EsuBft986_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft986_16a-0001
Unique Name	EsuBft986_16a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_548	contig	Scaffold_548:38542..41203 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G3L2
ProteomeId	EsuBft986_16
Protein domains	IPR012337
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	198
Hectar predicted targeting category	other localisation
Evalue	1.54e-27
EggNOG OGs	2CZK4@1\|root,2SARG@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0003676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft986_16a	EsuBft986_16a	Ectocarpus subulatus male Bft15b	gene	Scaffold_548 38542..41203 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft986_16a-0001	EsuBft986_16	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_548 38542..40181 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft986_16a-0001-exon	agat-exon-55092	Ectocarpus subulatus male Bft15b	exon	Scaffold_548 38542..38649 +
EsuBft986_16a-0001-exon	EsuBft986_16a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_548 38859..38956 +
EsuBft986_16a-0001-exon	agat-exon-55091	Ectocarpus subulatus male Bft15b	exon	Scaffold_548 39383..40870 +
EsuBft986_16a-0001-exon	agat-exon-55090	Ectocarpus subulatus male Bft15b	exon	Scaffold_548 40917..41203 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft986_16a-0001-cds	EsuBft986_16a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_548 38542..38649 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft986_16a-0001-exon	agat-three_prime_utr-23798	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_548 40182..40870 +
EsuBft986_16a-0001-exon	agat-three_prime_utr-23799	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_548 40917..41203 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_548:38542..41203+
coding sequence from alignment at Scaffold_548:38542..41203+

spliced messenger RNA

>EsuBft986_16a-0001 ID=EsuBft986_16a-0001|Name=EsuBft986_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1981bp|location=Sequence derived from alignment at Scaffold_548:38542..41203+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAAGGAGATGATGGCGACCGCTGCAGGAAACACGCCGTACCCAGA
GCTGCCTGCGGAGCGTGTGAAAGACCTCCTCGTCGAGATGTACATCGCCA
CGAAGAAGGCAGTCATGAGCAACATGTTGGAGGAAGTGAAAAATGCACCT
CTGCCCATTCTGCACCACATGATCGACATCTGGACTGACAAAGGATCGGG
GCGCAAGACGCTCTGGGAGAGGCCAAGGCCTGGGGTGCTTCTCGAGATCG
TCAAGGCTATCCTGCACGAGTTCGGCTTGCGCACATCGGACCTCGCGTCG
GGTACTGCGGACAGTGGATCGGACGTCAAGTCTGTGAGCTTCAACGGCCT
CCACCCGCAGTTTGGGGTTCTGTGGAATTGGTGTTTTTGCCACCTGATGG
TCAAGGCCGCTGAGGACGGCTTTGGCACCCACGTCGACCCTCAGAAGTCC
AAGAACCCAGAAGCGCGCGACATGCTCAAGAAGCTCATCAATCTGGTCGG
GACCCTCCACAGGTCTTCCAACTTCAAGGCTAAGTTCGACGACCTTCAGG
TGGACGTGTTGGGCGAGGTCTTGAAGATCCCCAACCAAGCTCCTAAACGG
TGGCTCACCCTGGTTCGCACACTGGAGCGCGTCATCCGCTTGTGGCACGT
CTTGAGGAAACTCTACAGCGACACGGGAAAAACGTTTCCACTCGAAGAGG
GCGACAACAAGGACTGCATCCTTCAGCTCTACTCGCTGCTGCAGCCTCCT
TCCTCCGTCACGCGTGATGGCCAGTACGGGGGTGCGCCGATGCTGGCGGA
CATCTACATGAAGTGTGGCATGCTGAAGATGCGAGTGCTGGACCCGTCGG
AGGAACTCAAGGTCTTCGACATTCCGCCGCTTGGAGAAGACAGCCTCCCG
GACCGCGAGGAACAGAAGAAAGCTCTCCCGCACAAGGTGGTAGCACACGA
CGACTTGCGCCCCGTGGCACAGAAGCGCGCAACGAACTCTGCCGCGCGCT
CGTGACGAGGTTCTACAGTCGTGTGTGGGACACATCCACCCTGGACCCCT
CGGTGTTATGCGATGCTGCCTGCCTCCTGACACTGCCGTTCAGTGAGGGG
AACTACCTTTCCGCGATGAAGCTTACAGCAGAGGAGGGCAAGTACTTGCC
CGCAGGTCGTGCGTGACGGCCCCTACGCTGGACGAAAAGGTGCAAGAGAA
GCTGGATGGAGCTTGGGCCGAAATCAAGAAGCGAGCCGTCGCAGCCGTGA
AGGCAGCGCAGAGTCGGGCCGCGGGTGGTGGTGAGGGCGGGGGGGCAGGT
CCTTTGGAGCGCGCCCGCACTAGCGCCGCGGGTCCATCTCGTCGCAAGAA
TCGGAAGGACGCCTTCGCAGTTTTCGGTCGCAACGAAGTCGCCCCCCAAA
GCAGCGAAGGAGATGTGGACTTGAGGAGGAGGTCTCGAGCGAGACCACGC
GGTACAAGGGAGTCTTCATTAAGTCAACGACTAGTCTATTGAACGTGTGC
GTGTTACTGCTGTTTGGCATTTTTATTATTGTTACTGTCCATGTGTTGTC
GCAAGCTGCGAATTTGAACAACACTAACAACACAAATCTTCCCGATCCTG
CGGCCCTTCCGTGTCCTTCACCCTTCCAGTTGCCGCCCAGCGAAGCCCTC
AACTACTGGAAGACCATAGGGAAACATTCATTCCCCTCACTCAAGTCGAG
AGAGACTTCAGCCACTGCGGTCTTTTCTGTGTAGGGAACCGCATCCGAGT
AGACGAGTACTGGCTGGAAATCGTGATGTTCCTCAAAGGAAACTACTCGT
TTATTCCTGAGTACAAGGACATCCATCCCCAACATCGACGGGAAGGACAT
AGGGAAGTGCCTCCCTGCAAAGTTCAGCGGAAAAATGACGATCTCCTCAA
AGCAGAGATGGCGCTCGACCCGCTGTCAAACACCAACCCCCCCCAGGAGG
ATGTCATTGGCGTTGGCGAGGATGGGTAGAT

protein sequence of EsuBft986_16a-0001

>EsuBft986_16 ID=EsuBft986_16|Name=EsuBft986_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=334bp
MFKEMMATAAGNTPYPELPAERVKDLLVEMYIATKKAVMSNMLEEVKNAP
LPILHHMIDIWTDKGSGRKTLWERPRPGVLLEIVKAILHEFGLRTSDLAS
GTADSGSDVKSVSFNGLHPQFGVLWNWCFCHLMVKAAEDGFGTHVDPQKS
KNPEARDMLKKLINLVGTLHRSSNFKAKFDDLQVDVLGEVLKIPNQAPKR
WLTLVRTLERVIRLWHVLRKLYSDTGKTFPLEEGDNKDCILQLYSLLQPP
SSVTRDGQYGGAPMLADIYMKCGMLKMRVLDPSEELKVFDIPPLGEDSLP
DREEQKKALPHKVVAHDDLRPVAQKRATNSAARS

mRNA from alignment at Scaffold_548:38542..41203+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft986_16a-0001 ID=EsuBft986_16a-0001|Name=EsuBft986_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2662bp|location=Sequence derived from alignment at Scaffold_548:38542..41203+ (Ectocarpus subulatus male Bft15b)
ATGTTCAAGGAGATGATGGCGACCGCTGCAGGAAACACGCCGTACCCAGA
GCTGCCTGCGGAGCGTGTGAAAGACCTCCTCGTCGAGATGTACATCGCCA
CGAAGAAGGTGAAAGTTGAAAAATTGAAGTTGGTGAAAGACGTTAACCCC
TCTACGGCGAAGTTTGATTTTAAGCTTTAGTACTTGCTGTCGTTCAAGTC
ACCGATGATACAGAAAAGCAAGCAAACACAACGCTTGACGTGTCCGTTTC
GTTTTTTCTGATACCCAAACTGCTGTGTTTGATTTCCATGCCCCACAACA
CCGCTGTTTCACCGCAGGCAGTCATGAGCAACATGTTGGAGGAAGTGAAA
AATGCACCTCTGCCCATTCTGCACCACATGATCGACATCTGGACTGACAA
AGGATCGGGGCGCAAGTTCCTAGGTGTTCATCTTTTCCACGTGACTGCCA
ACTTCGAGATGAAGCACACCCTGCTCTCTATGAGTACATGAACCGGCCTG
GTGTTGGACGTGACACTTCAAGACTTGCTTCTGTTGAAACACATGTGGCG
CGTACTTCTTTCTACATAAGGGTTTAGCAGGGGTTTCTACTGGAGTTTTG
TTAGGGTATCGGTTAGCTTATTGTTTAGACTATTGGTGCCTTCTGTCATT
ACACTTTGTATTTCACGGAGAGATCGCAACGGACGTGAAATTAATTGTTT
TTGTGTTTTCCTTGCGCACTGACCACGGCTATATTGTCTAACCCCAACAC
CTGACAGAAAGCTTGAGTGCAACGTCCTTTCTGTCACCTCCGTTTCTGTT
CCCGTGCTTCCGCCCAGATCAAGCGCTACCAACCCTCCCAGGACGCTCTG
GGAGAGGCCAAGGCCTGGGGTGCTTCTCGAGATCGTCAAGGCTATCCTGC
ACGAGTTCGGCTTGCGCACATCGGACCTCGCGTCGGGTACTGCGGACAGT
GGATCGGACGTCAAGTCTGTGAGCTTCAACGGCCTCCACCCGCAGTTTGG
GGTTCTGTGGAATTGGTGTTTTTGCCACCTGATGGTCAAGGCCGCTGAGG
ACGGCTTTGGCACCCACGTCGACCCTCAGAAGTCCAAGAACCCAGAAGCG
CGCGACATGCTCAAGAAGCTCATCAATCTGGTCGGGACCCTCCACAGGTC
TTCCAACTTCAAGGCTAAGTTCGACGACCTTCAGGTGGACGTGTTGGGCG
AGGTCTTGAAGATCCCCAACCAAGCTCCTAAACGGTGGCTCACCCTGGTT
CGCACACTGGAGCGCGTCATCCGCTTGTGGCACGTCTTGAGGAAACTCTA
CAGCGACACGGGAAAAACGTTTCCACTCGAAGAGGGCGACAACAAGGACT
GCATCCTTCAGCTCTACTCGCTGCTGCAGCCTCCTTCCTCCGTCACGCGT
GATGGCCAGTACGGGGGTGCGCCGATGCTGGCGGACATCTACATGAAGTG
TGGCATGCTGAAGATGCGAGTGCTGGACCCGTCGGAGGAACTCAAGGTCT
TCGACATTCCGCCGCTTGGAGAAGACAGCCTCCCGGACCGCGAGGAACAG
AAGAAAGCTCTCCCGCACAAGGTGGTAGCACACGACGACTTGCGCCCCGT
GGCACAGAAGCGCGCAACGAACTCTGCCGCGCGCTCGTGACGAGGTTCTA
CAGTCGTGTGTGGGACACATCCACCCTGGACCCCTCGGTGTTATGCGATG
CTGCCTGCCTCCTGACACTGCCGTTCAGTGAGGGGAACTACCTTTCCGCG
ATGAAGCTTACAGCAGAGGAGGGCAAGTACTTGCCCGCAGGTCGTGCGTG
ACGGCCCCTACGCTGGACGAAAAGGTGCAAGAGAAGCTGGATGGAGCTTG
GGCCGAAATCAAGAAGCGAGCCGTCGCAGCCGTGAAGGCAGCGCAGAGTC
GGGCCGCGGGTGGTGGTGAGGGCGGGGGGGCAGGTCCTTTGGAGCGCGCC
CGCACTAGCGCCGCGGGTCCATCTCGTCGCAAGAATCGGAAGGACGCCTT
CGCAGTTTTCGGTCGCAACGAAGTCGCCCCCCAAAGCAGCGAAGGAGATG
TGGACTTGAGGAGGAGGTCTCGAGCGAGACCACGCGGTACAAGGGAGTCT
TCATTAAGTCAACGACTAGTCTATTGAACGTGTGCGTGTTACTGCTGTTT
GGCATTTTTATTATTGTTACTGTCCATGTGTTGTCGCAAGCTGCGAATTT
GAACAACACTAACAACACAAATCTTCCCGATCCTGCGGCCCTTCCGTGTC
CTTCACCCTTCCAGTTGCCGCCCAGCGAAGCCCTCAACTACTGGAAGACC
ATAGGGAAACATTCATTCCCCTCACTCAAGTATGTGGCGCAGCAATCATT
CGCCAGTCAAGCCTCTGCCGCTCAGGTCGAGAGAGACTTCAGCCACTGCG
GTCTTTTCTGTGTAGGGAACCGCATCCGAGTAGACGAGTACTGGCTGGAA
ATCGTGATGTTCCTCAAAGGAAACTACTCGTTTATTCCTGAGTACAAGGA
CATCCATCCCCAACATCGACGGGAAGGACATAGGGAAGTGCCTCCCTGCA
AAGTTCAGCGGAAAAATGACGATCTCCTCAAAGCAGAGATGGCGCTCGAC
CCGCTGTCAAACACCAACCCCCCCCAGGAGGATGTCATTGGCGTTGGCGA
GGATGGGTAGAT

Coding sequence (CDS) from alignment at Scaffold_548:38542..41203+

>EsuBft986_16a-0001 ID=EsuBft986_16a-0001|Name=EsuBft986_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1005bp|location=Sequence derived from alignment at Scaffold_548:38542..41203+ (Ectocarpus subulatus male Bft15b)
ATGTTCAAGGAGATGATGGCGACCGCTGCAGGAAACACGCCGTACCCAGA
GCTGCCTGCGGAGCGTGTGAAAGACCTCCTCGTCGAGATGTACATCGCCA
CGAAGAAGGCAGTCATGAGCAACATGTTGGAGGAAGTGAAAAATGCACCT
CTGCCCATTCTGCACCACATGATCGACATCTGGACTGACAAAGGATCGGG
GCGCAAGACGCTCTGGGAGAGGCCAAGGCCTGGGGTGCTTCTCGAGATCG
TCAAGGCTATCCTGCACGAGTTCGGCTTGCGCACATCGGACCTCGCGTCG
GGTACTGCGGACAGTGGATCGGACGTCAAGTCTGTGAGCTTCAACGGCCT
CCACCCGCAGTTTGGGGTTCTGTGGAATTGGTGTTTTTGCCACCTGATGG
TCAAGGCCGCTGAGGACGGCTTTGGCACCCACGTCGACCCTCAGAAGTCC
AAGAACCCAGAAGCGCGCGACATGCTCAAGAAGCTCATCAATCTGGTCGG
GACCCTCCACAGGTCTTCCAACTTCAAGGCTAAGTTCGACGACCTTCAGG
TGGACGTGTTGGGCGAGGTCTTGAAGATCCCCAACCAAGCTCCTAAACGG
TGGCTCACCCTGGTTCGCACACTGGAGCGCGTCATCCGCTTGTGGCACGT
CTTGAGGAAACTCTACAGCGACACGGGAAAAACGTTTCCACTCGAAGAGG
GCGACAACAAGGACTGCATCCTTCAGCTCTACTCGCTGCTGCAGCCTCCT
TCCTCCGTCACGCGTGATGGCCAGTACGGGGGTGCGCCGATGCTGGCGGA
CATCTACATGAAGTGTGGCATGCTGAAGATGCGAGTGCTGGACCCGTCGG
AGGAACTCAAGGTCTTCGACATTCCGCCGCTTGGAGAAGACAGCCTCCCG
GACCGCGAGGAACAGAAGAAAGCTCTCCCGCACAAGGTGGTAGCACACGA
CGACTTGCGCCCCGTGGCACAGAAGCGCGCAACGAACTCTGCCGCGCGCT
CGTGA