAAAAGGG
AAAGTTTTTTGACTTTTGGTCCGCAGCACACCACGTTACATACCACACCT
CACACTCACCGTGTCAGCCTTCATGCTCTCGAAAATACCGTGGGCTCGCT
CGATTCCTCCAGCTCACCTCGACCCTCTCGCTCTGGCAGGGTGCAGGCAC
GACCAACCTCACTTGCACATCAACATATCACTGTAAAGACTTCAACACAT
CCCCTTCGAGTGTAGTTATACCTCGAACGGGTAGTCTTTCTGTGTGTATA
TTTGTTTCTCCTAATATCAAAAAGTATTGTTCGCACAAGAACCGGAATGG
TTGTTCCGTGAACCAACTGCTCTGAACTTCTTCTCCCCTACAAATATTTG
CGCACTGCACTGACTGCAGAGAGACTTATTTGCACATGGCGTCTTGCCGA
CAGCGGGAGAGGTATCCACTACCTCGGTTCTCGCATACCATATGTATGGT
CGTGTTCGTGTGCTGAAGTAGCTAAGTGTTCGTCGTTCTTGTAGATGCGT
TACGTGGGTACCGTTTTCGATTCTTTTCAACAAACAGCAGCAGCCCCGCT
TTGGTCGAGCACGCGTTGTAGATGCAAGATCAACAAAGCAAAAAACACGA
CGGCGAAATAATTTTTTTGTCTACCCGATTTATTGCCGATGCAACAACTG
CTGCTGTGTCGTTGCGGTGCTGTGTCATGCAGTCTTGGCGATCTTCAGGC
TCGCCGTCGGGACCATTCTCGTGGTGCTCGGATCCTACCCGCTGGTGCGA
TTCTACCGGTCGAGATGGATATTGGATATTCGCACAAGGTGAAGGAAGAA
GAACGGGTGGTGGTGTGACCTTTAAGGCAGCAGTAACCACCACACACAGC
AGATTACGACATATTTATATAGTAATTTGACGTTGTTTTACCCCGAAAAT
CTCGGAAATGAACCAGCGTTGTTTGTGTCTAGAGTTTCGAGTTCTTCTGC
ATTGCATGTGGATGGAAGAGGGCGTCGTTCAGTTCTTCGTGTACTGGGTG
AGGCATCGGCTCTTCTTGCAACCATGGGGAGCGTTGTACCTGTCGACTAG
AAGGACATTCGATTTCGTCGTGCTCGCAGGAACTCCTCTTGTAGACTACT
GGTAAACGTTTTCGTTCCCCACATTCTCGAGGTTTGCATGACTCCCTGTG
GCGTACAACACGCGACTCAGCCCAGCCCGGTTGCAGACCTGGAACCTGTC
CAGGTGTTGGTATCTTACTGTAGTCGAT back to topCoding sequence (CDS) from alignment at Scaffold_548:74814..76641- >EsuBft986_12a-0001 ID=EsuBft986_12a-0001|Name=EsuBft986_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=288bp|location=Sequence derived from alignment at Scaffold_548:74814..76641- (Ectocarpus subulatus male Bft15b)
ATGGCCCACCCACTTCGATCGATATCGATGGATCTAGCAGCCGTGGCGCC
GGTGGTCCACCTTCCTAGATTTGACGTCGGAGGAGGCACCGGATCGTCCA
GCTATTGGGAGCAACGGTTTGGGGATGGATACTTCGATCCGTCAAGCTTC
ATCCCGAGCTACACAACCACGGACAAGGTCTTGGCGATCTTCAGGCTCGC
CGTCGGGACCATTCTCGTGGTGCTCGGATCCTACCCGCTGGTGCGATTCT
ACCGGTCGAGATGGATATTGGATATTCGCACAAGGTGA back to top
|