EsuBft3575_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3575_2a-0001
Unique Name	EsuBft3575_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_544	contig	Scaffold_544:358138..361439 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft3575_2
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	256
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3575_2a	EsuBft3575_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_544 358138..361439 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3575_2a-0001	EsuBft3575_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_544 358138..358528 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3575_2a-0001-exon	agat-exon-60704	Ectocarpus subulatus male Bft15b	exon	Scaffold_544 358138..358229 +
EsuBft3575_2a-0001-exon	agat-exon-60703	Ectocarpus subulatus male Bft15b	exon	Scaffold_544 358357..358763 +
EsuBft3575_2a-0001-exon	EsuBft3575_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_544 359374..361439 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3575_2a-0001-cds	EsuBft3575_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_544 358138..358229 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3575_2a-0001-exon	agat-three_prime_utr-13806	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_544 358529..358763 +
EsuBft3575_2a-0001-exon	agat-three_prime_utr-13807	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_544 359374..361439 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_544:358138..361439+
coding sequence from alignment at Scaffold_544:358138..361439+

spliced messenger RNA

>EsuBft3575_2a-0001 ID=EsuBft3575_2a-0001|Name=EsuBft3575_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2565bp|location=Sequence derived from alignment at Scaffold_544:358138..361439+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCCGTGGTCGGCCACAGGGGCCTTGCACTGAGTGCCAGTTGCTCGT
GTGCTTGTTCGCTGGGCTGCGATTCGTTTCTCCAAGCCACCGCACGCTCG
AAGAAGCCGTACACTCGCTGGCCGAAGCTACCGAGGACGGGGAAATTCAG
CGTCAGCAGGGAGAGAAGCACCGCGAGCTCTTGGACACAGAACGGAAGAG
GCTAAAGAACGTGGAGAAAGAGTGGAGGAAGACCATGGAGGACTTTCAGG
GAAAAGAAGCTTAGGTGAGCCGTTGCATGTATCCCATGCTCTTTCGGAGA
CGGGATTTCTTTGGAAGTCGCAATGTTGGTCAGGGGGAAAAGTTGGGGTT
TCTAACGGCAAGGGCCTCTAAGATCCAACTAGCCGATCAAAAACTGTTTT
GATGGGATGGTTTGCGAGAATTACCCAAAACTATGGCTAAAGAAATAAAA
GGACGTGTAGCCGGTAGGGCAACAAAAGGGTACGCCCGGCAAACGGGAAG
AAGCCCAGCAGTGGAGGCATGCTGCTGAATGCATGAGAACGACGGCGGCG
CCTGGGACAATTTTGTTCTTTCGCGACGTCTGTAACTTCAGGATCCCCAA
GGGTCTCAACGCAGCCCAGCTGGGCAGAACGTCGGGCCGAGGTGAGCGAG
GGTTTGGCACCACTCTCTCGTACTCTTCCGCCGTGTAGAGGTGTAGAGAC
GATATATAGGACGCACACGAGCGGGAGGCAGTCGCATACATTTGTAGCGC
GGGCTCCTCGTACATACCAGGACAGCCAGTCCATTTTTGAAATGATGGAA
GGTTTTTGTCGGAAGTTGCACTAAATACTGCTGCCGCCTCATGTAAAAAC
AAACCCCGCCGAAAGCGCCGCGAGACATCTTGAGGTTAGCCCGTGCATAT
ATCGTTAGGGTTACGTAGATGTGGTTACGAAGCCTCTCCTCTTCCCGTCG
CATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTTATTTTTAGC
ATCGACCGCGCTTGTGTTGTTGTTGTTGTTTGTTGTTTCTCACATTAGCT
CTAAAAAAAGAAAGATTGGGAGCCCGTGGTCTCAAAACCCGGCATACACG
ACCCCACGAAGAAACAGAAAAAAATAGGGTACAAAAACCACTCGGAAGAG
AAACAAAATGATAGAAAGAAAGACCAGCTACCGCACCAAACGAGAAAGAG
CGTCGAGGAGACCGATCAAAATAAAATAAAAGGAGAACGGGNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGGGGGTAACACTGGGG
CTTTTGATTTTTGCCCCATCTTCCTCCTGCGGTGCGTGCCTGGAACTTTT
TATCGCGAGAAGGGTACGGCCGTCCTTTCCCTCGTCAACGTGCTGCTACT
GTAGGTCGAAGTTTGGTACGCACGAGCTTATCCAGCTATGTTATCGCTTT
CACCGACAAAGTCTCAAATTAATCGCCTTCGATGGACTCCAGACTTTGCT
GCCAGTGGGTTCGAGATGAAACCTCTAGGCCATGTAAGACCTGCTAATTT
GTTTTTGTTCCGCTTCCTTCCCTCTCTCTCCGGTCCTCCATTGCGATGTG
CGCCCTTCGCGCTACATGCTCATCTCTAGATCTAGGTCGCTGTCAAACAC
ACGCGTTGGAACTATAAGTTGCTCCTGCCGAAATGAAGGCGCGGTACCCA
GCGCAAAATACAGGATAGGGTTTGTAGCGCTTTTTCCGAGAGTCCGCCCC
CTTGCTATTATTAGC

protein sequence of EsuBft3575_2a-0001

>EsuBft3575_2 ID=EsuBft3575_2|Name=EsuBft3575_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=87bp
MCRGRPQGPCTECQLLVCLFAGLRFVSPSHRTLEEAVHSLAEATEDGEIQ
RQQGEKHRELLDTERKRLKNVEKEWRKTMEDFQGKEA

mRNA from alignment at Scaffold_544:358138..361439+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3575_2a-0001 ID=EsuBft3575_2a-0001|Name=EsuBft3575_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3302bp|location=Sequence derived from alignment at Scaffold_544:358138..361439+ (Ectocarpus subulatus male Bft15b)
ATGTGCCGTGGTCGGCCACAGGGGCCTTGCACTGAGTGCCAGTTGCTCGT
GTGCTTGTTCGCTGGGCTGCGATTCGTTTCTCCAAGCCACCGGTAGGCTG
TTTTCCGGCCACTGTAGCTCGTGCAATAGGTTATCGCATTCGGCTCGTGA
ATCTCCGTCCTCGGCACTCACGAAACTCCCCGCCTCAGTTTTCTTATGAT
GGCTTCCTTGGATTGTCAGCACGCTCGAAGAAGCCGTACACTCGCTGGCC
GAAGCTACCGAGGACGGGGAAATTCAGCGTCAGCAGGGAGAGAAGCACCG
CGAGCTCTTGGACACAGAACGGAAGAGGCTAAAGAACGTGGAGAAAGAGT
GGAGGAAGACCATGGAGGACTTTCAGGGAAAAGAAGCTTAGGTGAGCCGT
TGCATGTATCCCATGCTCTTTCGGAGACGGGATTTCTTTGGAAGTCGCAA
TGTTGGTCAGGGGGAAAAGTTGGGGTTTCTAACGGCAAGGGCCTCTAAGA
TCCAACTAGCCGATCAAAAACTGTTTTGATGGGATGGTTTGCGAGAATTA
CCCAAAACTATGGCTAAAGAAATAAAAGGACGTGTAGCCGGTAGGGCAAC
AAAAGGGTACGCCCGGCAAACGGGAAGTAAGTATGAAAATGTTGGTGAGA
AGAGACGGCATCGCCCTGCTCGGCGTGACAAGCACAGCGGACATCCTTTC
GTGGCCGTCGCTCTTTGATTTGAATGGCCTCATGTCTTTCGTCGAGCGGA
GAACCGAAAGCTAAGGCCAATTGTTATGGTAAATTCCAATTTGGAAATTT
GCGAGCTTGGAAAAAGCGGATTCCAGCGGGGAATTCCAATTCGGAATTCC
GGCAGCATCCTAAGTTATGGGACAATTAGAAAATCTGCTACGCGGTGGGT
AGTTGCGTGGGGGGGTGGTGTCGAGTTTCGAGGCACGGAGCTGGCAAGTT
TGAAAAAGGGCGCGCTACCATCGTATCTTGTGGTCCATAATTGTGCCGAG
GGCGTACCGAAAGCATGGCAGCACCACCTGCGGCGAATGCGCCCCCTGAT
CTGAGCACCTGCGAGCCTCTCGACTGGGCGACAGATAATTCCAAGGATCT
CGAGTGGGCGTGGGATCGGTTTCTCTCGCGCCCTTCCCACAGCGGTGAGC
CGTGGACACACCAGCAGCGGGTCTTGCTCCAGAATCCGGCCCTCTACTAC
TCCAACCAATCTGTGAGGGAGAAGGGCGAGATGCAGGAAGCCCAGCAGTG
GAGGCATGCTGCTGAATGCATGAGAACGACGGCGGCGCCTGGGACAATTT
TGTTCTTTCGCGACGTCTGTAACTTCAGGATCCCCAAGGGTCTCAACGCA
GCCCAGCTGGGCAGAACGTCGGGCCGAGGTGAGCGAGGGTTTGGCACCAC
TCTCTCGTACTCTTCCGCCGTGTAGAGGTGTAGAGACGATATATAGGACG
CACACGAGCGGGAGGCAGTCGCATACATTTGTAGCGCGGGCTCCTCGTAC
ATACCAGGACAGCCAGTCCATTTTTGAAATGATGGAAGGTTTTTGTCGGA
AGTTGCACTAAATACTGCTGCCGCCTCATGTAAAAACAAACCCCGCCGAA
AGCGCCGCGAGACATCTTGAGGTTAGCCCGTGCATATATCGTTAGGGTTA
CGTAGATGTGGTTACGAAGCCTCTCCTCTTCCCGTCGCATGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTTTTTATTTTTAGCATCGACCGCGCTT
GTGTTGTTGTTGTTGTTTGTTGTTTCTCACATTAGCTCTAAAAAAAGAAA
GATTGGGAGCCCGTGGTCTCAAAACCCGGCATACACGACCCCACGAAGAA
ACAGAAAAAAATAGGGTACAAAAACCACTCGGAAGAGAAACAAAATGATA
GAAAGAAAGACCAGCTACCGCACCAAACGAGAAAGAGCGTCGAGGAGACC
GATCAAAATAAAATAAAAGGAGAACGGGNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGGAGGGGGTAACACTGGGGCTTTTGATTTTTG
CCCCATCTTCCTCCTGCGGTGCGTGCCTGGAACTTTTTATCGCGAGAAGG
GTACGGCCGTCCTTTCCCTCGTCAACGTGCTGCTACTGTAGGTCGAAGTT
TGGTACGCACGAGCTTATCCAGCTATGTTATCGCTTTCACCGACAAAGTC
TCAAATTAATCGCCTTCGATGGACTCCAGACTTTGCTGCCAGTGGGTTCG
AGATGAAACCTCTAGGCCATGTAAGACCTGCTAATTTGTTTTTGTTCCGC
TTCCTTCCCTCTCTCTCCGGTCCTCCATTGCGATGTGCGCCCTTCGCGCT
ACATGCTCATCTCTAGATCTAGGTCGCTGTCAAACACACGCGTTGGAACT
ATAAGTTGCTCCTGCCGAAATGAAGGCGCGGTACCCAGCGCAAAATACAG
GATAGGGTTTGTAGCGCTTTTTCCGAGAGTCCGCCCCCTTGCTATTATTA
GC

Coding sequence (CDS) from alignment at Scaffold_544:358138..361439+

>EsuBft3575_2a-0001 ID=EsuBft3575_2a-0001|Name=EsuBft3575_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=264bp|location=Sequence derived from alignment at Scaffold_544:358138..361439+ (Ectocarpus subulatus male Bft15b)
ATGTGCCGTGGTCGGCCACAGGGGCCTTGCACTGAGTGCCAGTTGCTCGT
GTGCTTGTTCGCTGGGCTGCGATTCGTTTCTCCAAGCCACCGCACGCTCG
AAGAAGCCGTACACTCGCTGGCCGAAGCTACCGAGGACGGGGAAATTCAG
CGTCAGCAGGGAGAGAAGCACCGCGAGCTCTTGGACACAGAACGGAAGAG
GCTAAAGAACGTGGAGAAAGAGTGGAGGAAGACCATGGAGGACTTTCAGG
GAAAAGAAGCTTAG