EsuBft986_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft986_17a-0001
Unique NameEsuBft986_17a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_548contigScaffold_548:32057..34875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft986_17
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length95
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft986_17aEsuBft986_17aEctocarpus subulatus male Bft15bgeneScaffold_548 32057..34875 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_17a-0001-exonagat-exon-55093Ectocarpus subulatus male Bft15bexonScaffold_548 32057..32519 +
EsuBft986_17a-0001-exonEsuBft986_17a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_548 33064..33131 +
EsuBft986_17a-0001-exonagat-exon-55094Ectocarpus subulatus male Bft15bexonScaffold_548 34450..34875 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_17a-0001-cdsEsuBft986_17a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_548 32057..32519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_17a-0001EsuBft986_17Ectocarpus subulatus male Bft15bpolypeptideScaffold_548 32057..34875 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft986_17a-0001 ID=EsuBft986_17a-0001|Name=EsuBft986_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=957bp|location=Sequence derived from alignment at Scaffold_548:32057..34875+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCAGCTTTTCTAGGATTTTTCTTGCTGGAAACCACGCCTGCGGC
CCGACATTACTGCACGGGAGCGATCGTCAACGGGAAGGCGACATCTGGCT
GCCCGGTGCGTGCGCGGGGGTGCAAGCAAACCGATGGCACCTGGAAGGTG
ATGGACGTGGTCCTCGATCATGTGGCGCGCACCGGCCAGGCCGGCAACAA
AAAGCAGCGGATAAACCGCCGATGTGTGGAGGGGGAGGCAACGGGGCTTG
TGAGCGCCAACCACAGGATCACCTGTCCCTCGCTGGTGAAGACGCTGAAG
GCAACCTCCGGCGTGGATGTCAGCGAGAGGACAGCTAGCAGGATGCGGGC
GGACATCCTCGGCAAGGGAAAGGACGCGATCGCCAAGGAGTACCAACTCC
TCCAGAGCTACGGCGACCTTCTCGGGAGGGACAACCGCAACATCGTGGAG
TGCAAGGTGAGTCGCAACTTCAACAGCCTCTTCGTGCTGCTCGGCGCGGC
GGCGCGCCAAGCAACTGCCGGCGTTCAGCAGGCTTTCGCGATGGATGCCG
CGGCCTTCAAGGACGTGTGGAACGGCCAGTTCGGGACCCTTTCCTTCAAG
GATTCGAACAACAAGATCGTCCACGTCGCGACCATGATTCAAGCAAAGGA
GAATACAGCCATGTACATCAACCTCCTCACCAAGGCGATGGAGTTCCCCG
AGCTGCCGGACGTCTTGAACAACCCCAACGTGACGTGCTTCACCGACAAA
TACAAGTGTTCGGACGCCGCCGTTCCCAACGTCTGCCCAATTGCTGGGAT
GCCTGCACGACATGGTGCTACTGACCGCGAGGAGGCTGGACACCCCCGCC
AAGACCAAGGTCAACGATCACAACGCGATCGTGACTCCGTTTGCGACGGA
GACCCGGGAGCAGGAGTTCGTCCTGCGGCACTATCGGGCGTCTTGGGTTC
GGCATGA
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protein sequence of EsuBft986_17a-0001

>EsuBft986_17 ID=EsuBft986_17|Name=EsuBft986_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=318bp
MSAAFLGFFLLETTPAARHYCTGAIVNGKATSGCPVRARGCKQTDGTWKV
MDVVLDHVARTGQAGNKKQRINRRCVEGEATGLVSANHRITCPSLVKTLK
ATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYGDLLGRDNRNIVE
CKVSRNFNSLFVLLGAAARQATAGVQQAFAMDAAAFKDVWNGQFGTLSFK
DSNNKIVHVATMIQAKENTAMYINLLTKAMEFPELPDVLNNPNVTCFTDK
YKCSDAAVPNVCPIAGMPARHGATDREEAGHPRQDQGQRSQRDRDSVCDG
DPGAGVRPAALSGVLGSA
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mRNA from alignment at Scaffold_548:32057..34875+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft986_17a-0001 ID=EsuBft986_17a-0001|Name=EsuBft986_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2819bp|location=Sequence derived from alignment at Scaffold_548:32057..34875+ (Ectocarpus subulatus male Bft15b)
ATGAGCGCAGCTTTTCTAGGATTTTTCTTGCTGGAAACCACGCCTGCGGC
CCGACATTACTGCACGGGAGCGATCGTCAACGGGAAGGCGACATCTGGCT
GCCCGGTGCGTGCGCGGGGGTGCAAGCAAACCGATGGCACCTGGAAGGTG
ATGGACGTGGTCCTCGATCATGTGGCGCGCACCGGCCAGGCCGGCAACAA
AAAGCAGCGGATAAACCGCCGATGTGTGGAGGGGGAGGCAACGGGGCTTG
TGAGCGCCAACCACAGGATCACCTGTCCCTCGCTGGTGAAGACGCTGAAG
GCAACCTCCGGCGTGGATGTCAGCGAGAGGACAGCTAGCAGGATGCGGGC
GGACATCCTCGGCAAGGGAAAGGACGCGATCGCCAAGGAGTACCAACTCC
TCCAGAGCTACGGCGACCTTCTCGGGAGGGACAACCGCAACATCGTGGAG
TGCAAGGTGAGTCGTTTATCGTGTCGTACGTTAGAGTTGGAACGTCCGTA
CCGTTTAGATGACATAGGACAAGGAGGTGCGCTCGTCAGAGTGGTGCCAT
ACTTCTGCAGTTCTTTTGCTTCCCTAGCATCCTACATAAGATGGAGCGCA
GTACGCTGCGCTGCGCTGCTGATCCGCTTCGTCCTTGACGATTTTTTTCC
CGCTCTTTTCGATGCAAATATTGCCGCCGCCCGTGGCATCTCGCCCGTTG
GTATACCGATGCATAGACGTAGCACGCGTAGCATACACTAGGAATCAGGC
GAGTCTTGTACTGTTTGAATGCAAGCATCCCTGCCCTGCACTCGCCGTTT
TGGGTCGTACTGCTGATAGCATCATAACCCTAGCCAAGCCAAATAAACAT
ATTTTGAGGAGGGGCGACGCCGATGTAGAGAAGAATGGGGAGAGGGGTAC
TGCTGTAAGACAGCCCACCACAAAACTTGATATCTTACCCTCTCTCTTGC
TCCCTACGCCCTTTCCTTCGTGCTGTTTTGAAACAATGGAACAGTGGGAC
AACAAAGGCAACTTCAACAGCCTCTTCGTGCTGCTCGGCGCGGCGGCGCG
CCAAGCAACTGCCGGCGTTCAGCAGGTGAAATGCGAGCTAGCACGCGCTT
CACTATGATTTAGAATGTCCCTGTCCGCGGGTAGTTCTCCGTTGCGTCTT
GGCGAACACCTGCTACGATAATAACAGTAGGATTAAAACTTCGTACAACA
CTCCTAACAGGAACGCAGCGAAAATAAACGAAATAGACACGTCAGGAGTT
GCCCCCCCTCCCTGCTTGAAGAATTGTCAAGAGGGGGGTACGCGGGGGTT
CCGTCCCATGCATGCATGCGGTGTGACTGCAGCTACTGTTGTATGACACA
CAAACGGGTGCCCCTGCAGTAGTAACTGCGAAGCAACTGTGAATGTGTGT
GGTTGTACGTGTGTTTGACGAAGATCATTTGAACAGTGTAGAAGCGCCGC
TGTCTACAGCAGTAGTAGTGTAGTAGTAGAAGGTAGTCTCTGCTCTGCTT
TCTTTGCATATGGGTAGCCATGGAACCCGTTTTACGAAGCATGTAGGTCA
GTGTTGTATGCTGGGTTACTGCAGTACGCGTTGCATGCTGGGTCNGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGTACTCACAGTCGTGCATGCCGTAGTCGTTGGT
CCATTTGACCTCGCATCCATGCAAGGTCGGGACGGATCACGCCGGGTTCT
GACCGGGCCAGGCTCTCACATCACCAAGCGCGAAGCGTCGTGAGGTAGTT
GGCGAGTCGCATGAAGGGGACGCTGCGTACTGCTGAGGGTGTTCGGCCTC
TAGTGCTTACTTCCTTTCGTAAGGATGACAGCTGCGAATGACTTCAATTG
TCTGCTGATGCTTTGACTTCCAGAGACAGTTGTAAGCACTACTGTGTAAC
TGCCTCGAGGGTGCTTGACCATTTTGACACAACGTGGTGCGATCATCCCC
CTTGCGCGGAGTGACGATTGTCCACCCCTCAAAACATGATCTACTCAACC
ATGGTGGTTCCGCAACAATATATCAAAGGAAAAACACAGCGGCAACCTGG
TTGTCGATCACACGAAGCGATCGGCTTGTTTTGCAGCGTCGTTGCCATGC
GACGAAAACAACCCCGATGGCAAACACCCGGGGAAGGACGGCACGTGCCG
GCATGGGGGAGGGGGGGGGAGGTTGCACGGCTTGCTTGGTTAAGTACAAG
CAAGAGAGCGAACATCCGCGGAGGTGCTTATTTCTTCTTATTTTGGTGAC
CCTCCCCGCCCACCGTTCCTCCCCCTCCCCCTCACGCTCTCCCCTCTCTC
TTGCTTCTCTTTCCTCCATCCCACCGTTTCTTCATTCGTCCAGGCTTTCG
CGATGGATGCCGCGGCCTTCAAGGACGTGTGGAACGGCCAGTTCGGGACC
CTTTCCTTCAAGGATTCGAACAACAAGATCGTCCACGTCGCGACCATGAT
TCAAGCAAAGGAGAATACAGCCATGTACATCAACCTCCTCACCAAGGCGA
TGGAGTTCCCCGAGCTGCCGGACGTCTTGAACAACCCCAACGTGACGTGC
TTCACCGACAAATACAAGTGTTCGGACGCCGCCGTTCCCAACGTCTGCCC
AATTGCTGGGATGCCTGCACGACATGGTGCTACTGACCGCGAGGAGGCTG
GACACCCCCGCCAAGACCAAGGTCAACGATCACAACGCGATCGTGACTCC
GTTTGCGACGGAGACCCGGGAGCAGGAGTTCGTCCTGCGGCACTATCGGG
CGTCTTGGGTTCGGCATGA
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Coding sequence (CDS) from alignment at Scaffold_548:32057..34875+

>EsuBft986_17a-0001 ID=EsuBft986_17a-0001|Name=EsuBft986_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=957bp|location=Sequence derived from alignment at Scaffold_548:32057..34875+ (Ectocarpus subulatus male Bft15b)
ATGAGCGCAGCTTTTCTAGGATTTTTCTTGCTGGAAACCACGCCTGCGGC
CCGACATTACTGCACGGGAGCGATCGTCAACGGGAAGGCGACATCTGGCT
GCCCGGTGCGTGCGCGGGGGTGCAAGCAAACCGATGGCACCTGGAAGGTG
ATGGACGTGGTCCTCGATCATGTGGCGCGCACCGGCCAGGCCGGCAACAA
AAAGCAGCGGATAAACCGCCGATGTGTGGAGGGGGAGGCAACGGGGCTTG
TGAGCGCCAACCACAGGATCACCTGTCCCTCGCTGGTGAAGACGCTGAAG
GCAACCTCCGGCGTGGATGTCAGCGAGAGGACAGCTAGCAGGATGCGGGC
GGACATCCTCGGCAAGGGAAAGGACGCGATCGCCAAGGAGTACCAACTCC
TCCAGAGCTACGGCGACCTTCTCGGGAGGGACAACCGCAACATCGTGGAG
TGCAAGGTGAGTCGCAACTTCAACAGCCTCTTCGTGCTGCTCGGCGCGGC
GGCGCGCCAAGCAACTGCCGGCGTTCAGCAGGCTTTCGCGATGGATGCCG
CGGCCTTCAAGGACGTGTGGAACGGCCAGTTCGGGACCCTTTCCTTCAAG
GATTCGAACAACAAGATCGTCCACGTCGCGACCATGATTCAAGCAAAGGA
GAATACAGCCATGTACATCAACCTCCTCACCAAGGCGATGGAGTTCCCCG
AGCTGCCGGACGTCTTGAACAACCCCAACGTGACGTGCTTCACCGACAAA
TACAAGTGTTCGGACGCCGCCGTTCCCAACGTCTGCCCAATTGCTGGGAT
GCCTGCACGACATGGTGCTACTGACCGCGAGGAGGCTGGACACCCCCGCC
AAGACCAAGGTCAACGATCACAACGCGATCGTGACTCCGTTTGCGACGGA
GACCCGGGAGCAGGAGTTCGTCCTGCGGCACTATCGGGCGTCTTGGGTTC
GGCATGA
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