Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 6500.XP_005092035.1 |
| ProteomeId | EsuBft1015_9 |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 33208|Metazoa |
| Length | 81 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.01e-07 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Ribonuclease H protein |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1015_9a-0001 ID=EsuBft1015_9a-0001|Name=EsuBft1015_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=815bp|location=Sequence derived from alignment at Scaffold_544:268741..269626- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTTCGAGGTGGACCAAGGCCTCCGACAGGGATGCAACCTGGCCCCGC
TGCTGTTCAACTTGTTCTTTGCCGCGATGCTCATGGTCGCCGTGGCCGAG
TTCGACAAGGACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACA
AGTGGAGTACACGGGCAAGAAGGGCAGGTCGGCGGGGAAGAAGACGACGG
TGGTGACGACGCGGAGGCCGTGTGGGCCATGCTCTACGCTGACGACGCGG
CCATCGTCTCGCGCTCGCCGGAGAGTTTCGAGAAGATGATGTCGGCCATC
GTGCGCGTGGCCGGCCTGTTCGGACTGATGGTATCGGAGCCAAAGATGGA
GATCATGTGTATGCTGCCGAACGGGATCGGGGAACGTCCGTTCACGGTCA
GCGCCGCCGGCCATACCTACATGCAGACAGATCGGTTTGTGTACCTCGGA
CGCACCATCTCCGCGGACGGGAAGGCTGACCGGGAGATCACGAGCCGCAG
CTGCCGAGCGTGGAAGTGCTACCGCCAGAACAGTGCTTCGACGTACGACG
AGGCGACGGGCCGACCGCCAGCTCAAAATCCGGCTACTCCAGGCTGAAGT
GGTGGAGATTTTCCTATACGGGTGCGCCTCGTAGAGCCTAACAGCGGAGC
ACTACACGAAGCTCAATGGGACCCACCGCCAGTTCCTTACACGGTGCATC
GGCTGGAGCAAGCGCAAACGCTCAGACCGCCCCCTGTCCTATGCACAGGC
CCCCATCCAGGCCGGCTGCGAGGAAACCATCGAGGCCACCGTGCAAAAAC
GGAGACTTCTGTGTT back to topprotein sequence of EsuBft1015_9a-0001 >EsuBft1015_9 ID=EsuBft1015_9|Name=EsuBft1015_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=198bp
MVRGGPRPPTGMQPGPAAVQLVLCRDAHGRRGRVRQGPQGDGGHGQDRDT
SGVHGQEGQVGGEEDDGGDDAEAVWAMLYADDAAIVSRSPESFEKMMSAI
VRVAGLFGLMVSEPKMEIMCMLPNGIGERPFTVSAAGHTYMQTDRFVYLG
RTISADGKADREITSRSCRAWKCYRQNSASTYDEATGRPPAQNPATPG back to topmRNA from alignment at Scaffold_544:268741..269626- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1015_9a-0001 ID=EsuBft1015_9a-0001|Name=EsuBft1015_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=886bp|location=Sequence derived from alignment at Scaffold_544:268741..269626- (Ectocarpus subulatus male Bft15b)
ATGGTTCGAGGTGGACCAAGGCCTCCGACAGGGATGCAACCTGGCCCCGC
TGCTGTTCAACTTGTTCTTTGCCGCGATGCTCATGGTCGCCGTGGCCGAG
TTCGACAAGGACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACA
AGTGGAGTACACGGGCAAGAAGGGCAGGTCGGCGGGGANGTGACGGCGGA
CATGGTCAAGATCGAGACACAAGTCGAGTACACGGGCAGCAAGGGTAGGT
CGGCGGGGAAGAAGACGACGGTGGTGACGACGCGGAGGCCGTGTGGGCCA
TGCTCTACGCTGACGACGCGGCCATCGTCTCGCGCTCGCCGGAGAGTTTC
GAGAAGATGATGTCGGCCATCGTGCGCGTGGCCGGCCTGTTCGGACTGAT
GGTATCGGAGCCAAAGATGGAGATCATGTGTATGCTGCCGAACGGGATCG
GGGAACGTCCGTTCACGGTCAGCGCCGCCGGCCATACCTACATGCAGACA
GATCGGTTTGTGTACCTCGGACGCACCATCTCCGCGGACGGGAAGGCTGA
CCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCTACCGCCAGA
ACAGTGCTTCGACGTACGACGAGGCGACGGGCCGACCGCCAGCTCAAAAT
CCGGCTACTCCAGGCTGAAGTGGTGGAGATTTTCCTATACGGGTGCGCCT
CGTAGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCCACCGC
CAGTTCCTTACACGGTGCATCGGCTGGAGCAAGCGCAAACGCTCAGACCG
CCCCCTGTCCTATGCACAGGCCCCCATCCAGGCCGGCTGCGAGGAAACCA
TCGAGGCCACCGTGCAAAAACGGAGACTTCTGTGTT back to topCoding sequence (CDS) from alignment at Scaffold_544:268741..269626- >EsuBft1015_9a-0001 ID=EsuBft1015_9a-0001|Name=EsuBft1015_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=597bp|location=Sequence derived from alignment at Scaffold_544:268741..269626- (Ectocarpus subulatus male Bft15b)
ATGGTTCGAGGTGGACCAAGGCCTCCGACAGGGATGCAACCTGGCCCCGC
TGCTGTTCAACTTGTTCTTTGCCGCGATGCTCATGGTCGCCGTGGCCGAG
TTCGACAAGGACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACA
AGTGGAGTACACGGGCAAGAAGGGCAGGTCGGCGGGGAAGAAGACGACGG
TGGTGACGACGCGGAGGCCGTGTGGGCCATGCTCTACGCTGACGACGCGG
CCATCGTCTCGCGCTCGCCGGAGAGTTTCGAGAAGATGATGTCGGCCATC
GTGCGCGTGGCCGGCCTGTTCGGACTGATGGTATCGGAGCCAAAGATGGA
GATCATGTGTATGCTGCCGAACGGGATCGGGGAACGTCCGTTCACGGTCA
GCGCCGCCGGCCATACCTACATGCAGACAGATCGGTTTGTGTACCTCGGA
CGCACCATCTCCGCGGACGGGAAGGCTGACCGGGAGATCACGAGCCGCAG
CTGCCGAGCGTGGAAGTGCTACCGCCAGAACAGTGCTTCGACGTACGACG
AGGCGACGGGCCGACCGCCAGCTCAAAATCCGGCTACTCCAGGCTGA back to top
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