EsuBft2263_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2263_2a-0001
Unique NameEsuBft2263_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_548contigScaffold_548:860..2318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2263_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length108
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2263_2aEsuBft2263_2aEctocarpus subulatus male Bft15bgeneScaffold_548 860..2318 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2263_2a-0001-exonagat-exon-92263Ectocarpus subulatus male Bft15bexonScaffold_548 860..1047 +
EsuBft2263_2a-0001-exonagat-exon-92262Ectocarpus subulatus male Bft15bexonScaffold_548 1098..1431 +
EsuBft2263_2a-0001-exonEsuBft2263_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_548 1755..2318 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2263_2a-0001-exonagat-five_prime_utr-5822Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_548 860..1027 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2263_2a-0001-cdsEsuBft2263_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_548 1028..1047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2263_2a-0001EsuBft2263_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_548 1028..2318 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2263_2a-0001 ID=EsuBft2263_2a-0001|Name=EsuBft2263_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1086bp|location=Sequence derived from alignment at Scaffold_548:860..2318+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CATCCTGTTTCACCATCAACATCGACGACTCATGCCTTGTTCTCCACGGC
AATCGACTCCGCTTGGTCGAATTACATACAGAGGACACCACTCTCGAGGT
CCTCAGCCCTAAACTCCAACATCTACGGCCGTGCCGACTCGGGCCTGGCC
GTGGCTCGTTGCAGTCTCATGCTTGTAGACCGCAACTCGGTAGTAAGGCA
GCACCGGAAGAAGCACAACCGCGGGATACTGCTAACCTCCTGGCTGTTAA
AGAAGGGTACCACGAAGGCAGCTGGCAGTAAGTTGTCCTCTGTAGTTGCT
GATGAAGATCAGCTCCGCGAAAAGGGTAGAGAGCATGCTGAAGCCATCCA
AGAACGAGCATCAAAGCGCGGCAACCAACAGGCTGCCGCTGCTGCTGCTG
CTGCTGCTTCGGGGAAGGGGAAGCGCAAGGGGGCGGACGTAGCTCTCTCC
GACCCTCTAGCATTGGCTCACGATGGCGGGACGAGAAGCGGGGCTACCCC
AGAGGCTTCGCGCGAGGAACAGGCTTCGGAGGAGCGTCGCTCTAGCGCGC
TGGAGTTGATCCAGAAGGACCACGTGTTGATGGAGCGAGTACGGGCCATG
CTGGGGGCGAGCGCTGCAGACCAGGCAGCAGCTAAGGAGGCGGCGGTCAA
CGCGGCGAACACTCGCGCGCTCCGTGCCTCGCTCCAAGCGCTGAAGCGGC
ACAGCAACAGCTCGATAGGGTGGACCGCGTACACGACAGCGCTCGCCACA
GCAGCGGGAGCGGGGGAGCACACGTGTCCTGACCCCAACCTGTGCCCCCC
TGGCAACCGGTGCAAGCCCGCTGAGCCTGGTGGAGTGAGCTTTGCCGAGC
GAGCCAAGAGTCTCGGCATTCGGTACGAGACTTTCAGCGACGCACGTGTG
CGGATGCACAACACGAACCACGACATCGCCCCCAGGGACGCTGTGAGTGA
CGGGTGCTACGTGTATAACGAGCGCAAGACACGGAGTGACGTGACGAATC
CCGAGGTAATGGCTCTCGCCAAGGCTTTTTGGCACTCCGACGACGTTTCC
CGTGCAACAGGAAATTCAGGCAAGTTGCTGCGTNNN
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protein sequence of EsuBft2263_2a-0001

>EsuBft2263_2 ID=EsuBft2263_2|Name=EsuBft2263_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=306bp
MLVDRNSVVRQHRKKHNRGILLTSWLLKKGTTKAAGSKLSSVVADEDQLR
EKGREHAEAIQERASKRGNQQAAAAAAAAASGKGKRKGADVALSDPLALA
HDGGTRSGATPEASREEQASEERRSSALELIQKDHVLMERVRAMLGASAA
DQAAAKEAAVNAANTRALRASLQALKRHSNSSIGWTAYTTALATAAGAGE
HTCPDPNLCPPGNRCKPAEPGGVSFAERAKSLGIRYETFSDARVRMHNTN
HDIAPRDAVSDGCYVYNERKTRSDVTNPEVMALAKAFWHSDDVSRATGNS
GKLLRX
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mRNA from alignment at Scaffold_548:860..2318+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2263_2a-0001 ID=EsuBft2263_2a-0001|Name=EsuBft2263_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1459bp|location=Sequence derived from alignment at Scaffold_548:860..2318+ (Ectocarpus subulatus male Bft15b)
CATCCTGTTTCACCATCAACATCGACGACTCATGCCTTGTTCTCCACGGC
AATCGACTCCGCTTGGTCGAATTACATACAGAGGACACCACTCTCGAGGT
CCTCAGCCCTAAACTCCAACATCTACGGCCGTGCCGACTCGGGCCTGGCC
GTGGCTCGTTGCAGTCTCATGCTTGTAGACCGCAACTCGTTGCAGTCTCA
TGCTTGTAGACCGCAATCCACGTCCGCGGGGAAAAGAGGGTAGTAAGGCA
GCACCGGAAGAAGCACAACCGCGGGATACTGCTAACCTCCTGGCTGTTAA
AGAAGGGTACCACGAAGGCAGCTGGCAGTAAGTTGTCCTCTGTAGTTGCT
GATGAAGATCAGCTCCGCGAAAAGGGTAGAGAGCATGCTGAAGCCATCCA
AGAACGAGCATCAAAGCGCGGCAACCAACAGGCTGCCGCTGCTGCTGCTG
CTGCTGCTTCGGGGAAGGGGAAGCGCAAGGGGGCGGACGTAGCTCTCTCC
GACCCTCTAGCATTGGCTCACGATGGCGGGACGAGAAGCGGGGCTACCCC
AGAGGCTTCGCGCGAGGAACAGGTGAGGTTTTGGGTTGCTGAAGTGCTGT
TGAAATGCTTGGACTACAGTATTGTACTTCTTGGCGCCAATTCGTGCCGC
TCTAAATTTAAACAGTATTTGAATTTTGGTACGCACGGCCCTCTGTTGCT
CGTGCTCCCGAGATTGATCTCCATTCCACGACTTCGTGATGTTAGCGTAG
AAAGCGCATGAAAAGTTGCATGGGATCACTGTTGTACTAATTGCAGGCTT
CTACGTGTGGCATTTGTTGTTGGCCCACCCATACTCCTGCTGAACATAAC
ACACACCCTCCCCCGACTCCAACAACTCCTGATACATGTACGCAGGCTTC
GGAGGAGCGTCGCTCTAGCGCGCTGGAGTTGATCCAGAAGGACCACGTGT
TGATGGAGCGAGTACGGGCCATGCTGGGGGCGAGCGCTGCAGACCAGGCA
GCAGCTAAGGAGGCGGCGGTCAACGCGGCGAACACTCGCGCGCTCCGTGC
CTCGCTCCAAGCGCTGAAGCGGCACAGCAACAGCTCGATAGGGTGGACCG
CGTACACGACAGCGCTCGCCACAGCAGCGGGAGCGGGGGAGCACACGTGT
CCTGACCCCAACCTGTGCCCCCCTGGCAACCGGTGCAAGCCCGCTGAGCC
TGGTGGAGTGAGCTTTGCCGAGCGAGCCAAGAGTCTCGGCATTCGGTACG
AGACTTTCAGCGACGCACGTGTGCGGATGCACAACACGAACCACGACATC
GCCCCCAGGGACGCTGTGAGTGACGGGTGCTACGTGTATAACGAGCGCAA
GACACGGAGTGACGTGACGAATCCCGAGGTAATGGCTCTCGCCAAGGCTT
TTTGGCACTCCGACGACGTTTCCCGTGCAACAGGAAATTCAGGCAAGTTG
CTGCGTNNN
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Coding sequence (CDS) from alignment at Scaffold_548:860..2318+

>EsuBft2263_2a-0001 ID=EsuBft2263_2a-0001|Name=EsuBft2263_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=918bp|location=Sequence derived from alignment at Scaffold_548:860..2318+ (Ectocarpus subulatus male Bft15b)
ATGCTTGTAGACCGCAACTCGGTAGTAAGGCAGCACCGGAAGAAGCACAA
CCGCGGGATACTGCTAACCTCCTGGCTGTTAAAGAAGGGTACCACGAAGG
CAGCTGGCAGTAAGTTGTCCTCTGTAGTTGCTGATGAAGATCAGCTCCGC
GAAAAGGGTAGAGAGCATGCTGAAGCCATCCAAGAACGAGCATCAAAGCG
CGGCAACCAACAGGCTGCCGCTGCTGCTGCTGCTGCTGCTTCGGGGAAGG
GGAAGCGCAAGGGGGCGGACGTAGCTCTCTCCGACCCTCTAGCATTGGCT
CACGATGGCGGGACGAGAAGCGGGGCTACCCCAGAGGCTTCGCGCGAGGA
ACAGGCTTCGGAGGAGCGTCGCTCTAGCGCGCTGGAGTTGATCCAGAAGG
ACCACGTGTTGATGGAGCGAGTACGGGCCATGCTGGGGGCGAGCGCTGCA
GACCAGGCAGCAGCTAAGGAGGCGGCGGTCAACGCGGCGAACACTCGCGC
GCTCCGTGCCTCGCTCCAAGCGCTGAAGCGGCACAGCAACAGCTCGATAG
GGTGGACCGCGTACACGACAGCGCTCGCCACAGCAGCGGGAGCGGGGGAG
CACACGTGTCCTGACCCCAACCTGTGCCCCCCTGGCAACCGGTGCAAGCC
CGCTGAGCCTGGTGGAGTGAGCTTTGCCGAGCGAGCCAAGAGTCTCGGCA
TTCGGTACGAGACTTTCAGCGACGCACGTGTGCGGATGCACAACACGAAC
CACGACATCGCCCCCAGGGACGCTGTGAGTGACGGGTGCTACGTGTATAA
CGAGCGCAAGACACGGAGTGACGTGACGAATCCCGAGGTAATGGCTCTCG
CCAAGGCTTTTTGGCACTCCGACGACGTTTCCCGTGCAACAGGAAATTCA
GGCAAGTTGCTGCGTNNN
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