Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft986_17 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SignalP-noTM |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Length | 95 |
| Hectar predicted targeting category | signal peptide |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft986_17a-0001 ID=EsuBft986_17a-0001|Name=EsuBft986_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=957bp|location=Sequence derived from alignment at Scaffold_548:32057..34875+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAGCGCAGCTTTTCTAGGATTTTTCTTGCTGGAAACCACGCCTGCGGC
CCGACATTACTGCACGGGAGCGATCGTCAACGGGAAGGCGACATCTGGCT
GCCCGGTGCGTGCGCGGGGGTGCAAGCAAACCGATGGCACCTGGAAGGTG
ATGGACGTGGTCCTCGATCATGTGGCGCGCACCGGCCAGGCCGGCAACAA
AAAGCAGCGGATAAACCGCCGATGTGTGGAGGGGGAGGCAACGGGGCTTG
TGAGCGCCAACCACAGGATCACCTGTCCCTCGCTGGTGAAGACGCTGAAG
GCAACCTCCGGCGTGGATGTCAGCGAGAGGACAGCTAGCAGGATGCGGGC
GGACATCCTCGGCAAGGGAAAGGACGCGATCGCCAAGGAGTACCAACTCC
TCCAGAGCTACGGCGACCTTCTCGGGAGGGACAACCGCAACATCGTGGAG
TGCAAGGTGAGTCGCAACTTCAACAGCCTCTTCGTGCTGCTCGGCGCGGC
GGCGCGCCAAGCAACTGCCGGCGTTCAGCAGGCTTTCGCGATGGATGCCG
CGGCCTTCAAGGACGTGTGGAACGGCCAGTTCGGGACCCTTTCCTTCAAG
GATTCGAACAACAAGATCGTCCACGTCGCGACCATGATTCAAGCAAAGGA
GAATACAGCCATGTACATCAACCTCCTCACCAAGGCGATGGAGTTCCCCG
AGCTGCCGGACGTCTTGAACAACCCCAACGTGACGTGCTTCACCGACAAA
TACAAGTGTTCGGACGCCGCCGTTCCCAACGTCTGCCCAATTGCTGGGAT
GCCTGCACGACATGGTGCTACTGACCGCGAGGAGGCTGGACACCCCCGCC
AAGACCAAGGTCAACGATCACAACGCGATCGTGACTCCGTTTGCGACGGA
GACCCGGGAGCAGGAGTTCGTCCTGCGGCACTATCGGGCGTCTTGGGTTC
GGCATGA back to topprotein sequence of EsuBft986_17a-0001 >EsuBft986_17 ID=EsuBft986_17|Name=EsuBft986_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=318bp
MSAAFLGFFLLETTPAARHYCTGAIVNGKATSGCPVRARGCKQTDGTWKV
MDVVLDHVARTGQAGNKKQRINRRCVEGEATGLVSANHRITCPSLVKTLK
ATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYGDLLGRDNRNIVE
CKVSRNFNSLFVLLGAAARQATAGVQQAFAMDAAAFKDVWNGQFGTLSFK
DSNNKIVHVATMIQAKENTAMYINLLTKAMEFPELPDVLNNPNVTCFTDK
YKCSDAAVPNVCPIAGMPARHGATDREEAGHPRQDQGQRSQRDRDSVCDG
DPGAGVRPAALSGVLGSA back to topmRNA from alignment at Scaffold_548:32057..34875+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft986_17a-0001 ID=EsuBft986_17a-0001|Name=EsuBft986_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2819bp|location=Sequence derived from alignment at Scaffold_548:32057..34875+ (Ectocarpus subulatus male Bft15b)
ATGAGCGCAGCTTTTCTAGGATTTTTCTTGCTGGAAACCACGCCTGCGGC
CCGACATTACTGCACGGGAGCGATCGTCAACGGGAAGGCGACATCTGGCT
GCCCGGTGCGTGCGCGGGGGTGCAAGCAAACCGATGGCACCTGGAAGGTG
ATGGACGTGGTCCTCGATCATGTGGCGCGCACCGGCCAGGCCGGCAACAA
AAAGCAGCGGATAAACCGCCGATGTGTGGAGGGGGAGGCAACGGGGCTTG
TGAGCGCCAACCACAGGATCACCTGTCCCTCGCTGGTGAAGACGCTGAAG
GCAACCTCCGGCGTGGATGTCAGCGAGAGGACAGCTAGCAGGATGCGGGC
GGACATCCTCGGCAAGGGAAAGGACGCGATCGCCAAGGAGTACCAACTCC
TCCAGAGCTACGGCGACCTTCTCGGGAGGGACAACCGCAACATCGTGGAG
TGCAAGGTGAGTCGTTTATCGTGTCGTACGTTAGAGTTGGAACGTCCGTA
CCGTTTAGATGACATAGGACAAGGAGGTGCGCTCGTCAGAGTGGTGCCAT
ACTTCTGCAGTTCTTTTGCTTCCCTAGCATCCTACATAAGATGGAGCGCA
GTACGCTGCGCTGCGCTGCTGATCCGCTTCGTCCTTGACGATTTTTTTCC
CGCTCTTTTCGATGCAAATATTGCCGCCGCCCGTGGCATCTCGCCCGTTG
GTATACCGATGCATAGACGTAGCACGCGTAGCATACACTAGGAATCAGGC
GAGTCTTGTACTGTTTGAATGCAAGCATCCCTGCCCTGCACTCGCCGTTT
TGGGTCGTACTGCTGATAGCATCATAACCCTAGCCAAGCCAAATAAACAT
ATTTTGAGGAGGGGCGACGCCGATGTAGAGAAGAATGGGGAGAGGGGTAC
TGCTGTAAGACAGCCCACCACAAAACTTGATATCTTACCCTCTCTCTTGC
TCCCTACGCCCTTTCCTTCGTGCTGTTTTGAAACAATGGAACAGTGGGAC
AACAAAGGCAACTTCAACAGCCTCTTCGTGCTGCTCGGCGCGGCGGCGCG
CCAAGCAACTGCCGGCGTTCAGCAGGTGAAATGCGAGCTAGCACGCGCTT
CACTATGATTTAGAATGTCCCTGTCCGCGGGTAGTTCTCCGTTGCGTCTT
GGCGAACACCTGCTACGATAATAACAGTAGGATTAAAACTTCGTACAACA
CTCCTAACAGGAACGCAGCGAAAATAAACGAAATAGACACGTCAGGAGTT
GCCCCCCCTCCCTGCTTGAAGAATTGTCAAGAGGGGGGTACGCGGGGGTT
CCGTCCCATGCATGCATGCGGTGTGACTGCAGCTACTGTTGTATGACACA
CAAACGGGTGCCCCTGCAGTAGTAACTGCGAAGCAACTGTGAATGTGTGT
GGTTGTACGTGTGTTTGACGAAGATCATTTGAACAGTGTAGAAGCGCCGC
TGTCTACAGCAGTAGTAGTGTAGTAGTAGAAGGTAGTCTCTGCTCTGCTT
TCTTTGCATATGGGTAGCCATGGAACCCGTTTTACGAAGCATGTAGGTCA
GTGTTGTATGCTGGGTTACTGCAGTACGCGTTGCATGCTGGGTCNGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGTACTCACAGTCGTGCATGCCGTAGTCGTTGGT
CCATTTGACCTCGCATCCATGCAAGGTCGGGACGGATCACGCCGGGTTCT
GACCGGGCCAGGCTCTCACATCACCAAGCGCGAAGCGTCGTGAGGTAGTT
GGCGAGTCGCATGAAGGGGACGCTGCGTACTGCTGAGGGTGTTCGGCCTC
TAGTGCTTACTTCCTTTCGTAAGGATGACAGCTGCGAATGACTTCAATTG
TCTGCTGATGCTTTGACTTCCAGAGACAGTTGTAAGCACTACTGTGTAAC
TGCCTCGAGGGTGCTTGACCATTTTGACACAACGTGGTGCGATCATCCCC
CTTGCGCGGAGTGACGATTGTCCACCCCTCAAAACATGATCTACTCAACC
ATGGTGGTTCCGCAACAATATATCAAAGGAAAAACACAGCGGCAACCTGG
TTGTCGATCACACGAAGCGATCGGCTTGTTTTGCAGCGTCGTTGCCATGC
GACGAAAACAACCCCGATGGCAAACACCCGGGGAAGGACGGCACGTGCCG
GCATGGGGGAGGGGGGGGGAGGTTGCACGGCTTGCTTGGTTAAGTACAAG
CAAGAGAGCGAACATCCGCGGAGGTGCTTATTTCTTCTTATTTTGGTGAC
CCTCCCCGCCCACCGTTCCTCCCCCTCCCCCTCACGCTCTCCCCTCTCTC
TTGCTTCTCTTTCCTCCATCCCACCGTTTCTTCATTCGTCCAGGCTTTCG
CGATGGATGCCGCGGCCTTCAAGGACGTGTGGAACGGCCAGTTCGGGACC
CTTTCCTTCAAGGATTCGAACAACAAGATCGTCCACGTCGCGACCATGAT
TCAAGCAAAGGAGAATACAGCCATGTACATCAACCTCCTCACCAAGGCGA
TGGAGTTCCCCGAGCTGCCGGACGTCTTGAACAACCCCAACGTGACGTGC
TTCACCGACAAATACAAGTGTTCGGACGCCGCCGTTCCCAACGTCTGCCC
AATTGCTGGGATGCCTGCACGACATGGTGCTACTGACCGCGAGGAGGCTG
GACACCCCCGCCAAGACCAAGGTCAACGATCACAACGCGATCGTGACTCC
GTTTGCGACGGAGACCCGGGAGCAGGAGTTCGTCCTGCGGCACTATCGGG
CGTCTTGGGTTCGGCATGA back to topCoding sequence (CDS) from alignment at Scaffold_548:32057..34875+ >EsuBft986_17a-0001 ID=EsuBft986_17a-0001|Name=EsuBft986_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=957bp|location=Sequence derived from alignment at Scaffold_548:32057..34875+ (Ectocarpus subulatus male Bft15b)
ATGAGCGCAGCTTTTCTAGGATTTTTCTTGCTGGAAACCACGCCTGCGGC
CCGACATTACTGCACGGGAGCGATCGTCAACGGGAAGGCGACATCTGGCT
GCCCGGTGCGTGCGCGGGGGTGCAAGCAAACCGATGGCACCTGGAAGGTG
ATGGACGTGGTCCTCGATCATGTGGCGCGCACCGGCCAGGCCGGCAACAA
AAAGCAGCGGATAAACCGCCGATGTGTGGAGGGGGAGGCAACGGGGCTTG
TGAGCGCCAACCACAGGATCACCTGTCCCTCGCTGGTGAAGACGCTGAAG
GCAACCTCCGGCGTGGATGTCAGCGAGAGGACAGCTAGCAGGATGCGGGC
GGACATCCTCGGCAAGGGAAAGGACGCGATCGCCAAGGAGTACCAACTCC
TCCAGAGCTACGGCGACCTTCTCGGGAGGGACAACCGCAACATCGTGGAG
TGCAAGGTGAGTCGCAACTTCAACAGCCTCTTCGTGCTGCTCGGCGCGGC
GGCGCGCCAAGCAACTGCCGGCGTTCAGCAGGCTTTCGCGATGGATGCCG
CGGCCTTCAAGGACGTGTGGAACGGCCAGTTCGGGACCCTTTCCTTCAAG
GATTCGAACAACAAGATCGTCCACGTCGCGACCATGATTCAAGCAAAGGA
GAATACAGCCATGTACATCAACCTCCTCACCAAGGCGATGGAGTTCCCCG
AGCTGCCGGACGTCTTGAACAACCCCAACGTGACGTGCTTCACCGACAAA
TACAAGTGTTCGGACGCCGCCGTTCCCAACGTCTGCCCAATTGCTGGGAT
GCCTGCACGACATGGTGCTACTGACCGCGAGGAGGCTGGACACCCCCGCC
AAGACCAAGGTCAACGATCACAACGCGATCGTGACTCCGTTTGCGACGGA
GACCCGGGAGCAGGAGTTCGTCCTGCGGCACTATCGGGCGTCTTGGGTTC
GGCATGA back to top
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